Wall clock time and date at job start Thu Apr 9 2020 13:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47171 * 2 1 4 4 C 1.50703 * 109.47145 * 239.99313 * 2 1 3 5 5 H 1.08005 * 120.00245 * 245.45748 * 4 2 1 6 6 C 1.37875 * 119.99777 * 65.46517 * 4 2 1 7 7 N 1.31521 * 120.00003 * 9.54820 * 6 4 2 8 8 Si 1.86801 * 120.00077 * 189.54814 * 6 4 2 9 9 H 1.48497 * 109.47132 * 84.99274 * 8 6 4 10 10 H 1.48499 * 109.47276 * 204.99276 * 8 6 4 11 11 H 1.48504 * 109.46897 * 324.99332 * 8 6 4 12 12 O 1.45207 * 109.47164 * 119.99573 * 2 1 3 13 13 C 1.34898 * 117.00122 * 270.00185 * 12 2 1 14 14 O 1.21629 * 119.99642 * 359.97438 * 13 12 2 15 15 C 1.46395 * 119.99863 * 179.97438 * 13 12 2 16 16 S 1.75831 * 125.46447 * 359.97438 * 15 13 12 17 17 C 1.70612 * 91.56287 * 180.02562 * 16 15 13 18 18 C 1.33858 * 110.96183 * 359.75081 * 17 16 15 19 19 C 1.36751 * 125.45985 * 180.02562 * 15 13 12 20 20 C 1.50707 * 123.35551 * 359.95544 * 19 15 13 21 21 F 1.39897 * 109.46973 * 300.00145 * 20 19 15 22 22 F 1.39899 * 109.46690 * 60.00482 * 20 19 15 23 23 H 1.08994 * 109.47233 * 303.66736 * 1 2 3 24 24 H 1.09001 * 109.47249 * 63.67384 * 1 2 3 25 25 H 1.09006 * 109.46979 * 183.66924 * 1 2 3 26 26 H 0.97000 * 119.99732 * 179.97438 * 7 6 4 27 27 H 1.08002 * 124.52090 * 180.02562 * 17 16 15 28 28 H 1.07998 * 122.44434 * 180.25745 * 18 17 16 29 29 H 1.09002 * 109.46941 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.5786 -1.6372 -1.1337 6 6 1.7946 -0.1776 -2.4796 7 7 1.2992 1.0354 -2.5936 8 14 2.1763 -1.1783 -4.0101 9 1 1.0244 -2.0613 -4.3240 10 1 2.4230 -0.2617 -5.1521 11 1 3.3848 -2.0074 -3.7707 12 8 2.0140 -0.6844 1.1857 13 6 2.2181 0.0678 2.2866 14 8 1.9977 1.2636 2.2555 15 6 2.7049 -0.5550 3.5188 16 16 3.0682 -2.2631 3.7239 17 6 3.5224 -2.0192 5.3502 18 6 3.4057 -0.7302 5.6918 19 6 2.9490 0.0982 4.6951 20 6 2.7440 1.5800 4.8781 21 9 3.5579 2.2778 3.9794 22 9 1.4032 1.8984 4.6373 23 1 -0.3633 0.5697 0.8552 24 1 -0.3634 0.4557 -0.9211 25 1 -0.3633 -1.0256 0.0658 26 1 1.1323 1.4105 -3.4724 27 1 3.8631 -2.7998 6.0143 28 1 3.6492 -0.3682 6.6798 29 1 3.0058 1.8597 5.8986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873504916.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:44:14 Heat of formation + Delta-G solvation = -176.039545 kcal Electronic energy + Delta-G solvation = -19292.643078 eV Core-core repulsion = 15749.674152 eV Total energy + Delta-G solvation = -3542.968926 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.82245 -47.86389 -41.26042 -39.10525 -37.44815 -35.31964 -32.15146 -31.23362 -28.93040 -27.45274 -24.91905 -23.88815 -22.21290 -20.30241 -19.93911 -18.68684 -18.18083 -18.10774 -17.90868 -17.02023 -16.85196 -16.69782 -15.93228 -15.34455 -14.84624 -14.76549 -14.41200 -14.22722 -14.13368 -13.86963 -13.58680 -13.38930 -13.29866 -12.99733 -12.78768 -12.54675 -12.38570 -12.18196 -11.80775 -11.66171 -11.50553 -11.06221 -10.63422 -10.10206 -9.72991 -8.33351 -6.48038 -0.82438 0.28442 0.88325 1.15125 1.40112 1.43780 1.53682 1.77418 1.85372 2.38852 2.88592 2.98517 3.31049 3.62151 3.95417 4.08177 4.16238 4.33960 4.46973 4.71062 4.71966 4.78666 4.97096 5.08885 5.13998 5.40923 5.50756 5.77170 5.99225 6.55275 6.82126 7.22076 8.76978 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.005597 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.157200 B = 5001.925337 C = 5706.412367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.218 3.782 3 H 0.010 0.990 4 C -0.550 4.550 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.263 1.263 12 O -0.358 6.358 13 C 0.507 3.493 14 O -0.523 6.523 15 C -0.271 4.271 16 S 0.300 5.700 17 C -0.212 4.212 18 C -0.129 4.129 19 C -0.115 4.115 20 C 0.319 3.681 21 F -0.215 7.215 22 F -0.214 7.214 23 H 0.023 0.977 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.272 0.728 27 H 0.224 0.776 28 H 0.199 0.801 29 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -7.670 19.291 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.027 0.973 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.806 3.194 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.187 1.187 12 O -0.275 6.275 13 C 0.351 3.649 14 O -0.415 6.415 15 C -0.390 4.390 16 S 0.570 5.430 17 C -0.350 4.350 18 C -0.156 4.156 19 C -0.134 4.134 20 C 0.264 3.736 21 F -0.196 7.196 22 F -0.195 7.195 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.240 0.760 28 H 0.216 0.784 29 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.924 -8.490 18.122 20.610 hybrid contribution -0.140 1.634 -0.406 1.690 sum 4.785 -6.856 17.716 19.590 Atomic orbital electron populations 1.21901 0.96673 1.00363 1.00338 1.20414 0.91929 0.92456 0.78705 0.97260 1.21224 1.38405 1.09323 0.89786 0.91186 1.25900 0.94334 0.95710 1.02328 1.70127 1.44406 1.15372 1.25653 0.85184 0.79287 0.78141 0.76738 1.18846 1.20421 1.18727 1.86541 1.76777 1.43000 1.21149 1.20384 0.74951 0.85208 0.84318 1.90867 1.49230 1.16693 1.84717 1.23813 1.17066 1.02358 0.95752 1.83454 1.54783 0.99564 1.05205 1.26070 1.05443 1.02246 1.01247 1.19938 1.02895 0.91694 1.01122 1.20514 1.02407 0.97191 0.93242 1.20789 0.72508 0.85855 0.94447 1.92993 1.73054 1.80675 1.72901 1.92986 1.36736 1.93598 1.96173 0.95763 0.91462 0.92544 0.91943 0.75978 0.78415 0.80204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.19 9.43 71.98 0.68 -6.51 15 2 C 0.22 12.63 2.43 29.85 0.07 12.70 15 3 H 0.01 0.63 7.10 -2.39 -0.02 0.61 15 4 C -0.55 -32.17 8.82 25.60 0.23 -31.94 15 5 H 0.07 3.97 7.83 -2.91 -0.02 3.95 15 6 C 0.02 0.99 5.17 84.65 0.44 1.42 15 7 N -0.92 -54.88 12.16 21.45 0.26 -54.62 15 8 Si 0.98 43.59 29.55 68.60 2.03 45.61 15 9 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 11 H -0.26 -11.20 7.11 99.48 0.71 -10.50 15 12 O -0.36 -18.48 9.72 -58.13 -0.57 -19.05 15 13 C 0.51 24.21 7.86 69.94 0.55 24.76 15 14 O -0.52 -28.19 12.28 19.41 0.24 -27.95 15 15 C -0.27 -9.48 6.43 24.05 0.15 -9.33 15 16 S 0.30 7.15 22.92 -56.49 -1.29 5.85 15 17 C -0.21 -2.95 10.92 66.82 0.73 -2.22 15 18 C -0.13 -2.03 9.92 21.08 0.21 -1.82 15 19 C -0.11 -3.14 5.36 -20.41 -0.11 -3.25 15 20 C 0.32 9.05 4.98 71.24 0.35 9.40 15 21 F -0.21 -8.01 15.78 44.97 0.71 -7.30 15 22 F -0.21 -7.79 15.78 44.97 0.71 -7.08 15 23 H 0.02 1.22 8.14 -2.39 -0.02 1.20 15 24 H 0.07 3.77 6.83 -2.39 -0.02 3.75 15 25 H 0.06 2.74 8.14 -2.38 -0.02 2.72 15 26 H 0.27 15.11 8.31 -92.71 -0.77 14.33 15 27 H 0.22 1.00 8.06 -2.91 -0.02 0.97 15 28 H 0.20 1.22 8.06 -2.91 -0.02 1.20 15 29 H 0.18 2.59 8.05 -2.39 -0.02 2.57 15 Total: -1.00 -78.78 281.36 6.58 -72.20 By element: Atomic # 1 Polarization: -2.07 SS G_CDS: 1.19 Total: -0.88 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 3.30 Total: -6.79 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.26 Total: -54.62 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.33 Total: -47.00 kcal Atomic # 9 Polarization: -15.80 SS G_CDS: 1.42 Total: -14.38 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 7.15 SS G_CDS: -1.29 Total: 5.85 kcal Total: -78.78 6.58 -72.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873504916.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.839 kcal (2) G-P(sol) polarization free energy of solvation -78.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds