Wall clock time and date at job start Thu Apr 9 2020 13:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47120 * 2 1 4 4 F 1.39897 * 109.46975 * 59.99584 * 3 2 1 5 5 F 1.39899 * 109.46574 * 299.99673 * 3 2 1 6 6 C 1.50703 * 109.47222 * 179.97438 * 3 2 1 7 7 O 1.21272 * 119.99932 * 340.74432 * 6 3 2 8 8 N 1.34778 * 119.99832 * 160.74682 * 6 3 2 9 9 C 1.47077 * 120.88218 * 5.26430 * 8 6 3 10 10 C 1.53697 * 108.27899 * 128.75776 * 9 8 6 11 11 N 1.46894 * 109.25386 * 54.07831 * 10 9 8 12 12 C 1.46906 * 110.99898 * 172.60845 * 11 10 9 13 13 C 1.50695 * 109.47249 * 294.30954 * 12 11 10 14 14 H 1.08002 * 120.00059 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00116 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99610 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00070 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47215 * 89.99873 * 17 15 13 19 19 H 1.48504 * 109.47056 * 210.00178 * 17 15 13 20 20 H 1.48496 * 109.47248 * 329.99754 * 17 15 13 21 21 C 1.46896 * 111.27550 * 296.75737 * 11 10 9 22 22 C 1.47081 * 120.87970 * 185.54729 * 8 6 3 23 23 H 1.08992 * 109.47589 * 299.99760 * 1 2 3 24 24 H 1.08998 * 109.47289 * 60.00575 * 1 2 3 25 25 H 1.09004 * 109.46603 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47826 * 239.99752 * 2 1 3 27 27 H 1.09007 * 109.47398 * 119.99675 * 2 1 3 28 28 H 1.09003 * 109.63246 * 248.52664 * 9 8 6 29 29 H 1.08999 * 109.62899 * 9.10513 * 9 8 6 30 30 H 1.08998 * 109.64466 * 294.07997 * 10 9 8 31 31 H 1.08998 * 109.42146 * 173.95277 * 10 9 8 32 32 H 1.09005 * 109.46691 * 54.30530 * 12 11 10 33 33 H 1.08997 * 109.47560 * 174.30558 * 12 11 10 34 34 H 0.97006 * 119.99617 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.49483 * 303.14939 * 21 11 10 36 36 H 1.08995 * 109.49839 * 183.06158 * 21 11 10 37 37 H 1.09002 * 109.62679 * 350.89519 * 22 8 6 38 38 H 1.08997 * 109.62628 * 111.47556 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.5735 2.1020 1.1422 5 9 1.5736 2.1019 -1.1423 6 6 3.5470 1.4425 0.0006 7 8 4.1532 0.4511 0.3474 8 7 4.2210 2.5445 -0.3841 9 6 3.5100 3.7931 -0.6981 10 6 4.1634 4.9334 0.0988 11 7 5.6057 4.9538 -0.1789 12 6 6.2411 6.1335 0.4233 13 6 5.7219 7.3801 -0.2455 14 1 4.9931 7.3037 -1.0389 15 6 6.1772 8.6183 0.1555 16 7 7.0642 8.7113 1.1219 17 14 5.5341 10.1635 -0.6741 18 1 4.3302 10.6482 0.0475 19 1 6.5839 11.2135 -0.6466 20 1 5.1772 9.8572 -2.0826 21 6 6.2538 3.7168 0.2767 22 6 5.6866 2.5284 -0.5071 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 3.5851 3.9987 -1.7659 29 1 2.4620 3.6993 -0.4133 30 1 4.0005 4.7756 1.1649 31 1 3.7218 5.8839 -0.2002 32 1 6.0079 6.1682 1.4876 33 1 7.3212 6.0725 0.2898 34 1 7.3843 9.5824 1.4043 35 1 6.0618 3.5759 1.3403 36 1 7.3282 3.7850 0.1065 37 1 6.0783 1.5980 -0.0960 38 1 5.9668 2.6148 -1.5569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827479378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:48:15 Heat of formation + Delta-G solvation = -143.172173 kcal Electronic energy + Delta-G solvation = -22573.768519 eV Core-core repulsion = 18893.430898 eV Total energy + Delta-G solvation = -3680.337621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -50.47597 -48.35689 -41.29640 -39.23814 -36.20447 -34.64868 -34.45978 -32.37558 -30.34520 -28.80585 -27.05597 -24.92525 -24.20455 -23.16075 -22.08445 -20.75035 -19.07599 -18.91096 -18.51849 -18.22794 -17.16999 -16.68491 -16.27524 -16.09365 -15.90160 -15.70170 -15.43242 -15.40043 -14.68287 -14.64308 -14.53544 -14.34217 -14.15991 -13.89397 -13.54709 -13.15113 -13.00408 -12.78473 -12.64369 -12.48965 -12.41636 -12.37233 -12.20868 -12.15579 -11.82388 -11.31142 -11.05958 -10.62845 -10.03920 -9.14257 -8.21150 -6.31531 0.86889 1.36545 1.43532 1.44494 1.56089 2.38498 2.41586 2.74437 3.09631 3.13438 3.17050 3.40141 3.78685 3.91581 4.09949 4.14493 4.18810 4.22615 4.33090 4.41306 4.57513 4.61694 4.75700 4.86155 4.91646 4.92507 4.97149 5.06911 5.15909 5.25459 5.26553 5.62225 5.91452 6.00552 6.20857 6.48706 6.51005 6.83847 7.38598 8.90238 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.030358 B = 0.004350 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.111515 B = 6435.520657 C = 6985.241159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.146 4.146 3 C 0.284 3.716 4 F -0.188 7.188 5 F -0.181 7.181 6 C 0.481 3.519 7 O -0.533 6.533 8 N -0.593 5.593 9 C 0.112 3.888 10 C 0.051 3.949 11 N -0.537 5.537 12 C 0.208 3.792 13 C -0.523 4.523 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.261 1.261 21 C 0.041 3.959 22 C 0.123 3.877 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.014 0.986 31 H 0.090 0.910 32 H -0.041 1.041 33 H 0.009 0.991 34 H 0.264 0.736 35 H 0.016 0.984 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 -16.225 -4.450 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.184 4.184 3 C 0.245 3.755 4 F -0.169 7.169 5 F -0.161 7.161 6 C 0.265 3.735 7 O -0.411 6.411 8 N -0.325 5.325 9 C -0.010 4.010 10 C -0.078 4.078 11 N -0.262 5.262 12 C 0.082 3.918 13 C -0.561 4.561 14 H 0.088 0.912 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.795 3.205 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.185 1.185 21 C -0.088 4.088 22 C 0.002 3.998 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.032 0.968 31 H 0.108 0.892 32 H -0.023 1.023 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.637 -16.551 -4.682 20.767 hybrid contribution 0.100 1.367 1.032 1.716 sum -11.537 -15.184 -3.650 19.416 Atomic orbital electron populations 1.21802 0.91642 1.04588 1.03102 1.22450 0.99568 0.89040 1.07318 1.21513 0.88966 0.92602 0.72447 1.93068 1.89564 1.83235 1.51001 1.93028 1.89788 1.82755 1.50572 1.21162 0.89951 0.83727 0.78677 1.90720 1.68992 1.33656 1.47714 1.48423 1.08783 1.11237 1.64053 1.22368 0.96123 0.81010 1.01506 1.22431 0.89349 0.99458 0.96572 1.62033 1.02786 1.02142 1.59190 1.19395 0.93745 0.87776 0.90927 1.21457 1.24726 0.90829 1.19132 0.91242 1.25924 0.95212 1.02803 0.95688 1.70092 1.31934 1.25502 1.30098 0.85364 0.77852 0.78080 0.79230 1.19902 1.21053 1.18533 1.22475 1.00044 0.90193 0.96126 1.21869 0.77511 0.98419 1.02034 0.92053 0.91487 0.88904 0.87316 0.87779 0.88477 0.87977 0.96803 0.89182 1.02309 0.97255 0.92708 0.96609 0.89142 0.88102 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 71.98 0.70 -1.34 16 2 C -0.15 -2.51 4.98 30.59 0.15 -2.36 16 3 C 0.28 6.60 1.30 29.85 0.04 6.64 16 4 F -0.19 -4.82 16.03 44.97 0.72 -4.10 16 5 F -0.18 -4.03 13.90 44.97 0.62 -3.41 16 6 C 0.48 13.58 7.16 87.66 0.63 14.21 16 7 O -0.53 -16.82 15.48 -3.01 -0.05 -16.87 16 8 N -0.59 -17.36 3.00 -817.04 -2.45 -19.81 16 9 C 0.11 3.25 5.76 86.50 0.50 3.75 16 10 C 0.05 1.90 5.47 86.54 0.47 2.37 16 11 N -0.54 -22.37 4.62 -898.89 -4.15 -26.53 16 12 C 0.21 10.85 4.72 85.55 0.40 11.25 16 13 C -0.52 -28.70 8.41 25.60 0.22 -28.48 16 14 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 15 C 0.00 0.10 5.46 84.66 0.46 0.56 16 16 N -0.94 -55.72 13.29 21.45 0.28 -55.43 16 17 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 C 0.04 1.43 5.62 86.39 0.49 1.92 16 22 C 0.12 3.56 6.61 86.35 0.57 4.13 16 23 H 0.06 0.87 7.80 -2.39 -0.02 0.85 16 24 H 0.07 0.88 7.80 -2.39 -0.02 0.86 16 25 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.10 1.83 7.90 -2.38 -0.02 1.81 16 28 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.10 2.67 5.01 -2.39 -0.01 2.66 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 3.54 6.67 -2.39 -0.02 3.53 16 32 H -0.04 -2.36 8.12 -2.38 -0.02 -2.38 16 33 H 0.01 0.53 7.97 -2.39 -0.02 0.51 16 34 H 0.26 14.82 8.31 -92.70 -0.77 14.04 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 3.06 7.99 -2.39 -0.02 3.04 16 37 H 0.10 2.76 7.04 -2.39 -0.02 2.75 16 38 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -64.27 312.95 2.68 -61.58 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.05 Total: 6.70 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 4.62 Total: 12.64 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -6.32 Total: -101.77 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.05 Total: -16.87 kcal Atomic # 9 Polarization: -8.85 SS G_CDS: 1.35 Total: -7.51 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -64.27 2.68 -61.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827479378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.589 kcal (2) G-P(sol) polarization free energy of solvation -64.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds