Wall clock time and date at job start Thu Apr 9 2020 13:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47195 * 2 1 4 4 C 1.50699 * 109.47177 * 120.00227 * 2 1 3 5 5 H 1.08001 * 119.99910 * 120.00072 * 4 2 1 6 6 C 1.37873 * 120.00128 * 300.00002 * 4 2 1 7 7 N 1.31516 * 119.99945 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00108 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47184 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47482 * 119.99687 * 8 6 4 11 11 H 1.48506 * 109.47236 * 239.99935 * 8 6 4 12 12 N 1.46506 * 109.47056 * 240.00433 * 2 1 3 13 13 N 1.40100 * 119.99888 * 89.99802 * 12 2 1 14 14 C 1.29741 * 119.99545 * 174.68684 * 13 12 2 15 15 C 1.51482 * 121.19645 * 354.01624 * 14 13 12 16 16 C 1.53442 * 107.35378 * 222.42666 * 15 14 13 17 17 C 1.52624 * 109.37451 * 295.97905 * 16 15 14 18 18 C 1.50413 * 111.23720 * 54.69963 * 17 16 15 19 19 C 1.38674 * 119.05834 * 157.56113 * 18 17 16 20 20 F 1.35102 * 119.86245 * 359.69789 * 19 18 17 21 21 C 1.38432 * 120.28438 * 179.77072 * 19 18 17 22 22 C 1.38357 * 120.42275 * 359.88394 * 21 19 18 23 23 C 1.37952 * 119.96780 * 0.12522 * 22 21 19 24 24 C 1.39304 * 121.69539 * 337.33767 * 18 17 16 25 25 H 1.09005 * 109.47025 * 299.99727 * 1 2 3 26 26 H 1.09002 * 109.47284 * 59.99624 * 1 2 3 27 27 H 1.08996 * 109.47479 * 179.97438 * 1 2 3 28 28 H 0.96999 * 119.99933 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99836 * 269.99741 * 12 2 1 30 30 H 1.08999 * 109.88010 * 102.96213 * 15 14 13 31 31 H 1.08999 * 109.87565 * 341.88781 * 15 14 13 32 32 H 1.08996 * 109.48997 * 176.00387 * 16 15 14 33 33 H 1.09000 * 109.50204 * 55.95309 * 16 15 14 34 34 H 1.09001 * 109.11747 * 175.13566 * 17 16 15 35 35 H 1.09001 * 109.11534 * 294.26862 * 17 16 15 36 36 H 1.07990 * 119.78627 * 179.90961 * 21 19 18 37 37 H 1.08005 * 120.01354 * 180.11161 * 22 21 19 38 38 H 1.08002 * 120.07317 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.1474 -2.2865 3.6036 10 1 3.1473 -0.1860 4.8160 11 1 1.1678 -1.5868 4.8164 12 7 2.0183 -0.6905 -1.1963 13 7 2.2518 0.0301 -2.3748 14 6 2.7809 -0.5601 -3.4019 15 6 3.2796 -1.9879 -3.3157 16 6 4.6220 -2.0493 -4.0564 17 6 4.3999 -1.7377 -5.5338 18 6 3.6943 -0.4214 -5.7129 19 6 3.8161 0.2492 -6.9206 20 9 4.5660 -0.2806 -7.9116 21 6 3.1737 1.4600 -7.1146 22 6 2.4020 2.0129 -6.1081 23 6 2.2715 1.3578 -4.9011 24 6 2.9192 0.1374 -4.6992 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7089 1.1612 3.4844 29 1 2.1800 -1.6467 -1.1723 30 1 2.5638 -2.6597 -3.7894 31 1 3.4189 -2.2694 -2.2719 32 1 5.0478 -3.0476 -3.9553 33 1 5.3071 -1.3169 -3.6293 34 1 5.3648 -1.6971 -6.0391 35 1 3.7970 -2.5292 -5.9789 36 1 3.2752 1.9761 -8.0577 37 1 1.9023 2.9571 -6.2672 38 1 1.6699 1.7880 -4.1140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872357561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:48:24 Heat of formation + Delta-G solvation = -8.930677 kcal Electronic energy + Delta-G solvation = -20710.707754 eV Core-core repulsion = 17466.960506 eV Total energy + Delta-G solvation = -3243.747248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.85314 -40.74641 -38.30494 -36.73627 -35.45372 -33.39446 -31.52509 -31.32900 -29.20954 -27.68900 -27.18293 -24.19070 -23.98043 -22.50486 -21.82197 -20.10289 -19.09506 -18.00069 -17.42537 -16.97087 -16.84348 -16.66346 -16.43799 -16.01022 -15.29562 -14.91976 -14.73487 -14.49880 -14.31532 -14.08333 -13.83084 -13.67781 -13.15968 -13.12171 -12.94833 -12.83764 -12.68100 -12.31929 -12.23934 -12.12699 -11.98781 -11.82091 -11.67862 -11.10299 -10.66345 -10.59013 -10.01405 -9.55428 -8.40841 -8.17296 -6.35938 -0.07708 0.23374 1.41525 1.42719 1.54291 1.59173 2.13812 2.45424 2.75733 3.10258 3.27991 3.58873 3.67399 3.81329 4.05904 4.07914 4.22084 4.27586 4.39363 4.60708 4.67611 4.73305 4.80609 4.86433 4.96006 5.00988 5.03806 5.12371 5.16351 5.20129 5.28626 5.30723 5.45146 5.55253 5.59290 5.80232 5.88250 5.96658 6.17450 6.39719 6.83144 7.35755 7.74297 8.86324 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.030649 B = 0.003844 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.365341 B = 7281.738375 C = 7938.021139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.306 3.694 3 H 0.000 1.000 4 C -0.547 4.547 5 H 0.060 0.940 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.276 1.276 12 N -0.635 5.635 13 N -0.234 5.234 14 C 0.041 3.959 15 C -0.104 4.104 16 C -0.101 4.101 17 C -0.076 4.076 18 C -0.106 4.106 19 C 0.083 3.917 20 F -0.140 7.140 21 C -0.146 4.146 22 C -0.091 4.091 23 C -0.119 4.119 24 C -0.003 4.003 25 H 0.069 0.931 26 H 0.019 0.981 27 H 0.030 0.970 28 H 0.267 0.733 29 H 0.375 0.625 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 -3.131 -18.430 19.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.202 3.798 3 H 0.018 0.982 4 C -0.587 4.587 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.201 1.201 12 N -0.372 5.372 13 N -0.044 5.044 14 C -0.148 4.148 15 C -0.144 4.144 16 C -0.139 4.139 17 C -0.113 4.113 18 C -0.110 4.110 19 C 0.064 3.936 20 F -0.119 7.119 21 C -0.166 4.166 22 C -0.108 4.108 23 C -0.139 4.139 24 C -0.005 4.005 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.213 0.787 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.179 0.821 37 H 0.179 0.821 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.860 -2.070 -17.755 18.525 hybrid contribution 0.467 -1.241 0.896 1.600 sum 5.327 -3.311 -16.859 17.988 Atomic orbital electron populations 1.21994 0.98600 0.99068 0.99685 1.18145 0.90419 0.91540 0.79658 0.98202 1.21544 1.32481 1.13457 0.91171 0.92154 1.25688 0.94853 0.95612 1.01871 1.70021 1.36860 1.23690 1.24620 0.85339 0.78179 0.78465 0.78602 1.19096 1.20595 1.20149 1.48547 1.73632 1.07670 1.07360 1.74064 1.09626 1.26637 0.94083 1.23134 1.03150 0.96114 0.92452 1.21141 0.98984 0.93044 1.01233 1.21378 0.95380 1.03108 0.94030 1.20344 1.00740 0.92833 0.97339 1.19973 1.00015 0.98786 0.92189 1.17576 0.96015 0.94570 0.85444 1.91465 1.74252 1.86340 1.59802 1.21425 0.98585 0.94613 1.01958 1.21217 0.97626 1.00598 0.91388 1.21519 0.99683 0.94281 0.98419 1.17950 0.97481 0.94518 0.90554 0.91274 0.96232 0.95132 0.92395 0.78656 0.89107 0.91836 0.88437 0.92748 0.89144 0.88773 0.82131 0.82119 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.29 71.98 0.67 -6.09 16 2 C 0.31 16.07 3.23 44.24 0.14 16.22 16 3 H 0.00 0.00 8.14 -2.39 -0.02 -0.01 16 4 C -0.55 -29.76 8.74 25.60 0.22 -29.53 16 5 H 0.06 3.19 7.79 -2.91 -0.02 3.17 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 8 Si 0.97 42.39 29.54 68.60 2.03 44.42 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 N -0.63 -28.66 5.92 -172.51 -1.02 -29.68 16 13 N -0.23 -9.79 10.76 -41.90 -0.45 -10.24 16 14 C 0.04 1.40 6.74 45.69 0.31 1.70 16 15 C -0.10 -2.88 5.63 30.25 0.17 -2.71 16 16 C -0.10 -2.21 5.89 30.62 0.18 -2.03 16 17 C -0.08 -1.54 5.44 29.63 0.16 -1.38 16 18 C -0.11 -2.65 5.78 -19.59 -0.11 -2.77 16 19 C 0.08 1.89 7.23 22.42 0.16 2.05 16 20 F -0.14 -3.07 16.49 44.97 0.74 -2.33 16 21 C -0.15 -2.84 10.00 22.34 0.22 -2.62 16 22 C -0.09 -1.89 10.04 22.23 0.22 -1.66 16 23 C -0.12 -3.32 9.58 22.54 0.22 -3.11 16 24 C 0.00 -0.08 5.81 -20.11 -0.12 -0.20 16 25 H 0.07 3.76 6.07 -2.38 -0.01 3.74 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.37 15.67 6.50 -213.32 -1.39 14.28 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.91 6.27 -2.39 -0.01 1.90 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.61 7.76 -2.39 -0.02 1.59 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.16 2.15 8.06 -2.92 -0.02 2.13 16 37 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.12 3.78 7.63 -2.91 -0.02 3.76 16 Total: -1.00 -61.49 317.48 4.13 -57.37 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -0.31 Total: 22.40 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 2.90 Total: -30.59 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -1.23 Total: -91.27 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.74 Total: -2.33 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -61.49 4.13 -57.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872357561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.435 kcal (2) G-P(sol) polarization free energy of solvation -61.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds