Wall clock time and date at job start Thu Apr 9 2020 13:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99748 * 2 1 4 4 H 1.48504 * 109.47444 * 269.99796 * 3 2 1 5 5 H 1.48500 * 109.47234 * 30.00073 * 3 2 1 6 6 H 1.48502 * 109.46781 * 150.00358 * 3 2 1 7 7 C 1.37874 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00580 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47260 * 180.02562 * 9 7 2 11 11 O 1.45195 * 109.46924 * 180.02562 * 10 9 7 12 12 C 1.34803 * 117.00138 * 179.97438 * 11 10 9 13 13 O 1.21558 * 119.99753 * 0.02562 * 12 11 10 14 14 C 1.47032 * 120.00301 * 179.97438 * 12 11 10 15 15 C 1.36107 * 123.47043 * 5.71329 * 14 12 11 16 16 S 1.70447 * 110.80195 * 180.02562 * 15 14 12 17 17 C 1.75499 * 92.45650 * 0.02562 * 16 15 14 18 18 C 1.32736 * 110.59918 * 359.97438 * 17 16 15 19 19 C 1.50708 * 123.45459 * 180.02562 * 18 17 16 20 20 F 1.39898 * 109.46977 * 116.06011 * 19 18 17 21 21 F 1.39898 * 109.46927 * 236.06138 * 19 18 17 22 22 H 0.97000 * 119.99687 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46712 * 60.00037 * 9 7 2 24 24 H 1.08997 * 109.46535 * 300.00131 * 9 7 2 25 25 H 1.08996 * 109.47552 * 59.99962 * 10 9 7 26 26 H 1.09001 * 109.47181 * 299.99968 * 10 9 7 27 27 H 1.07992 * 124.60122 * 0.02562 * 15 14 12 28 28 H 1.08003 * 124.69852 * 180.26498 * 17 16 15 29 29 H 1.08993 * 109.46965 * 356.05807 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9195 -0.0011 12 6 2.2535 -6.0501 -0.0018 13 8 3.4674 -5.9864 -0.0013 14 6 1.5860 -7.3601 -0.0018 15 6 0.2386 -7.5161 -0.1143 16 16 -0.1850 -9.1667 -0.0767 17 6 1.4876 -9.6696 0.0955 18 6 2.2925 -8.6144 0.1185 19 6 3.7900 -8.7147 0.2560 20 9 4.3986 -8.2222 -0.9034 21 9 4.2085 -7.9617 1.3583 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8720 -3.6044 0.8894 26 1 2.8720 -3.6043 -0.8905 27 1 -0.4665 -6.7042 -0.2139 28 1 1.8167 -10.6957 0.1676 29 1 4.0726 -9.7574 0.3999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885596848.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:44:18 Heat of formation + Delta-G solvation = -162.607106 kcal Electronic energy + Delta-G solvation = -18690.127223 eV Core-core repulsion = 15147.740771 eV Total energy + Delta-G solvation = -3542.386452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.76148 -46.77239 -39.95233 -37.67557 -35.85590 -33.34253 -31.26048 -30.07640 -27.05374 -25.34423 -24.26731 -21.94091 -20.75421 -19.26801 -18.23480 -17.63304 -17.05042 -16.98558 -16.28443 -15.92529 -15.87305 -15.30378 -14.49129 -13.85992 -13.55854 -13.42053 -13.31258 -13.11550 -12.91686 -12.79581 -12.45772 -12.34813 -11.71331 -11.21125 -11.04470 -11.01049 -10.73594 -10.67653 -10.20846 -9.62259 -9.61847 -9.46682 -9.29450 -8.82531 -8.43599 -6.10015 -4.14007 0.44713 1.09328 1.41719 1.46687 3.12277 3.23109 3.29587 3.35570 3.40734 3.75042 4.14699 4.31939 4.40609 4.72726 5.03500 5.06098 5.25108 5.26779 5.33235 5.65009 5.79686 6.12772 6.13763 6.65466 6.97039 7.56300 7.62627 7.87497 8.19661 8.27553 8.91463 9.50355 11.01614 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.004061 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.377523 B = 6893.153238 C = 7739.431614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.353 6.353 12 C 0.511 3.489 13 O -0.492 6.492 14 C -0.120 4.120 15 C -0.181 4.181 16 S 0.221 5.779 17 C -0.206 4.206 18 C -0.139 4.139 19 C 0.342 3.658 20 F -0.189 7.189 21 F -0.188 7.188 22 H 0.263 0.737 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.189 0.811 28 H 0.179 0.821 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 -23.188 0.221 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.005 3.995 11 O -0.270 6.270 12 C 0.352 3.648 13 O -0.381 6.381 14 C -0.134 4.134 15 C -0.318 4.318 16 S 0.488 5.512 17 C -0.341 4.341 18 C -0.152 4.152 19 C 0.286 3.714 20 F -0.170 7.170 21 F -0.169 7.169 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.206 0.794 28 H 0.197 0.803 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.235 -23.738 0.136 23.770 hybrid contribution 1.870 1.968 0.055 2.716 sum 0.636 -21.770 0.190 21.780 Atomic orbital electron populations 1.69975 1.06100 1.26972 1.49914 1.24981 0.94924 0.99397 0.94862 0.86462 0.79791 0.82765 0.78251 1.20473 1.21049 1.19683 1.20987 0.93236 0.90074 1.52051 0.92197 1.19170 0.94191 0.89018 0.98805 1.23673 0.96398 0.78283 1.01162 1.86560 1.41912 1.15490 1.83045 1.20239 0.85657 0.84734 0.74136 1.90888 1.14378 1.88033 1.44812 1.19312 0.92321 0.91589 1.10178 1.25997 0.99354 1.03480 1.03003 1.83105 1.04699 0.96086 1.67289 1.25334 0.97387 1.02700 1.08719 1.20425 0.96502 0.91977 1.06260 1.19803 0.85556 0.92995 0.73039 1.93045 1.84063 1.90193 1.49671 1.93050 1.90836 1.79573 1.53467 0.92731 0.95386 0.95367 0.92133 0.92174 0.79390 0.80324 0.86756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 15 8 H 0.06 1.66 7.74 -52.48 -0.41 1.26 15 9 C 0.03 0.67 5.35 -27.88 -0.15 0.52 15 10 C 0.08 1.79 5.42 37.16 0.20 1.99 15 11 O -0.35 -7.43 9.89 -40.77 -0.40 -7.83 15 12 C 0.51 9.94 7.85 34.30 0.27 10.20 15 13 O -0.49 -10.65 12.84 -19.31 -0.25 -10.90 15 14 C -0.12 -1.80 5.97 -104.65 -0.62 -2.42 15 15 C -0.18 -2.14 10.56 29.97 0.32 -1.82 15 16 S 0.22 1.72 23.02 -107.50 -2.47 -0.76 15 17 C -0.21 -1.67 10.85 28.85 0.31 -1.35 15 18 C -0.14 -1.69 5.45 -104.05 -0.57 -2.26 15 19 C 0.34 4.25 4.97 36.01 0.18 4.43 15 20 F -0.19 -2.93 15.99 2.25 0.04 -2.89 15 21 F -0.19 -2.98 15.61 2.25 0.04 -2.94 15 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.06 1.40 8.14 -51.93 -0.42 0.98 15 26 H 0.06 1.39 8.14 -51.93 -0.42 0.96 15 27 H 0.19 2.12 8.02 -52.49 -0.42 1.70 15 28 H 0.18 0.74 8.06 -52.48 -0.42 0.32 15 29 H 0.12 0.80 8.04 -51.93 -0.42 0.38 15 LS Contribution 285.21 15.07 4.30 4.30 Total: -1.00 -33.89 285.21 -6.01 -39.90 By element: Atomic # 1 Polarization: -2.78 SS G_CDS: -2.49 Total: -5.27 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.47 Total: -4.40 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.65 Total: -18.73 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.07 Total: -5.84 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.47 Total: -0.76 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.89 -6.01 -39.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885596848.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.705 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds