Wall clock time and date at job start Thu Apr 9 2020 13:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46646 * 2 1 4 4 C 1.50696 * 109.46984 * 119.99529 * 2 1 3 5 5 N 1.28008 * 120.00294 * 239.99975 * 4 2 1 6 6 N 1.40095 * 120.00178 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00177 * 180.02562 * 6 5 4 8 8 O 1.21955 * 120.00384 * 180.02562 * 7 6 5 9 9 N 1.33226 * 120.00094 * 359.97438 * 7 6 5 10 10 C 1.34313 * 120.00362 * 244.80891 * 9 7 6 11 11 C 1.41350 * 120.67544 * 175.13555 * 10 9 7 12 12 C 1.35232 * 119.26059 * 180.02562 * 11 10 9 13 13 N 1.35547 * 120.68631 * 0.02562 * 12 11 10 14 14 H 0.97006 * 119.27378 * 179.97438 * 13 12 11 15 15 C 1.35547 * 121.45670 * 359.97438 * 13 12 11 16 16 C 1.35234 * 120.68378 * 0.02562 * 15 13 12 17 17 C 1.52999 * 109.47145 * 240.00169 * 2 1 3 18 18 C 1.50697 * 109.47356 * 64.99799 * 17 2 1 19 19 H 1.08000 * 119.99841 * 0.02562 * 18 17 2 20 20 C 1.37877 * 120.00192 * 179.97438 * 18 17 2 21 21 N 1.31508 * 119.99685 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46815 * 90.00563 * 22 20 18 24 24 H 1.48500 * 109.47168 * 210.00186 * 22 20 18 25 25 H 1.48494 * 109.47262 * 330.00673 * 22 20 18 26 26 H 1.09001 * 109.47104 * 60.00164 * 1 2 3 27 27 H 1.09000 * 109.46646 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47231 * 300.00150 * 1 2 3 29 29 H 1.07999 * 119.99827 * 60.01005 * 4 2 1 30 30 H 0.97004 * 120.00336 * 359.97438 * 6 5 4 31 31 H 1.08001 * 120.37093 * 0.02562 * 11 10 9 32 32 H 1.08002 * 119.65459 * 179.72600 * 12 11 10 33 33 H 1.07997 * 119.65875 * 179.97438 * 15 13 12 34 34 H 1.08000 * 120.36522 * 180.02562 * 16 15 13 35 35 H 1.08996 * 109.46755 * 184.99731 * 17 2 1 36 36 H 1.08995 * 109.47089 * 304.99318 * 17 2 1 37 37 H 0.97002 * 120.00107 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7683 -0.0882 2.0731 6 7 3.2357 -0.7487 3.2168 7 6 4.0101 -0.0936 4.1042 8 8 4.4173 -0.6686 5.0995 9 7 4.3316 1.1821 3.8936 10 6 5.6128 1.5258 3.6829 11 6 5.9579 2.8573 3.3571 12 6 7.2568 3.1717 3.1504 13 7 8.2222 2.2257 3.2523 14 1 9.1475 2.4738 3.0995 15 6 7.9234 0.9406 3.5632 16 6 6.6432 0.5633 3.7815 17 6 2.0401 -0.7212 -1.2493 18 6 1.6414 0.0570 -2.4766 19 1 1.0807 0.9746 -2.3757 20 6 1.9933 -0.4017 -3.7283 21 7 2.6765 -1.5186 -3.8511 22 14 1.4985 0.5627 -5.2497 23 1 2.5632 1.5430 -5.5823 24 1 1.3122 -0.3714 -6.3890 25 1 0.2268 1.2831 -4.9872 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7715 -1.7443 1.4014 30 1 3.0013 -1.6774 3.3704 31 1 5.1928 3.6150 3.2741 32 1 7.5273 4.1860 2.8967 33 1 8.7156 0.2104 3.6365 34 1 6.4110 -0.4619 4.0293 35 1 3.1263 -0.7993 -1.2056 36 1 1.6056 -1.7197 -1.2951 37 1 2.9238 -1.8416 -4.7317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815001739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:48:13 Heat of formation + Delta-G solvation = 59.687355 kcal Electronic energy + Delta-G solvation = -20105.890048 eV Core-core repulsion = 16885.038263 eV Total energy + Delta-G solvation = -3220.851785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.84699 -39.28604 -36.97053 -35.00403 -34.64339 -32.34341 -31.89130 -30.89044 -29.89294 -26.92162 -24.44813 -24.02504 -23.53807 -21.85977 -20.17205 -19.34915 -19.01002 -17.59191 -17.12951 -16.59113 -16.06789 -15.55167 -15.27994 -14.69818 -14.50939 -14.44708 -13.82370 -13.29320 -13.14566 -12.97477 -12.65660 -12.03990 -11.92027 -11.51567 -11.37532 -11.10935 -10.91210 -10.73401 -10.56229 -10.38791 -9.96301 -9.91460 -9.58960 -9.44999 -9.06023 -9.01175 -8.35480 -8.27142 -7.53495 -5.99926 -4.01509 0.86800 1.16810 2.40989 2.63240 3.05510 3.21353 3.32910 3.39363 3.42830 3.74894 4.29674 4.39788 4.47036 4.83653 4.99714 5.06580 5.36400 5.37655 5.41069 5.61071 5.94352 6.01667 6.06680 6.19336 6.30780 6.48121 6.56293 6.57805 6.80127 6.89834 7.02871 7.03967 7.33821 7.65445 7.76448 7.98934 8.03962 8.26042 8.40521 9.03800 9.06874 9.61981 11.11595 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.003835 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.157819 B = 7299.186002 C = 8290.493602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.038 4.038 3 H 0.079 0.921 4 C 0.099 3.901 5 N -0.249 5.249 6 N -0.584 5.584 7 C 0.705 3.295 8 O -0.600 6.600 9 N -0.603 5.603 10 C 0.316 3.684 11 C -0.189 4.189 12 C 0.121 3.879 13 N -0.592 5.592 14 H 0.419 0.581 15 C 0.133 3.867 16 C -0.251 4.251 17 C 0.033 3.967 18 C -0.514 4.514 19 H 0.060 0.940 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.273 1.273 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.098 0.902 30 H 0.382 0.618 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.146 0.854 35 H 0.017 0.983 36 H 0.020 0.980 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.646 7.711 12.472 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.060 4.060 3 H 0.097 0.903 4 C -0.116 4.116 5 N -0.054 5.054 6 N -0.328 5.328 7 C 0.407 3.593 8 O -0.478 6.478 9 N -0.339 5.339 10 C 0.154 3.846 11 C -0.215 4.215 12 C -0.008 4.008 13 N -0.197 5.197 14 H 0.255 0.745 15 C 0.003 3.997 16 C -0.279 4.279 17 C -0.005 4.005 18 C -0.552 4.552 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.116 0.884 30 H 0.222 0.778 31 H 0.172 0.828 32 H 0.188 0.812 33 H 0.183 0.817 34 H 0.164 0.836 35 H 0.036 0.964 36 H 0.039 0.961 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.527 8.473 13.370 20.186 hybrid contribution 0.026 -1.450 -0.925 1.720 sum 12.553 7.023 12.446 19.021 Atomic orbital electron populations 1.21669 0.94492 1.01370 1.01066 1.20330 0.95389 0.99980 0.90259 0.90297 1.26663 0.92563 0.97763 0.94584 1.74425 1.11795 1.24369 0.94805 1.46911 1.52897 1.12764 1.20226 1.16956 0.77615 0.83088 0.81647 1.90987 1.57996 1.69489 1.29341 1.68422 1.16679 1.15715 1.33063 1.18683 0.87719 0.92459 0.85770 1.20675 0.95258 0.96663 1.08893 1.21796 0.88713 0.94056 0.96274 1.41066 1.10981 1.07503 1.60129 0.74521 1.21728 0.98439 0.85383 0.94164 1.21879 0.92333 1.02652 1.11033 1.19117 0.96409 0.95573 0.89380 1.21186 1.34943 1.08401 0.90665 0.92218 1.25002 0.95238 0.95059 0.99109 1.69965 1.38950 1.21185 1.23474 0.86599 0.78986 0.79759 0.82698 1.20744 1.21345 1.19766 0.90860 0.93227 0.94549 0.88443 0.77825 0.82817 0.81175 0.81715 0.83614 0.96443 0.96128 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.99 37.16 0.33 -2.00 16 2 C -0.04 -0.79 2.75 -91.77 -0.25 -1.04 16 3 H 0.08 1.70 8.11 -51.93 -0.42 1.28 16 4 C 0.10 1.89 9.66 -13.87 -0.13 1.75 16 5 N -0.25 -5.01 10.88 32.67 0.36 -4.65 16 6 N -0.58 -11.23 6.26 27.39 0.17 -11.06 16 7 C 0.70 14.45 7.03 -88.29 -0.62 13.83 16 8 O -0.60 -13.15 16.64 4.96 0.08 -13.07 16 9 N -0.60 -11.73 10.00 -14.59 -0.15 -11.87 16 10 C 0.32 4.82 6.60 -84.41 -0.56 4.26 16 11 C -0.19 -2.03 10.00 -39.47 -0.39 -2.42 16 12 C 0.12 0.70 11.17 -16.98 -0.19 0.51 16 13 N -0.59 -2.62 5.24 -13.04 -0.07 -2.69 16 14 H 0.42 0.09 8.90 -40.82 -0.36 -0.28 16 15 C 0.13 0.95 11.17 -16.98 -0.19 0.76 16 16 C -0.25 -3.22 9.05 -39.47 -0.36 -3.58 16 17 C 0.03 0.84 4.43 -27.89 -0.12 0.71 16 18 C -0.51 -13.94 8.41 -34.44 -0.29 -14.23 16 19 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 22 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 1.64 8.00 -52.49 -0.42 1.22 16 30 H 0.38 6.46 8.73 -182.60 -1.59 4.87 16 31 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.17 0.24 8.06 -52.49 -0.42 -0.18 16 33 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.15 2.18 6.35 -52.49 -0.33 1.85 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -38.68 327.02 -7.79 -46.47 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.96 Total: 1.40 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.87 Total: 0.04 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 1.05 Total: -55.92 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -38.68 -7.79 -46.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815001739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.162 kcal (2) G-P(sol) polarization free energy of solvation -38.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds