Wall clock time and date at job start Thu Apr 9 2020 13:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47195 * 2 1 4 4 C 1.50699 * 109.47177 * 120.00227 * 2 1 3 5 5 H 1.08001 * 119.99910 * 120.00072 * 4 2 1 6 6 C 1.37873 * 120.00128 * 300.00002 * 4 2 1 7 7 N 1.31516 * 119.99945 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00108 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47184 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47482 * 119.99687 * 8 6 4 11 11 H 1.48506 * 109.47236 * 239.99935 * 8 6 4 12 12 N 1.46506 * 109.47056 * 240.00433 * 2 1 3 13 13 N 1.40100 * 119.99888 * 89.99802 * 12 2 1 14 14 C 1.29741 * 119.99545 * 174.68684 * 13 12 2 15 15 C 1.51482 * 121.19645 * 354.01624 * 14 13 12 16 16 C 1.53442 * 107.35378 * 222.42666 * 15 14 13 17 17 C 1.52624 * 109.37451 * 295.97905 * 16 15 14 18 18 C 1.50413 * 111.23720 * 54.69963 * 17 16 15 19 19 C 1.38674 * 119.05834 * 157.56113 * 18 17 16 20 20 F 1.35102 * 119.86245 * 359.69789 * 19 18 17 21 21 C 1.38432 * 120.28438 * 179.77072 * 19 18 17 22 22 C 1.38357 * 120.42275 * 359.88394 * 21 19 18 23 23 C 1.37952 * 119.96780 * 0.12522 * 22 21 19 24 24 C 1.39304 * 121.69539 * 337.33767 * 18 17 16 25 25 H 1.09005 * 109.47025 * 299.99727 * 1 2 3 26 26 H 1.09002 * 109.47284 * 59.99624 * 1 2 3 27 27 H 1.08996 * 109.47479 * 179.97438 * 1 2 3 28 28 H 0.96999 * 119.99933 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99836 * 269.99741 * 12 2 1 30 30 H 1.08999 * 109.88010 * 102.96213 * 15 14 13 31 31 H 1.08999 * 109.87565 * 341.88781 * 15 14 13 32 32 H 1.08996 * 109.48997 * 176.00387 * 16 15 14 33 33 H 1.09000 * 109.50204 * 55.95309 * 16 15 14 34 34 H 1.09001 * 109.11747 * 175.13566 * 17 16 15 35 35 H 1.09001 * 109.11534 * 294.26862 * 17 16 15 36 36 H 1.07990 * 119.78627 * 179.90961 * 21 19 18 37 37 H 1.08005 * 120.01354 * 180.11161 * 22 21 19 38 38 H 1.08002 * 120.07317 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.1474 -2.2865 3.6036 10 1 3.1473 -0.1860 4.8160 11 1 1.1678 -1.5868 4.8164 12 7 2.0183 -0.6905 -1.1963 13 7 2.2518 0.0301 -2.3748 14 6 2.7809 -0.5601 -3.4019 15 6 3.2796 -1.9879 -3.3157 16 6 4.6220 -2.0493 -4.0564 17 6 4.3999 -1.7377 -5.5338 18 6 3.6943 -0.4214 -5.7129 19 6 3.8161 0.2492 -6.9206 20 9 4.5660 -0.2806 -7.9116 21 6 3.1737 1.4600 -7.1146 22 6 2.4020 2.0129 -6.1081 23 6 2.2715 1.3578 -4.9011 24 6 2.9192 0.1374 -4.6992 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7089 1.1612 3.4844 29 1 2.1800 -1.6467 -1.1723 30 1 2.5638 -2.6597 -3.7894 31 1 3.4189 -2.2694 -2.2719 32 1 5.0478 -3.0476 -3.9553 33 1 5.3071 -1.3169 -3.6293 34 1 5.3648 -1.6971 -6.0391 35 1 3.7970 -2.5292 -5.9789 36 1 3.2752 1.9761 -8.0577 37 1 1.9023 2.9571 -6.2672 38 1 1.6699 1.7880 -4.1140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872357561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:48:25 Heat of formation + Delta-G solvation = 4.928170 kcal Electronic energy + Delta-G solvation = -20710.106789 eV Core-core repulsion = 17466.960506 eV Total energy + Delta-G solvation = -3243.146283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.86518 -39.64129 -36.92881 -35.35537 -33.87773 -31.72694 -30.42438 -30.01062 -27.85084 -26.24714 -25.22210 -23.05483 -22.92601 -21.05682 -20.34251 -18.84812 -17.69482 -16.44592 -16.28225 -15.85028 -15.61364 -15.20829 -15.17643 -14.65414 -13.94242 -13.76333 -13.41090 -13.15300 -13.00154 -12.67133 -12.59038 -12.20288 -12.04128 -11.79424 -11.37578 -11.16390 -11.08578 -10.97202 -10.83843 -10.61690 -10.41198 -10.27048 -10.23102 -9.41800 -9.07957 -8.85143 -8.55032 -8.52985 -6.83830 -6.18400 -4.27166 1.03064 1.26044 2.83894 3.20208 3.28036 3.30802 3.66998 3.84804 4.28293 4.36190 4.61934 4.72184 4.92539 5.03064 5.08921 5.14285 5.28262 5.31109 5.40330 5.66149 5.74946 5.80869 5.84476 5.96477 6.09844 6.17825 6.25232 6.30113 6.38075 6.63797 6.71512 6.95512 6.97009 7.00353 7.10239 7.52597 7.71866 7.80710 8.08372 8.23611 8.79954 9.23066 9.40011 10.87290 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.030649 B = 0.003844 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.365341 B = 7281.738375 C = 7938.021139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.295 3.705 3 H 0.042 0.958 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.616 5.616 13 N -0.182 5.182 14 C 0.009 3.991 15 C -0.099 4.099 16 C -0.107 4.107 17 C -0.075 4.075 18 C -0.110 4.110 19 C 0.092 3.908 20 F -0.143 7.143 21 C -0.163 4.163 22 C -0.095 4.095 23 C -0.108 4.108 24 C 0.034 3.966 25 H 0.090 0.910 26 H 0.013 0.987 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.371 0.629 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -2.202 -16.284 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.193 3.807 3 H 0.060 0.940 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.353 5.353 13 N 0.004 4.996 14 C -0.179 4.179 15 C -0.139 4.139 16 C -0.146 4.146 17 C -0.112 4.112 18 C -0.113 4.113 19 C 0.073 3.927 20 F -0.122 7.122 21 C -0.183 4.183 22 C -0.113 4.113 23 C -0.128 4.128 24 C 0.031 3.969 25 H 0.109 0.891 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.209 0.791 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.763 -1.139 -15.589 16.077 hybrid contribution 0.727 -1.588 0.549 1.831 sum 4.490 -2.728 -15.040 15.931 Atomic orbital electron populations 1.22184 0.98769 0.99257 1.00599 1.18590 0.90326 0.93559 0.78237 0.94031 1.21263 1.32313 1.13315 0.90206 0.92179 1.24852 0.94776 0.94969 0.98967 1.69896 1.35996 1.22487 1.23873 0.86375 0.78642 0.79548 0.82445 1.19764 1.20801 1.20800 1.49130 1.70923 1.07881 1.07390 1.74046 1.05831 1.25999 0.93690 1.22413 1.07628 0.94977 0.92832 1.21008 0.97185 0.94561 1.01169 1.21396 0.97210 1.01854 0.94106 1.20253 0.99910 0.93411 0.97666 1.19773 1.00895 0.98158 0.92478 1.17460 0.95597 0.94036 0.85577 1.91451 1.74321 1.86311 1.60103 1.21032 1.00684 0.95463 1.01088 1.20928 0.97943 0.99823 0.92645 1.21453 0.99674 0.94186 0.97527 1.17866 0.94919 0.93384 0.90721 0.89136 0.96751 0.95496 0.92568 0.79103 0.90816 0.90781 0.91185 0.91389 0.90618 0.90451 0.85243 0.85092 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.29 37.16 0.35 -3.24 16 2 C 0.29 7.36 3.23 -69.08 -0.22 7.13 16 3 H 0.04 1.16 8.14 -51.93 -0.42 0.73 16 4 C -0.53 -14.02 8.74 -34.44 -0.30 -14.32 16 5 H 0.06 1.55 7.79 -52.49 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.28 11.32 55.43 0.63 -23.65 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.62 -13.29 5.92 -5.88 -0.03 -13.33 16 13 N -0.18 -3.65 10.76 35.41 0.38 -3.27 16 14 C 0.01 0.15 6.74 -79.12 -0.53 -0.38 16 15 C -0.10 -1.41 5.63 -27.27 -0.15 -1.57 16 16 C -0.11 -1.29 5.89 -26.70 -0.16 -1.45 16 17 C -0.08 -0.88 5.44 -28.22 -0.15 -1.03 16 18 C -0.11 -1.49 5.78 -104.20 -0.60 -2.09 16 19 C 0.09 1.19 7.23 -39.35 -0.28 0.91 16 20 F -0.14 -1.82 16.49 2.25 0.04 -1.78 16 21 C -0.16 -1.87 10.00 -39.47 -0.39 -2.27 16 22 C -0.10 -1.11 10.04 -39.64 -0.40 -1.51 16 23 C -0.11 -1.54 9.58 -39.17 -0.38 -1.92 16 24 C 0.03 0.51 5.81 -105.01 -0.61 -0.10 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.37 7.46 6.50 -182.60 -1.19 6.27 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.11 6.27 -51.93 -0.33 0.79 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.81 7.76 -51.93 -0.40 0.40 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.14 2.06 7.63 -52.49 -0.40 1.66 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -27.61 317.48 -9.14 -36.75 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.98 Total: 5.18 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.94 Total: -20.14 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.97 Total: -40.25 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.61 -9.14 -36.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872357561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.683 kcal (2) G-P(sol) polarization free energy of solvation -27.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds