Wall clock time and date at job start Thu Apr 9 2020 13:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47430 * 2 1 4 4 C 1.50707 * 109.46666 * 119.99835 * 2 1 3 5 5 H 1.08001 * 120.00024 * 120.00213 * 4 2 1 6 6 C 1.37876 * 120.00309 * 299.99270 * 4 2 1 7 7 N 1.31514 * 119.99578 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00064 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47381 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47238 * 120.00633 * 8 6 4 11 11 H 1.48505 * 109.47021 * 240.00520 * 8 6 4 12 12 O 1.45200 * 109.46954 * 239.99203 * 2 1 3 13 13 C 1.34802 * 116.99280 * 90.00707 * 12 2 1 14 14 O 1.21556 * 120.00240 * 359.97438 * 13 12 2 15 15 C 1.47035 * 119.99478 * 179.97438 * 13 12 2 16 16 C 1.36105 * 123.47891 * 0.02562 * 15 13 12 17 17 S 1.70447 * 110.80850 * 179.73069 * 16 15 13 18 18 C 1.75498 * 92.45366 * 359.97438 * 17 16 15 19 19 C 1.32742 * 110.60324 * 359.97438 * 18 17 16 20 20 C 1.50704 * 123.45615 * 180.02562 * 19 18 17 21 21 F 1.39890 * 109.46852 * 119.97871 * 20 19 18 22 22 F 1.39902 * 109.46567 * 239.97668 * 20 19 18 23 23 H 1.08999 * 109.47264 * 59.99965 * 1 2 3 24 24 H 1.08995 * 109.47545 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47123 * 300.00327 * 1 2 3 26 26 H 0.97004 * 120.00022 * 179.97438 * 7 6 4 27 27 H 1.07998 * 124.59195 * 359.72597 * 16 15 13 28 28 H 1.08001 * 124.70020 * 180.02562 * 18 17 16 29 29 H 1.08998 * 109.46900 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1480 -2.2856 3.6040 10 1 3.1471 -0.1857 4.8162 11 1 1.1675 -1.5865 4.8166 12 8 2.0139 -0.6847 -1.1855 13 6 2.2180 0.0670 -2.2857 14 8 1.9969 1.2619 -2.2550 15 6 2.7079 -0.5585 -3.5228 16 6 2.9775 -1.8878 -3.6362 17 16 3.5182 -2.2640 -5.2083 18 6 3.3811 -0.5959 -5.7361 19 6 2.9454 0.1731 -4.7457 20 6 2.7224 1.6573 -4.8827 21 9 1.3803 1.9531 -4.6213 22 9 3.5361 2.3372 -3.9701 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7082 1.1611 3.4844 27 1 2.8643 -2.6066 -2.8382 28 1 3.6175 -0.2439 -6.7294 29 1 2.9728 1.9703 -5.8962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892691756.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:44:20 Heat of formation + Delta-G solvation = -178.352827 kcal Electronic energy + Delta-G solvation = -19309.303860 eV Core-core repulsion = 15766.234623 eV Total energy + Delta-G solvation = -3543.069237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.75346 -47.80972 -41.27165 -38.67010 -37.32081 -35.35977 -32.28626 -31.33238 -27.86486 -27.49838 -25.81762 -23.80159 -22.03280 -20.28043 -19.28506 -18.72223 -18.41760 -18.05455 -17.99504 -17.19334 -16.79641 -16.76062 -16.06469 -14.95649 -14.78728 -14.40755 -14.20947 -14.17651 -14.09685 -14.08220 -13.77770 -13.50115 -13.19626 -13.02732 -12.84643 -12.52958 -12.42923 -12.16035 -11.86736 -11.62095 -11.37261 -11.01861 -10.63955 -10.23565 -9.53372 -8.31516 -6.49322 -0.40028 0.41619 0.50531 0.68803 1.39486 1.41286 1.54972 1.98118 2.01580 2.40071 2.98992 3.02155 3.40193 3.50093 3.99385 4.04280 4.13780 4.36091 4.49273 4.51711 4.73508 4.77137 4.82426 4.97934 5.13761 5.43976 5.57090 5.86602 6.02492 6.56181 6.92080 7.22530 8.76986 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.024056 B = 0.005334 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.669136 B = 5247.767894 C = 5958.616257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.219 3.781 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.988 3.012 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.269 1.269 12 O -0.359 6.359 13 C 0.495 3.505 14 O -0.533 6.533 15 C -0.162 4.162 16 C -0.196 4.196 17 S 0.326 5.674 18 C -0.179 4.179 19 C -0.174 4.174 20 C 0.325 3.675 21 F -0.216 7.216 22 F -0.217 7.217 23 H 0.018 0.982 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.272 0.728 27 H 0.183 0.817 28 H 0.230 0.770 29 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.342 -7.081 -20.282 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.166 3.834 3 H 0.021 0.979 4 C -0.585 4.585 5 H 0.087 0.913 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.811 3.189 9 H -0.185 1.185 10 H -0.201 1.201 11 H -0.194 1.194 12 O -0.276 6.276 13 C 0.339 3.661 14 O -0.425 6.425 15 C -0.177 4.177 16 C -0.334 4.334 17 S 0.594 5.406 18 C -0.315 4.315 19 C -0.186 4.186 20 C 0.269 3.731 21 F -0.198 7.198 22 F -0.199 7.199 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.200 0.800 28 H 0.247 0.753 29 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.616 -7.957 -20.778 23.212 hybrid contribution -0.695 1.684 2.278 2.917 sum 5.920 -6.273 -18.500 20.412 Atomic orbital electron populations 1.21966 0.96783 1.00366 1.00641 1.20355 0.91996 0.92021 0.79005 0.97887 1.21304 1.33516 1.13928 0.89762 0.91313 1.25908 0.94661 0.95678 1.02299 1.70042 1.36564 1.23724 1.25251 0.85062 0.78374 0.78358 0.77140 1.18545 1.20115 1.19440 1.86508 1.76692 1.43173 1.21191 1.21257 0.74762 0.85233 0.84869 1.90818 1.49511 1.17185 1.84992 1.19402 1.11521 0.94471 0.92287 1.26188 1.01982 0.98516 1.06752 1.82668 1.57461 1.03957 0.96532 1.25937 1.03665 0.97776 1.04106 1.20430 1.08114 0.96843 0.93185 1.20720 0.72276 0.86366 0.93698 1.92974 1.36821 1.94110 1.95870 1.92981 1.73115 1.81579 1.72193 0.96313 0.93394 0.89888 0.91922 0.79957 0.75331 0.80499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.73 9.33 71.98 0.67 -7.06 15 2 C 0.22 12.94 2.56 29.85 0.08 13.01 15 3 H 0.00 0.22 7.16 -2.39 -0.02 0.20 15 4 C -0.55 -32.42 8.90 25.60 0.23 -32.19 15 5 H 0.07 3.95 7.81 -2.91 -0.02 3.93 15 6 C 0.01 0.80 5.30 84.65 0.45 1.25 15 7 N -0.92 -54.68 11.32 21.45 0.24 -54.44 15 8 Si 0.99 43.96 29.54 68.60 2.03 45.98 15 9 H -0.26 -11.16 7.11 99.48 0.71 -10.45 15 10 H -0.28 -11.95 7.11 99.48 0.71 -11.25 15 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 12 O -0.36 -18.86 9.52 -57.14 -0.54 -19.40 15 13 C 0.49 23.98 7.89 70.13 0.55 24.53 15 14 O -0.53 -29.10 12.24 19.65 0.24 -28.86 15 15 C -0.16 -5.69 5.98 -19.88 -0.12 -5.81 15 16 C -0.20 -5.14 10.56 67.32 0.71 -4.43 15 17 S 0.33 4.48 23.02 -56.49 -1.30 3.17 15 18 C -0.18 -2.62 10.85 66.65 0.72 -1.90 15 19 C -0.17 -4.67 5.44 -19.45 -0.11 -4.78 15 20 C 0.32 9.22 4.97 71.24 0.35 9.57 15 21 F -0.22 -8.00 15.80 44.97 0.71 -7.29 15 22 F -0.22 -8.15 15.81 44.97 0.71 -7.44 15 23 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 24 H 0.05 2.46 8.14 -2.39 -0.02 2.44 15 25 H 0.08 4.85 6.07 -2.39 -0.01 4.84 15 26 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 27 H 0.18 4.74 8.02 -2.91 -0.02 4.71 15 28 H 0.23 0.86 8.06 -2.91 -0.02 0.83 15 29 H 0.18 2.52 8.04 -2.39 -0.02 2.50 15 Total: -1.00 -80.68 280.10 6.82 -73.86 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.19 Total: 2.22 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 3.54 Total: -7.81 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.24 Total: -54.44 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.30 Total: -48.26 kcal Atomic # 9 Polarization: -16.15 SS G_CDS: 1.42 Total: -14.73 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.30 Total: 3.17 kcal Total: -80.68 6.82 -73.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892691756.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.491 kcal (2) G-P(sol) polarization free energy of solvation -80.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds