Wall clock time and date at job start Thu Apr 9 2020 13:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 C 1.50707 * 109.46666 * 119.99835 * 2 1 3 5 5 H 1.08001 * 120.00024 * 120.00213 * 4 2 1 6 6 C 1.37876 * 120.00309 * 299.99270 * 4 2 1 7 7 N 1.31514 * 119.99578 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00064 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47381 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47238 * 120.00633 * 8 6 4 11 11 H 1.48505 * 109.47021 * 240.00520 * 8 6 4 12 12 O 1.45200 * 109.46954 * 239.99203 * 2 1 3 13 13 C 1.34802 * 116.99280 * 90.00707 * 12 2 1 14 14 O 1.21556 * 120.00240 * 359.97438 * 13 12 2 15 15 C 1.47035 * 119.99478 * 179.97438 * 13 12 2 16 16 C 1.36105 * 123.47891 * 0.02562 * 15 13 12 17 17 S 1.70447 * 110.80850 * 179.73069 * 16 15 13 18 18 C 1.75498 * 92.45366 * 359.97438 * 17 16 15 19 19 C 1.32742 * 110.60324 * 359.97438 * 18 17 16 20 20 C 1.50704 * 123.45615 * 180.02562 * 19 18 17 21 21 F 1.39890 * 109.46852 * 119.97871 * 20 19 18 22 22 F 1.39902 * 109.46567 * 239.97668 * 20 19 18 23 23 H 1.08999 * 109.47264 * 59.99965 * 1 2 3 24 24 H 1.08995 * 109.47545 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47123 * 300.00327 * 1 2 3 26 26 H 0.97004 * 120.00022 * 179.97438 * 7 6 4 27 27 H 1.07998 * 124.59195 * 359.72597 * 16 15 13 28 28 H 1.08001 * 124.70020 * 180.02562 * 18 17 16 29 29 H 1.08998 * 109.46900 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1480 -2.2856 3.6040 10 1 3.1471 -0.1857 4.8162 11 1 1.1675 -1.5865 4.8166 12 8 2.0139 -0.6847 -1.1855 13 6 2.2180 0.0670 -2.2857 14 8 1.9969 1.2619 -2.2550 15 6 2.7079 -0.5585 -3.5228 16 6 2.9775 -1.8878 -3.6362 17 16 3.5182 -2.2640 -5.2083 18 6 3.3811 -0.5959 -5.7361 19 6 2.9454 0.1731 -4.7457 20 6 2.7224 1.6573 -4.8827 21 9 1.3803 1.9531 -4.6213 22 9 3.5361 2.3372 -3.9701 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7082 1.1611 3.4844 27 1 2.8643 -2.6066 -2.8382 28 1 3.6175 -0.2439 -6.7294 29 1 2.9728 1.9703 -5.8962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892691756.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:44:20 Heat of formation + Delta-G solvation = -156.809790 kcal Electronic energy + Delta-G solvation = -19308.369684 eV Core-core repulsion = 15766.234623 eV Total energy + Delta-G solvation = -3542.135061 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.56373 -46.57648 -39.55603 -37.43135 -35.45410 -33.24323 -30.97917 -29.41371 -26.79691 -25.30304 -24.47133 -22.22541 -20.29776 -18.91050 -18.04882 -17.39154 -16.85166 -16.58351 -16.44819 -15.83693 -15.08501 -14.97521 -14.34274 -13.48166 -13.40122 -13.14182 -13.02903 -12.92062 -12.89777 -12.41187 -12.10918 -11.84116 -11.48778 -11.19418 -11.06537 -10.84372 -10.80244 -10.33501 -10.26675 -9.65912 -9.50067 -9.28833 -8.86997 -8.63515 -8.47052 -6.16428 -4.23357 0.63928 1.26501 1.63626 1.66280 3.24600 3.30764 3.35431 3.61151 3.62488 3.92588 4.30545 4.36762 4.52559 4.90448 5.16622 5.22538 5.24673 5.53083 5.61356 5.86489 6.09229 6.68618 6.93096 6.95666 7.18492 7.61619 7.75823 7.95946 8.16000 8.65084 8.89923 9.41790 10.91123 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.024056 B = 0.005334 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.669136 B = 5247.767894 C = 5958.616257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.217 3.783 3 H 0.049 0.951 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.912 3.088 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.352 6.352 13 C 0.506 3.494 14 O -0.494 6.494 15 C -0.113 4.113 16 C -0.183 4.183 17 S 0.206 5.794 18 C -0.206 4.206 19 C -0.139 4.139 20 C 0.343 3.657 21 F -0.188 7.188 22 F -0.187 7.187 23 H 0.017 0.983 24 H 0.036 0.964 25 H 0.100 0.900 26 H 0.266 0.734 27 H 0.187 0.813 28 H 0.178 0.822 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 -4.690 -18.073 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.269 6.269 13 C 0.347 3.653 14 O -0.384 6.384 15 C -0.127 4.127 16 C -0.321 4.321 17 S 0.473 5.527 18 C -0.342 4.342 19 C -0.152 4.152 20 C 0.287 3.713 21 F -0.169 7.169 22 F -0.168 7.168 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.204 0.796 28 H 0.195 0.805 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.196 -5.555 -18.534 20.034 hybrid contribution -0.316 1.038 1.774 2.080 sum 4.880 -4.518 -16.759 18.031 Atomic orbital electron populations 1.22157 0.97502 1.00047 1.01516 1.20668 0.91407 0.94057 0.77413 0.93368 1.21047 1.32454 1.13446 0.88853 0.91327 1.24889 0.94958 0.95111 0.99052 1.69916 1.36043 1.22547 1.24059 0.86217 0.78603 0.79461 0.81825 1.19522 1.20742 1.20721 1.86532 1.76184 1.43156 1.21007 1.20173 0.75755 0.85334 0.84065 1.90860 1.47579 1.15550 1.84365 1.19488 1.07222 0.92596 0.93393 1.25928 1.03049 0.99810 1.03267 1.82981 1.61787 1.05977 1.01953 1.25282 1.07930 0.97710 1.03281 1.20475 1.04756 0.96740 0.93207 1.19771 0.74053 0.85742 0.91740 1.93045 1.34515 1.93821 1.95523 1.93054 1.72392 1.80800 1.70593 0.96382 0.94521 0.88207 0.92444 0.79577 0.80505 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.33 37.15 0.35 -3.71 15 2 C 0.22 6.02 2.56 -27.88 -0.07 5.95 15 3 H 0.05 1.48 7.16 -51.93 -0.37 1.11 15 4 C -0.52 -14.87 8.90 -34.44 -0.31 -15.17 15 5 H 0.07 1.92 7.81 -52.49 -0.41 1.51 15 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -25.70 11.32 55.43 0.63 -25.07 15 8 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 15 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 12 O -0.35 -8.72 9.52 -40.77 -0.39 -9.11 15 13 C 0.51 11.51 7.89 34.30 0.27 11.78 15 14 O -0.49 -12.48 12.24 -19.31 -0.24 -12.71 15 15 C -0.11 -1.96 5.98 -104.65 -0.63 -2.59 15 16 C -0.18 -2.52 10.56 29.97 0.32 -2.21 15 17 S 0.21 1.92 23.02 -107.50 -2.47 -0.56 15 18 C -0.21 -2.02 10.85 28.85 0.31 -1.71 15 19 C -0.14 -1.97 5.44 -104.05 -0.57 -2.54 15 20 C 0.34 4.97 4.97 36.01 0.18 5.15 15 21 F -0.19 -3.35 15.80 2.25 0.04 -3.32 15 22 F -0.19 -3.38 15.81 2.25 0.04 -3.34 15 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 15 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.10 2.78 6.07 -51.93 -0.32 2.46 15 26 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 27 H 0.19 2.46 8.02 -52.49 -0.42 2.04 15 28 H 0.18 1.00 8.06 -52.49 -0.42 0.58 15 29 H 0.11 0.98 8.04 -51.93 -0.42 0.57 15 LS Contribution 280.10 15.07 4.22 4.22 Total: -1.00 -33.56 280.10 -5.78 -39.34 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -2.34 Total: -2.36 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.24 Total: -3.41 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.63 Total: -25.07 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.62 Total: -21.82 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.07 Total: -6.66 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.47 Total: -0.56 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.56 -5.78 -39.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892691756.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.474 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds