Wall clock time and date at job start Thu Apr 9 2020 13:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47120 * 2 1 4 4 F 1.39897 * 109.46975 * 59.99584 * 3 2 1 5 5 F 1.39899 * 109.46574 * 299.99673 * 3 2 1 6 6 C 1.50703 * 109.47222 * 179.97438 * 3 2 1 7 7 O 1.21272 * 119.99932 * 340.74432 * 6 3 2 8 8 N 1.34778 * 119.99832 * 160.74682 * 6 3 2 9 9 C 1.47077 * 120.88218 * 5.26430 * 8 6 3 10 10 C 1.53697 * 108.27899 * 128.75776 * 9 8 6 11 11 N 1.46894 * 109.25386 * 54.07831 * 10 9 8 12 12 C 1.46906 * 110.99898 * 172.60845 * 11 10 9 13 13 C 1.50695 * 109.47249 * 294.30954 * 12 11 10 14 14 H 1.08002 * 120.00059 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00116 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99610 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00070 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47215 * 89.99873 * 17 15 13 19 19 H 1.48504 * 109.47056 * 210.00178 * 17 15 13 20 20 H 1.48496 * 109.47248 * 329.99754 * 17 15 13 21 21 C 1.46896 * 111.27550 * 296.75737 * 11 10 9 22 22 C 1.47081 * 120.87970 * 185.54729 * 8 6 3 23 23 H 1.08992 * 109.47589 * 299.99760 * 1 2 3 24 24 H 1.08998 * 109.47289 * 60.00575 * 1 2 3 25 25 H 1.09004 * 109.46603 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47826 * 239.99752 * 2 1 3 27 27 H 1.09007 * 109.47398 * 119.99675 * 2 1 3 28 28 H 1.09003 * 109.63246 * 248.52664 * 9 8 6 29 29 H 1.08999 * 109.62899 * 9.10513 * 9 8 6 30 30 H 1.08998 * 109.64466 * 294.07997 * 10 9 8 31 31 H 1.08998 * 109.42146 * 173.95277 * 10 9 8 32 32 H 1.09005 * 109.46691 * 54.30530 * 12 11 10 33 33 H 1.08997 * 109.47560 * 174.30558 * 12 11 10 34 34 H 0.97006 * 119.99617 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.49483 * 303.14939 * 21 11 10 36 36 H 1.08995 * 109.49839 * 183.06158 * 21 11 10 37 37 H 1.09002 * 109.62679 * 350.89519 * 22 8 6 38 38 H 1.08997 * 109.62628 * 111.47556 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.5735 2.1020 1.1422 5 9 1.5736 2.1019 -1.1423 6 6 3.5470 1.4425 0.0006 7 8 4.1532 0.4511 0.3474 8 7 4.2210 2.5445 -0.3841 9 6 3.5100 3.7931 -0.6981 10 6 4.1634 4.9334 0.0988 11 7 5.6057 4.9538 -0.1789 12 6 6.2411 6.1335 0.4233 13 6 5.7219 7.3801 -0.2455 14 1 4.9931 7.3037 -1.0389 15 6 6.1772 8.6183 0.1555 16 7 7.0642 8.7113 1.1219 17 14 5.5341 10.1635 -0.6741 18 1 4.3302 10.6482 0.0475 19 1 6.5839 11.2135 -0.6466 20 1 5.1772 9.8572 -2.0826 21 6 6.2538 3.7168 0.2767 22 6 5.6866 2.5284 -0.5071 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 3.5851 3.9987 -1.7659 29 1 2.4620 3.6993 -0.4133 30 1 4.0005 4.7756 1.1649 31 1 3.7218 5.8839 -0.2002 32 1 6.0079 6.1682 1.4876 33 1 7.3212 6.0725 0.2898 34 1 7.3843 9.5824 1.4043 35 1 6.0618 3.5759 1.3403 36 1 7.3282 3.7850 0.1065 37 1 6.0783 1.5980 -0.0960 38 1 5.9668 2.6148 -1.5569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827479378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:48:17 Heat of formation + Delta-G solvation = -123.779914 kcal Electronic energy + Delta-G solvation = -22572.927608 eV Core-core repulsion = 18893.430898 eV Total energy + Delta-G solvation = -3679.496709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.46090 -47.33753 -40.03012 -37.79099 -34.65808 -33.83775 -32.48881 -30.99348 -28.80681 -27.50340 -25.46356 -23.55456 -22.79269 -21.76932 -20.80969 -19.46138 -18.01905 -17.73860 -17.17905 -16.41330 -15.98448 -15.09892 -14.82015 -14.74470 -14.68017 -14.44579 -14.07080 -13.74390 -13.67824 -13.59423 -13.40953 -13.22476 -12.93286 -12.27576 -12.21798 -11.96727 -11.65774 -11.50128 -11.34845 -11.16661 -10.99290 -10.81004 -10.66154 -10.59838 -9.99034 -9.83202 -9.32207 -8.71839 -8.49424 -7.39819 -6.08695 -4.10952 2.05490 2.50458 3.28444 3.35114 3.38796 3.49975 3.68765 4.09924 4.31812 4.36805 4.72557 4.88367 4.97189 5.15283 5.22223 5.25833 5.31041 5.40306 5.52537 5.57144 5.63574 5.67953 5.74122 5.85306 5.87728 6.19213 6.34446 6.38805 6.49648 7.12769 7.18260 7.24844 7.69103 7.70663 7.95833 8.06986 8.42868 8.96043 9.53813 11.02123 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.030358 B = 0.004350 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.111515 B = 6435.520657 C = 6985.241159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.149 4.149 3 C 0.283 3.717 4 F -0.181 7.181 5 F -0.184 7.184 6 C 0.483 3.517 7 O -0.518 6.518 8 N -0.586 5.586 9 C 0.098 3.902 10 C 0.050 3.950 11 N -0.536 5.536 12 C 0.193 3.807 13 C -0.511 4.511 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.040 3.960 22 C 0.115 3.885 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.027 0.973 31 H 0.101 0.899 32 H -0.008 1.008 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.029 0.971 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.557 -15.505 -3.014 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.187 4.187 3 C 0.244 3.756 4 F -0.162 7.162 5 F -0.164 7.164 6 C 0.266 3.734 7 O -0.394 6.394 8 N -0.317 5.317 9 C -0.024 4.024 10 C -0.079 4.079 11 N -0.261 5.261 12 C 0.069 3.931 13 C -0.550 4.550 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.089 4.089 22 C -0.007 4.007 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.119 0.881 32 H 0.010 0.990 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.058 -15.803 -3.237 19.010 hybrid contribution -0.416 1.195 0.541 1.377 sum -10.474 -14.608 -2.696 18.176 Atomic orbital electron populations 1.21789 0.93216 1.03206 1.03255 1.22372 0.98282 0.91238 1.06804 1.21402 0.90587 0.91016 0.72643 1.93077 1.89689 1.82897 1.50532 1.93024 1.90018 1.82628 1.50777 1.20728 0.88833 0.84270 0.79574 1.90729 1.68253 1.33153 1.47281 1.48331 1.08649 1.10977 1.63790 1.22489 0.95913 0.82429 1.01564 1.22431 0.90468 0.98271 0.96711 1.62105 1.01713 1.02495 1.59772 1.19739 0.94850 0.85836 0.92702 1.21129 1.24759 0.89981 1.19094 0.91758 1.24993 0.95112 0.99265 0.95159 1.69958 1.30551 1.24599 1.28552 0.86486 0.78448 0.82520 0.79915 1.20698 1.21236 1.19706 1.22407 0.99595 0.90504 0.96390 1.21941 0.77445 0.99628 1.01658 0.91614 0.91636 0.91010 0.88371 0.87725 0.89721 0.89500 0.95432 0.88067 0.99008 0.94913 0.92834 0.95325 0.89648 0.89061 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.67 37.15 0.36 -0.88 16 2 C -0.15 -1.45 4.98 -26.73 -0.13 -1.59 16 3 C 0.28 3.57 1.30 -27.88 -0.04 3.53 16 4 F -0.18 -2.46 16.03 2.25 0.04 -2.42 16 5 F -0.18 -2.27 13.90 2.25 0.03 -2.24 16 6 C 0.48 7.23 7.16 -10.98 -0.08 7.16 16 7 O -0.52 -8.58 15.48 5.56 0.09 -8.49 16 8 N -0.59 -9.02 3.00 -172.18 -0.52 -9.54 16 9 C 0.10 1.50 5.76 -3.37 -0.02 1.48 16 10 C 0.05 0.94 5.47 -3.47 -0.02 0.92 16 11 N -0.54 -11.06 4.62 -235.47 -1.09 -12.15 16 12 C 0.19 4.89 4.72 -4.98 -0.02 4.86 16 13 C -0.51 -13.86 8.41 -34.44 -0.29 -14.15 16 14 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 17 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 22 C 0.11 1.74 6.61 -3.60 -0.02 1.71 16 23 H 0.06 0.54 7.80 -51.93 -0.41 0.13 16 24 H 0.06 0.51 7.80 -51.93 -0.41 0.11 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.10 1.02 7.90 -51.93 -0.41 0.61 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.09 1.22 5.01 -51.93 -0.26 0.96 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.99 6.67 -51.93 -0.35 1.64 16 32 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 33 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.43 7.99 -51.93 -0.41 1.02 16 37 H 0.09 1.32 7.04 -51.93 -0.37 0.95 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -29.99 312.95 -6.89 -36.88 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.49 Total: -2.58 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -0.38 Total: 5.20 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.87 Total: -47.15 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.67 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.99 -6.89 -36.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827479378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.901 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds