Wall clock time and date at job start Thu Apr 9 2020 13:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47587 * 2 1 4 4 N 1.28441 * 125.18638 * 274.62899 * 3 2 1 5 5 C 1.30864 * 110.92912 * 179.97438 * 4 3 2 6 6 C 1.39675 * 107.85871 * 359.72991 * 5 4 3 7 7 C 1.36598 * 125.19494 * 94.61961 * 3 2 1 8 8 C 1.47161 * 126.88150 * 0.02562 * 7 3 2 9 9 O 1.21630 * 119.99941 * 350.27871 * 8 7 3 10 10 N 1.34773 * 120.00076 * 170.00925 * 8 7 3 11 11 C 1.46499 * 120.00347 * 182.08514 * 10 8 7 12 12 C 1.50699 * 109.47277 * 89.99397 * 11 10 8 13 13 H 1.08007 * 119.99899 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99995 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00238 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99763 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47221 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47324 * 120.00350 * 16 14 12 19 19 H 1.48501 * 109.46877 * 240.00698 * 16 14 12 20 20 C 1.46498 * 119.99934 * 2.08376 * 10 8 7 21 21 C 1.53000 * 109.47422 * 82.23470 * 20 10 8 22 22 C 1.47190 * 109.47622 * 184.64747 * 21 20 10 23 23 N 7.61902 * 104.80284 * 18.35306 * 2 1 3 24 24 H 1.09000 * 109.47138 * 295.02540 * 1 2 3 25 25 H 1.09005 * 109.46906 * 55.01920 * 1 2 3 26 26 H 1.08990 * 109.47228 * 175.01961 * 1 2 3 27 27 H 1.08998 * 109.47619 * 239.99407 * 2 1 3 28 28 H 1.09003 * 109.47080 * 119.99824 * 2 1 3 29 29 H 1.08004 * 126.07512 * 180.02562 * 5 4 3 30 30 H 1.07998 * 127.32482 * 180.27556 * 6 5 4 31 31 H 1.09002 * 109.47602 * 210.00032 * 11 10 8 32 32 H 1.09005 * 109.47103 * 329.99819 * 11 10 8 33 33 H 0.97000 * 120.00116 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.47423 * 202.23441 * 20 10 8 35 35 H 1.09002 * 109.47009 * 322.23682 * 20 10 8 36 36 H 1.08998 * 109.46871 * 304.64631 * 21 20 10 37 37 H 1.09000 * 109.47263 * 64.64224 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1853 2.1072 -1.0463 5 6 2.6322 3.2945 -0.7250 6 6 2.7612 3.3419 0.6649 7 6 2.3657 2.0935 1.1126 8 6 2.3215 1.6287 2.5082 9 8 1.7827 0.5729 2.7808 10 7 2.8828 2.3704 3.4836 11 6 2.8790 1.8862 4.8662 12 6 4.1223 1.0721 5.1168 13 1 4.8433 0.9300 4.3253 14 6 4.3397 0.5096 6.3566 15 7 3.4620 0.6830 7.3205 16 14 5.8812 -0.4989 6.6673 17 1 6.7019 -0.5424 5.4305 18 1 6.6683 0.1243 7.7615 19 1 5.4989 -1.8799 7.0571 20 6 3.4967 3.6609 3.1611 21 6 2.4119 4.7372 3.0861 22 6 3.0122 6.0096 2.6535 23 7 3.4766 6.9915 2.3194 24 1 -0.3633 0.4347 0.9312 25 1 -0.3633 0.5892 -0.8421 26 1 -0.3633 -1.0237 -0.0892 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.8564 4.0970 -1.4122 30 1 3.1004 4.1747 1.2631 31 1 2.8573 2.7357 5.5488 32 1 1.9987 1.2650 5.0313 33 1 3.6148 0.2869 8.1927 34 1 4.2169 3.9243 3.9357 35 1 4.0061 3.5908 2.2000 36 1 1.6481 4.4339 2.3701 37 1 1.9583 4.8651 4.0689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613950592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:47:51 Heat of formation + Delta-G solvation = 74.246352 kcal Electronic energy + Delta-G solvation = -21532.556109 eV Core-core repulsion = 18312.335649 eV Total energy + Delta-G solvation = -3220.220460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.59267 -40.54847 -38.30107 -36.89234 -35.35894 -34.91426 -32.76194 -31.66204 -30.64889 -29.12578 -25.74060 -25.38314 -24.74093 -23.20587 -22.08162 -20.24242 -18.91366 -18.43760 -18.09854 -17.64604 -17.02027 -16.83448 -16.33313 -16.01479 -15.58124 -15.33145 -15.10938 -14.60633 -14.27350 -14.24298 -13.98888 -13.63800 -13.56245 -13.30176 -13.19804 -13.00692 -12.89172 -12.69319 -12.55492 -12.21092 -12.17973 -12.04833 -11.68427 -11.54179 -10.86094 -10.58871 -10.21135 -9.93267 -9.55948 -8.18822 -6.30827 0.30691 1.38887 1.40445 1.43718 1.53689 1.67540 1.71776 1.80154 2.16747 2.33297 2.44316 3.00577 3.13730 3.54121 3.59205 3.96221 4.03736 4.05992 4.10570 4.21678 4.34716 4.45454 4.54824 4.69296 4.76136 4.82206 4.90720 5.01644 5.09774 5.14940 5.31221 5.53552 5.57600 5.79472 5.82614 6.09972 6.52843 6.58837 6.77466 7.08646 7.22270 7.41121 8.88273 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013779 B = 0.006533 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.577096 B = 4285.198778 C = 5671.431613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.107 3.893 3 N -0.263 5.263 4 N -0.295 5.295 5 C -0.004 4.004 6 C -0.208 4.208 7 C -0.043 4.043 8 C 0.575 3.425 9 O -0.573 6.573 10 N -0.576 5.576 11 C 0.261 3.739 12 C -0.542 4.542 13 H 0.053 0.947 14 C 0.016 3.984 15 N -0.923 5.923 16 Si 0.956 3.044 17 H -0.270 1.270 18 H -0.273 1.273 19 H -0.284 1.284 20 C 0.091 3.909 21 C -0.048 4.048 22 C 0.240 3.760 23 N -0.470 5.470 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.217 0.783 30 H 0.192 0.808 31 H 0.044 0.956 32 H 0.013 0.987 33 H 0.266 0.734 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 4.672 -13.043 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.051 5.051 4 N -0.127 5.127 5 C -0.179 4.179 6 C -0.237 4.237 7 C -0.172 4.172 8 C 0.362 3.638 9 O -0.453 6.453 10 N -0.305 5.305 11 C 0.141 3.859 12 C -0.581 4.581 13 H 0.071 0.929 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.782 3.218 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.210 1.210 20 C -0.033 4.033 21 C -0.089 4.089 22 C -0.077 4.077 23 N -0.148 5.148 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.134 0.866 28 H 0.114 0.886 29 H 0.233 0.767 30 H 0.209 0.791 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.368 4.723 -14.090 15.238 hybrid contribution 0.717 -0.646 1.465 1.754 sum -2.651 4.077 -12.626 13.530 Atomic orbital electron populations 1.21992 0.92392 1.04560 1.02032 1.22275 0.97192 0.76187 1.05624 1.46018 1.44372 1.12837 1.01848 1.73147 1.19682 1.05883 1.13992 1.24170 1.03036 0.95276 0.95444 1.23358 1.06915 0.97144 0.96253 1.21496 1.11191 0.95094 0.89418 1.17273 0.78979 0.83755 0.83761 1.90739 1.46719 1.24179 1.83683 1.47754 1.54929 1.19231 1.08605 1.18973 0.96075 0.94778 0.76074 1.21734 1.06483 1.32860 0.96974 0.92914 1.25661 0.99614 0.97233 0.95863 1.70014 1.36696 1.45834 1.03710 0.85531 0.79613 0.78406 0.78246 1.19468 1.19827 1.20972 1.22171 0.95023 0.81092 1.05005 1.19977 0.98762 0.83915 1.06237 1.28868 0.92655 0.94070 0.92110 1.81283 1.09929 1.12787 1.10786 0.93625 0.91482 0.88070 0.86650 0.88609 0.76675 0.79133 0.93843 0.96914 0.92453 0.88146 0.87424 0.85520 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 10.24 71.98 0.74 -2.69 16 2 C 0.11 2.78 6.56 86.38 0.57 3.34 16 3 N -0.26 -7.70 3.35 -334.69 -1.12 -8.82 16 4 N -0.29 -7.97 11.90 -57.14 -0.68 -8.65 16 5 C 0.00 -0.08 12.03 85.18 1.02 0.94 16 6 C -0.21 -5.02 7.48 22.66 0.17 -4.85 16 7 C -0.04 -1.34 6.70 40.79 0.27 -1.07 16 8 C 0.57 21.92 7.54 86.59 0.65 22.58 16 9 O -0.57 -26.11 14.32 -4.13 -0.06 -26.17 16 10 N -0.58 -21.09 2.48 -830.34 -2.06 -23.14 16 11 C 0.26 12.26 5.14 85.63 0.44 12.70 16 12 C -0.54 -28.53 9.39 25.60 0.24 -28.29 16 13 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 14 C 0.02 0.86 5.46 84.66 0.46 1.32 16 15 N -0.92 -51.95 13.29 21.45 0.28 -51.67 16 16 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 C 0.09 2.36 4.93 86.38 0.43 2.79 16 21 C -0.05 -0.92 4.99 28.79 0.14 -0.78 16 22 C 0.24 5.06 14.39 89.43 1.29 6.35 16 23 N -0.47 -12.27 18.54 20.01 0.37 -11.90 16 24 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.10 2.97 6.28 -2.39 -0.01 2.96 16 29 H 0.22 3.16 8.06 -2.91 -0.02 3.14 16 30 H 0.19 3.82 2.59 -2.91 -0.01 3.82 16 31 H 0.04 1.99 8.07 -2.39 -0.02 1.98 16 32 H 0.01 0.69 7.40 -2.38 -0.02 0.68 16 33 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.10 2.63 8.01 -2.39 -0.02 2.61 16 35 H 0.11 2.53 4.82 -2.39 -0.01 2.52 16 36 H 0.13 2.25 6.33 -2.39 -0.02 2.23 16 37 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.47 317.97 6.29 -62.18 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.10 Total: 11.15 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 6.42 Total: 12.35 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -3.20 Total: -104.18 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.06 Total: -26.17 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -68.47 6.29 -62.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613950592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.425 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds