Wall clock time and date at job start Thu Apr 9 2020 13:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47587 * 2 1 4 4 N 1.28441 * 125.18638 * 274.62899 * 3 2 1 5 5 C 1.30864 * 110.92912 * 179.97438 * 4 3 2 6 6 C 1.39675 * 107.85871 * 359.72991 * 5 4 3 7 7 C 1.36598 * 125.19494 * 94.61961 * 3 2 1 8 8 C 1.47161 * 126.88150 * 0.02562 * 7 3 2 9 9 O 1.21630 * 119.99941 * 350.27871 * 8 7 3 10 10 N 1.34773 * 120.00076 * 170.00925 * 8 7 3 11 11 C 1.46499 * 120.00347 * 182.08514 * 10 8 7 12 12 C 1.50699 * 109.47277 * 89.99397 * 11 10 8 13 13 H 1.08007 * 119.99899 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99995 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00238 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99763 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47221 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47324 * 120.00350 * 16 14 12 19 19 H 1.48501 * 109.46877 * 240.00698 * 16 14 12 20 20 C 1.46498 * 119.99934 * 2.08376 * 10 8 7 21 21 C 1.53000 * 109.47422 * 82.23470 * 20 10 8 22 22 C 1.47190 * 109.47622 * 184.64747 * 21 20 10 23 23 N 7.61902 * 104.80284 * 18.35306 * 2 1 3 24 24 H 1.09000 * 109.47138 * 295.02540 * 1 2 3 25 25 H 1.09005 * 109.46906 * 55.01920 * 1 2 3 26 26 H 1.08990 * 109.47228 * 175.01961 * 1 2 3 27 27 H 1.08998 * 109.47619 * 239.99407 * 2 1 3 28 28 H 1.09003 * 109.47080 * 119.99824 * 2 1 3 29 29 H 1.08004 * 126.07512 * 180.02562 * 5 4 3 30 30 H 1.07998 * 127.32482 * 180.27556 * 6 5 4 31 31 H 1.09002 * 109.47602 * 210.00032 * 11 10 8 32 32 H 1.09005 * 109.47103 * 329.99819 * 11 10 8 33 33 H 0.97000 * 120.00116 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.47423 * 202.23441 * 20 10 8 35 35 H 1.09002 * 109.47009 * 322.23682 * 20 10 8 36 36 H 1.08998 * 109.46871 * 304.64631 * 21 20 10 37 37 H 1.09000 * 109.47263 * 64.64224 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1853 2.1072 -1.0463 5 6 2.6322 3.2945 -0.7250 6 6 2.7612 3.3419 0.6649 7 6 2.3657 2.0935 1.1126 8 6 2.3215 1.6287 2.5082 9 8 1.7827 0.5729 2.7808 10 7 2.8828 2.3704 3.4836 11 6 2.8790 1.8862 4.8662 12 6 4.1223 1.0721 5.1168 13 1 4.8433 0.9300 4.3253 14 6 4.3397 0.5096 6.3566 15 7 3.4620 0.6830 7.3205 16 14 5.8812 -0.4989 6.6673 17 1 6.7019 -0.5424 5.4305 18 1 6.6683 0.1243 7.7615 19 1 5.4989 -1.8799 7.0571 20 6 3.4967 3.6609 3.1611 21 6 2.4119 4.7372 3.0861 22 6 3.0122 6.0096 2.6535 23 7 3.4766 6.9915 2.3194 24 1 -0.3633 0.4347 0.9312 25 1 -0.3633 0.5892 -0.8421 26 1 -0.3633 -1.0237 -0.0892 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.8564 4.0970 -1.4122 30 1 3.1004 4.1747 1.2631 31 1 2.8573 2.7357 5.5488 32 1 1.9987 1.2650 5.0313 33 1 3.6148 0.2869 8.1927 34 1 4.2169 3.9243 3.9357 35 1 4.0061 3.5908 2.2000 36 1 1.6481 4.4339 2.3701 37 1 1.9583 4.8651 4.0689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613950592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:47:52 Heat of formation + Delta-G solvation = 93.568862 kcal Electronic energy + Delta-G solvation = -21531.718222 eV Core-core repulsion = 18312.335649 eV Total energy + Delta-G solvation = -3219.382573 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.46001 -39.11917 -37.12797 -35.60315 -34.19314 -33.11786 -31.31664 -30.48108 -29.61349 -27.34820 -24.49639 -23.91616 -23.45098 -22.02113 -20.74270 -19.01634 -17.74321 -16.90584 -16.53672 -16.38247 -15.79230 -15.31837 -15.10199 -14.52939 -14.25334 -14.16979 -13.80960 -13.47121 -13.14497 -12.85569 -12.59752 -12.46812 -12.24581 -12.12705 -11.90983 -11.81850 -11.38185 -11.19042 -11.06700 -10.93781 -10.76046 -10.42651 -10.24340 -9.78691 -9.34875 -9.05122 -8.81270 -8.54176 -7.97951 -6.15827 -4.20921 1.54224 2.53453 2.71002 2.73570 2.77474 3.24088 3.32328 3.35243 3.54060 3.64315 4.10618 4.35947 4.62168 4.78096 5.01535 5.03393 5.08307 5.08943 5.19957 5.28184 5.34175 5.45052 5.58730 5.65566 5.75249 5.82895 5.93067 6.07212 6.10514 6.58392 6.81848 6.89021 7.22200 7.31410 7.53016 7.79877 8.04382 8.08100 8.21658 8.65264 8.85697 9.45021 10.92289 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.006533 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.577096 B = 4285.198778 C = 5671.431613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 N -0.256 5.256 4 N -0.287 5.287 5 C -0.007 4.007 6 C -0.228 4.228 7 C -0.018 4.018 8 C 0.578 3.422 9 O -0.532 6.532 10 N -0.575 5.575 11 C 0.246 3.754 12 C -0.531 4.531 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.095 3.905 21 C -0.061 4.061 22 C 0.214 3.786 23 N -0.437 5.437 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.181 0.819 30 H 0.176 0.824 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.264 0.736 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 3.703 -11.553 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.043 5.043 4 N -0.119 5.119 5 C -0.184 4.184 6 C -0.256 4.256 7 C -0.148 4.148 8 C 0.363 3.637 9 O -0.409 6.409 10 N -0.305 5.305 11 C 0.127 3.873 12 C -0.570 4.570 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.031 4.031 21 C -0.102 4.102 22 C -0.104 4.104 23 N -0.114 5.114 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.111 0.889 28 H 0.138 0.862 29 H 0.198 0.802 30 H 0.193 0.807 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.032 3.718 -12.580 13.724 hybrid contribution 0.935 -0.354 1.053 1.452 sum -3.096 3.364 -11.527 12.401 Atomic orbital electron populations 1.22059 0.93548 1.03199 1.03158 1.22176 0.96225 0.76643 1.05731 1.45826 1.44179 1.12304 1.02032 1.73129 1.19472 1.05150 1.14192 1.23549 1.04452 0.95157 0.95200 1.23179 1.08663 0.98019 0.95761 1.21820 1.08615 0.93675 0.90673 1.16896 0.79849 0.84374 0.82536 1.90766 1.44986 1.22347 1.82819 1.47927 1.54615 1.17658 1.10282 1.19481 0.98840 0.95546 0.73400 1.21442 1.05783 1.32607 0.97186 0.92188 1.24905 0.96896 0.96166 0.95884 1.69922 1.35089 1.44766 1.03298 0.86454 0.82816 0.80032 0.78213 1.19768 1.20884 1.20840 1.21969 0.94232 0.82480 1.04411 1.20104 0.99741 0.85463 1.04925 1.28993 0.93666 0.94549 0.93222 1.81236 1.08961 1.11738 1.09467 0.91239 0.92155 0.90328 0.88919 0.86243 0.80182 0.80742 0.94178 0.93176 0.92617 0.88162 0.88680 0.86717 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.24 37.16 0.38 -1.48 16 2 C 0.11 1.48 6.56 -4.04 -0.03 1.45 16 3 N -0.26 -3.88 3.35 -57.14 -0.19 -4.08 16 4 N -0.29 -4.22 11.90 30.59 0.36 -3.86 16 5 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 6 C -0.23 -3.04 7.48 -38.98 -0.29 -3.33 16 7 C -0.02 -0.29 6.70 -82.06 -0.55 -0.84 16 8 C 0.58 10.87 7.54 -12.64 -0.10 10.78 16 9 O -0.53 -11.61 14.32 5.25 0.08 -11.53 16 10 N -0.57 -10.51 2.48 -176.43 -0.44 -10.94 16 11 C 0.25 5.63 5.14 -5.19 -0.03 5.60 16 12 C -0.53 -13.80 9.39 -34.44 -0.32 -14.12 16 13 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 16 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.09 1.30 4.93 -4.04 -0.02 1.28 16 21 C -0.06 -0.66 4.99 -29.52 -0.15 -0.80 16 22 C 0.21 2.52 14.39 -20.75 -0.30 2.22 16 23 N -0.44 -6.18 18.54 42.17 0.78 -5.40 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.12 1.78 6.28 -51.93 -0.33 1.46 16 29 H 0.18 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.18 2.02 2.59 -52.49 -0.14 1.88 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.05 1.30 7.40 -51.93 -0.38 0.92 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.10 1.39 8.01 -51.93 -0.42 0.97 16 35 H 0.10 1.23 4.82 -51.93 -0.25 0.98 16 36 H 0.11 1.17 6.33 -51.93 -0.33 0.84 16 37 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 317.97 15.07 4.79 4.79 Total: -1.00 -31.34 317.97 -4.95 -36.29 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.34 Total: 0.98 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.71 Total: 2.06 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 1.25 Total: -48.31 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.34 -4.95 -36.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613950592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.862 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds