Wall clock time and date at job start Thu Apr 9 2020 13:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99748 * 2 1 4 4 H 1.48504 * 109.47444 * 269.99796 * 3 2 1 5 5 H 1.48500 * 109.47234 * 30.00073 * 3 2 1 6 6 H 1.48502 * 109.46781 * 150.00358 * 3 2 1 7 7 C 1.37874 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00580 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47260 * 180.02562 * 9 7 2 11 11 O 1.45195 * 109.46924 * 180.02562 * 10 9 7 12 12 C 1.34803 * 117.00138 * 179.97438 * 11 10 9 13 13 O 1.21558 * 119.99753 * 0.02562 * 12 11 10 14 14 C 1.47032 * 120.00301 * 179.97438 * 12 11 10 15 15 C 1.36107 * 123.47043 * 5.71329 * 14 12 11 16 16 S 1.70447 * 110.80195 * 180.02562 * 15 14 12 17 17 C 1.75499 * 92.45650 * 0.02562 * 16 15 14 18 18 C 1.32736 * 110.59918 * 359.97438 * 17 16 15 19 19 C 1.50708 * 123.45459 * 180.02562 * 18 17 16 20 20 F 1.39898 * 109.46977 * 116.06011 * 19 18 17 21 21 F 1.39898 * 109.46927 * 236.06138 * 19 18 17 22 22 H 0.97000 * 119.99687 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46712 * 60.00037 * 9 7 2 24 24 H 1.08997 * 109.46535 * 300.00131 * 9 7 2 25 25 H 1.08996 * 109.47552 * 59.99962 * 10 9 7 26 26 H 1.09001 * 109.47181 * 299.99968 * 10 9 7 27 27 H 1.07992 * 124.60122 * 0.02562 * 15 14 12 28 28 H 1.08003 * 124.69852 * 180.26498 * 17 16 15 29 29 H 1.08993 * 109.46965 * 356.05807 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9195 -0.0011 12 6 2.2535 -6.0501 -0.0018 13 8 3.4674 -5.9864 -0.0013 14 6 1.5860 -7.3601 -0.0018 15 6 0.2386 -7.5161 -0.1143 16 16 -0.1850 -9.1667 -0.0767 17 6 1.4876 -9.6696 0.0955 18 6 2.2925 -8.6144 0.1185 19 6 3.7900 -8.7147 0.2560 20 9 4.3986 -8.2222 -0.9034 21 9 4.2085 -7.9617 1.3583 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8720 -3.6044 0.8894 26 1 2.8720 -3.6043 -0.8905 27 1 -0.4665 -6.7042 -0.2139 28 1 1.8167 -10.6957 0.1676 29 1 4.0726 -9.7574 0.3999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885596848.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:44:17 Heat of formation + Delta-G solvation = -183.858157 kcal Electronic energy + Delta-G solvation = -18691.048738 eV Core-core repulsion = 15147.740771 eV Total energy + Delta-G solvation = -3543.307966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.77291 -47.82296 -41.44599 -38.72262 -37.46358 -35.48810 -32.64174 -31.70693 -28.05590 -27.10645 -25.58346 -23.40339 -22.52633 -20.38304 -19.17629 -18.97149 -18.39721 -18.07799 -17.92297 -17.54883 -17.15421 -16.67696 -16.34991 -15.30370 -14.67161 -14.64128 -14.45277 -14.21134 -14.19019 -14.10853 -13.98083 -13.55261 -13.14839 -13.08635 -12.68145 -12.61950 -12.49681 -11.95730 -11.82018 -11.55450 -11.53198 -11.36583 -10.64568 -10.27065 -9.58783 -8.30428 -6.43826 -0.45581 0.37590 0.43831 0.66876 1.38586 1.40947 1.51877 1.69687 1.87546 2.38023 2.99680 3.03814 3.38439 3.46360 3.80655 4.01387 4.12649 4.15677 4.20425 4.34797 4.46436 4.62545 4.79404 4.93172 5.19951 5.40957 5.46374 5.69300 6.02666 6.65293 6.70060 7.25880 8.82372 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.027115 B = 0.004061 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.377523 B = 6893.153238 C = 7739.431614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.034 3.966 10 C 0.093 3.907 11 O -0.361 6.361 12 C 0.504 3.496 13 O -0.524 6.524 14 C -0.164 4.164 15 C -0.196 4.196 16 S 0.325 5.675 17 C -0.180 4.180 18 C -0.172 4.172 19 C 0.325 3.675 20 F -0.214 7.214 21 F -0.216 7.216 22 H 0.269 0.731 23 H 0.008 0.992 24 H 0.007 0.993 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.184 0.816 28 H 0.230 0.770 29 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 -25.488 0.241 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.081 0.919 9 C -0.003 4.003 10 C 0.020 3.980 11 O -0.278 6.278 12 C 0.348 3.652 13 O -0.415 6.415 14 C -0.179 4.179 15 C -0.334 4.334 16 S 0.593 5.407 17 C -0.315 4.315 18 C -0.183 4.183 19 C 0.270 3.730 20 F -0.196 7.196 21 F -0.197 7.197 22 H 0.078 0.922 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.201 0.799 28 H 0.246 0.754 29 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.727 -26.069 0.155 26.126 hybrid contribution 1.848 2.494 0.041 3.104 sum 0.120 -23.574 0.195 23.576 Atomic orbital electron populations 1.70090 1.07771 1.28366 1.50252 1.25964 0.95891 1.03391 0.93929 0.85305 0.78496 0.77647 0.78755 1.19426 1.20082 1.18897 1.21358 0.93656 0.91248 1.52762 0.91898 1.18963 0.94211 0.90372 0.96739 1.23173 0.95193 0.78847 1.00789 1.86542 1.42040 1.15540 1.83696 1.21148 0.85675 0.85512 0.72864 1.90851 1.15673 1.88396 1.46585 1.19315 0.93783 0.90165 1.14685 1.26230 0.98333 1.07009 1.01825 1.82846 1.03120 0.91148 1.63598 1.25955 0.97244 1.03883 1.04441 1.20409 0.96692 0.91729 1.09454 1.20687 0.85960 0.95084 0.71251 1.92981 1.84631 1.90814 1.51147 1.92982 1.91211 1.80701 1.54836 0.92223 0.97358 0.97412 0.92511 0.92442 0.79900 0.75392 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.29 21.45 0.28 -55.96 15 2 C 0.01 0.43 5.46 84.65 0.46 0.89 15 3 Si 0.97 44.64 29.54 68.60 2.03 46.67 15 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.55 -32.48 9.11 25.60 0.23 -32.25 15 8 H 0.06 3.57 7.74 -2.91 -0.02 3.55 15 9 C 0.03 1.92 5.35 29.85 0.16 2.08 15 10 C 0.09 4.56 5.42 71.98 0.39 4.95 15 11 O -0.36 -16.11 9.89 -57.14 -0.56 -16.67 15 12 C 0.50 20.63 7.85 70.13 0.55 21.18 15 13 O -0.52 -23.98 12.84 19.65 0.25 -23.73 15 14 C -0.16 -4.95 5.97 -19.88 -0.12 -5.07 15 15 C -0.20 -4.43 10.56 67.32 0.71 -3.72 15 16 S 0.33 3.68 23.02 -56.49 -1.30 2.38 15 17 C -0.18 -2.07 10.85 66.65 0.72 -1.35 15 18 C -0.17 -3.86 5.45 -19.45 -0.11 -3.97 15 19 C 0.33 7.71 4.97 71.24 0.35 8.07 15 20 F -0.21 -6.75 15.99 44.97 0.72 -6.03 15 21 F -0.22 -6.97 15.61 44.97 0.70 -6.26 15 22 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 23 H 0.01 0.47 8.14 -2.39 -0.02 0.45 15 24 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 25 H 0.06 2.78 8.14 -2.39 -0.02 2.76 15 26 H 0.06 2.80 8.14 -2.39 -0.02 2.78 15 27 H 0.18 4.15 8.02 -2.91 -0.02 4.13 15 28 H 0.23 0.26 8.06 -2.91 -0.02 0.23 15 29 H 0.18 1.82 8.04 -2.39 -0.02 1.80 15 Total: -1.00 -78.53 285.21 6.66 -71.87 By element: Atomic # 1 Polarization: -4.27 SS G_CDS: 1.18 Total: -3.09 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 3.36 Total: -9.19 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.28 Total: -55.96 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -0.31 Total: -40.40 kcal Atomic # 9 Polarization: -13.71 SS G_CDS: 1.42 Total: -12.29 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.30 Total: 2.38 kcal Total: -78.53 6.66 -71.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885596848.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.988 kcal (2) G-P(sol) polarization free energy of solvation -78.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds