Wall clock time and date at job start Thu Apr 9 2020 13:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38603 * 120.32339 * 2 1 4 4 N 1.31495 * 120.90484 * 180.02562 * 3 2 1 5 5 C 1.32748 * 121.64189 * 359.97438 * 4 3 2 6 6 C 1.48160 * 119.72096 * 180.02562 * 5 4 3 7 7 O 1.21521 * 119.99916 * 173.27649 * 6 5 4 8 8 N 1.34773 * 120.00262 * 353.26752 * 6 5 4 9 9 C 1.46502 * 120.00223 * 3.31235 * 8 6 5 10 10 C 1.50702 * 109.47167 * 82.73437 * 9 8 6 11 11 H 1.08004 * 119.99599 * 0.02562 * 10 9 8 12 12 C 1.37867 * 120.00410 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00497 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99832 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47143 * 89.99750 * 14 12 10 16 16 H 1.48503 * 109.47133 * 209.99762 * 14 12 10 17 17 H 1.48500 * 109.47063 * 329.99680 * 14 12 10 18 18 C 1.46508 * 119.99962 * 183.30844 * 8 6 5 19 19 C 1.53008 * 109.46785 * 124.76513 * 18 8 6 20 20 C 1.52997 * 109.46899 * 244.75951 * 18 8 6 21 21 C 1.39267 * 120.55269 * 359.97438 * 5 4 3 22 22 C 1.38582 * 120.32734 * 179.72623 * 2 1 3 23 23 C 1.50698 * 120.75616 * 359.96898 * 22 2 1 24 24 H 1.08997 * 109.47258 * 90.00751 * 1 2 3 25 25 H 1.08996 * 109.47355 * 329.99827 * 1 2 3 26 26 H 1.09009 * 109.46790 * 210.00061 * 1 2 3 27 27 H 1.07998 * 119.54946 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.47506 * 202.73644 * 9 8 6 29 29 H 1.09004 * 109.46903 * 322.74147 * 9 8 6 30 30 H 0.97001 * 119.99873 * 180.02562 * 13 12 10 31 31 H 1.08990 * 109.47232 * 4.76341 * 18 8 6 32 32 H 1.09000 * 109.47328 * 60.00115 * 19 18 8 33 33 H 1.08994 * 109.46958 * 179.97438 * 19 18 8 34 34 H 1.08998 * 109.46580 * 299.99471 * 19 18 8 35 35 H 1.08997 * 109.47201 * 60.00367 * 20 18 8 36 36 H 1.09004 * 109.46925 * 180.02562 * 20 18 8 37 37 H 1.09000 * 109.47682 * 300.00172 * 20 18 8 38 38 H 1.07997 * 120.46825 * 180.02562 * 21 5 4 39 39 H 1.09002 * 109.46589 * 90.00316 * 23 22 2 40 40 H 1.08999 * 109.47194 * 210.00336 * 23 22 2 41 41 H 1.08995 * 109.47257 * 330.00591 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2097 -0.0005 5 6 4.2295 0.0867 -0.0005 6 6 5.7097 0.1514 -0.0005 7 8 6.3623 -0.8662 0.1227 8 7 6.3323 1.3388 -0.1373 9 6 5.5471 2.5733 -0.2131 10 6 5.1914 3.0287 1.1787 11 1 5.5180 2.4560 2.0342 12 6 4.4492 4.1762 1.3600 13 7 4.1392 4.5739 2.5747 14 14 3.8837 5.1664 -0.1197 15 1 2.5553 4.6749 -0.5658 16 1 3.7812 6.6000 0.2539 17 1 4.8651 5.0114 -1.2233 18 6 7.7945 1.3951 -0.2102 19 6 8.2137 2.1261 -1.4873 20 6 8.3373 2.1449 1.0081 21 6 3.5924 -1.1517 0.0005 22 6 2.2067 -1.1962 0.0057 23 6 1.4781 -2.5152 0.0127 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3634 0.8899 0.5138 26 1 -0.3633 -0.8901 0.5139 27 1 1.6647 2.1305 0.0004 28 1 6.1330 3.3467 -0.7098 29 1 4.6342 2.3890 -0.7795 30 1 3.6166 5.3812 2.7022 31 1 8.1969 0.3823 -0.2225 32 1 7.8113 3.1390 -1.4750 33 1 9.3015 2.1684 -1.5413 34 1 7.8270 1.5919 -2.3552 35 1 8.0387 1.6242 1.9179 36 1 9.4252 2.1871 0.9536 37 1 7.9349 3.1578 1.0204 38 1 4.1696 -2.0644 0.0009 39 1 1.3020 -2.8384 -1.0133 40 1 2.0816 -3.2610 0.5301 41 1 0.5236 -2.4003 0.5263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931326860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:48:10 Heat of formation + Delta-G solvation = 10.418008 kcal Electronic energy + Delta-G solvation = -22335.840261 eV Core-core repulsion = 19216.392341 eV Total energy + Delta-G solvation = -3119.447921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.32491 -38.69233 -35.86740 -34.40713 -32.61683 -32.05722 -31.23709 -28.25714 -27.58163 -26.85057 -26.65755 -22.99353 -22.48508 -22.26079 -20.38718 -18.36702 -16.94549 -16.80038 -16.15471 -15.49761 -14.90402 -14.72709 -14.40300 -14.17129 -13.73491 -13.46338 -13.07527 -12.92324 -12.83063 -12.68030 -12.62155 -12.42415 -12.06854 -11.90981 -11.67979 -11.61461 -11.44532 -11.21682 -10.86896 -10.75009 -10.61428 -10.16457 -10.02959 -9.49742 -9.33801 -9.09722 -8.54790 -8.53140 -8.22082 -7.59684 -5.98394 -3.90298 1.15649 1.65914 3.29328 3.36813 3.37361 3.39420 3.77125 4.39923 4.46815 4.76132 4.91129 4.99576 5.10411 5.17215 5.36282 5.41457 5.49037 5.59853 5.63929 5.65290 5.72186 5.78565 5.80144 5.84677 6.10048 6.12177 6.16834 6.20084 6.30137 6.36881 6.40365 6.56585 6.70499 6.75294 6.96858 7.04552 7.28637 7.57512 7.74878 8.22785 8.40571 8.62407 8.94195 9.06936 9.63973 11.15380 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.008597 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.319399 B = 3256.049853 C = 4731.149160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.128 4.128 3 C 0.094 3.906 4 N -0.390 5.390 5 C 0.082 3.918 6 C 0.570 3.430 7 O -0.571 6.571 8 N -0.565 5.565 9 C 0.195 3.805 10 C -0.488 4.488 11 H 0.069 0.931 12 C 0.075 3.925 13 N -0.904 5.904 14 Si 0.870 3.130 15 H -0.275 1.275 16 H -0.291 1.291 17 H -0.268 1.268 18 C 0.132 3.868 19 C -0.159 4.159 20 C -0.153 4.153 21 C -0.117 4.117 22 C -0.068 4.068 23 C -0.112 4.112 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.153 0.847 28 H 0.023 0.977 29 H 0.074 0.926 30 H 0.260 0.740 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.108 -8.331 -7.761 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.130 4.130 3 C -0.066 4.066 4 N -0.101 5.101 5 C -0.056 4.056 6 C 0.357 3.643 7 O -0.452 6.452 8 N -0.293 5.293 9 C 0.074 3.926 10 C -0.527 4.527 11 H 0.087 0.913 12 C -0.126 4.126 13 N -0.544 5.544 14 Si 0.698 3.302 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.193 1.193 18 C 0.029 3.971 19 C -0.217 4.217 20 C -0.211 4.211 21 C -0.138 4.138 22 C -0.075 4.075 23 C -0.168 4.168 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.171 0.829 28 H 0.040 0.960 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.157 0.843 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.356 -7.883 -7.610 11.459 hybrid contribution -0.893 0.108 -0.456 1.009 sum -4.250 -7.775 -8.066 11.982 Atomic orbital electron populations 1.20773 0.90716 1.03070 1.02251 1.20971 0.97206 0.93916 1.00914 1.22910 0.90434 0.97093 0.96139 1.68567 1.06956 1.27855 1.06698 1.21145 0.94605 0.89374 1.00469 1.17860 0.86013 0.83460 0.76978 1.90659 1.66206 1.34917 1.53440 1.47990 1.06108 1.07631 1.67585 1.20485 0.91846 0.80859 0.99363 1.21147 1.32100 1.08231 0.91181 0.91256 1.24707 0.95640 0.97202 0.95059 1.69910 1.39640 1.24376 1.20497 0.86962 0.79863 0.79330 0.84012 1.20129 1.21781 1.19288 1.20966 0.80610 1.00421 0.95111 1.22140 1.00810 1.01523 0.97218 1.22063 0.98949 1.02500 0.97557 1.21875 0.93936 0.98862 0.99127 1.20003 0.93264 0.95350 0.98932 1.20790 1.00205 0.93400 1.02420 0.91094 0.91135 0.91246 0.82938 0.95968 0.90944 0.92968 0.89372 0.91677 0.92006 0.92937 0.92609 0.93110 0.90652 0.84343 0.90963 0.91263 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.66 36.01 0.35 -0.86 16 2 C -0.13 -1.92 5.91 -104.36 -0.62 -2.54 16 3 C 0.09 1.72 10.86 -17.56 -0.19 1.53 16 4 N -0.39 -8.38 4.99 -9.80 -0.05 -8.43 16 5 C 0.08 1.71 6.62 -83.01 -0.55 1.16 16 6 C 0.57 12.78 7.59 -12.19 -0.09 12.68 16 7 O -0.57 -13.29 15.69 5.35 0.08 -13.20 16 8 N -0.56 -12.37 2.38 -168.45 -0.40 -12.77 16 9 C 0.20 4.56 3.17 -5.19 -0.02 4.55 16 10 C -0.49 -13.16 7.64 -34.44 -0.26 -13.42 16 11 H 0.07 2.14 8.06 -52.48 -0.42 1.71 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -26.90 13.96 55.43 0.77 -26.12 16 14 Si 0.87 20.70 27.47 -169.99 -4.67 16.04 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 18 C 0.13 2.50 3.24 -67.92 -0.22 2.28 16 19 C -0.16 -2.53 9.10 37.16 0.34 -2.19 16 20 C -0.15 -2.84 8.94 37.16 0.33 -2.51 16 21 C -0.12 -2.06 9.34 -39.05 -0.36 -2.42 16 22 C -0.07 -1.00 5.91 -104.35 -0.62 -1.62 16 23 C -0.11 -1.17 9.67 36.00 0.35 -0.82 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 26 H 0.07 0.64 6.05 -51.92 -0.31 0.33 16 27 H 0.15 2.66 8.06 -52.49 -0.42 2.24 16 28 H 0.02 0.52 5.26 -51.93 -0.27 0.25 16 29 H 0.07 1.72 4.66 -52.32 -0.24 1.48 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.09 1.68 6.93 -51.93 -0.36 1.32 16 32 H 0.06 1.09 6.50 -51.93 -0.34 0.75 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.54 7.32 -51.93 -0.38 1.16 16 38 H 0.14 2.29 7.66 -52.49 -0.40 1.88 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.07 0.65 6.07 -51.93 -0.32 0.33 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -31.68 328.26 -6.99 -38.67 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.02 Total: 3.09 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.66 Total: -2.22 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.32 Total: -47.32 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.68 -6.99 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931326860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.084 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds