Wall clock time and date at job start Thu Apr 9 2020 13:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30614 * 1 3 3 Si 1.86803 * 119.99914 * 2 1 4 4 H 1.48501 * 109.46793 * 239.99864 * 3 2 1 5 5 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47130 * 120.00075 * 3 2 1 7 7 C 1.40133 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.46207 * 119.99817 * 359.97438 * 7 2 1 10 10 O 1.22133 * 119.99855 * 0.02562 * 9 7 2 11 11 N 1.34074 * 120.00027 * 180.27803 * 9 7 2 12 12 C 1.33003 * 120.00086 * 179.73205 * 11 9 7 13 13 C 1.41026 * 126.38489 * 0.02562 * 12 11 9 14 14 C 1.35423 * 108.18834 * 180.02562 * 13 12 11 15 15 N 1.36181 * 108.92728 * 359.97438 * 14 13 12 16 16 C 1.46498 * 125.83127 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.46851 * 85.02451 * 16 15 14 18 18 C 1.53007 * 109.46861 * 180.02562 * 17 16 15 19 19 F 1.39898 * 109.46982 * 60.00321 * 18 17 16 20 20 F 1.39903 * 109.47011 * 180.02562 * 18 17 16 21 21 F 1.39896 * 109.46958 * 300.00095 * 18 17 16 22 22 N 1.37526 * 126.38446 * 179.71620 * 12 11 9 23 23 H 0.96998 * 126.34408 * 359.95846 * 22 12 11 24 24 H 0.96999 * 119.99897 * 0.02562 * 1 2 3 25 25 H 1.08001 * 125.90613 * 0.02562 * 13 12 11 26 26 H 1.07993 * 125.53715 * 180.02562 * 14 13 12 27 27 H 1.08998 * 109.47041 * 205.02273 * 16 15 14 28 28 H 1.08997 * 109.46949 * 325.02838 * 16 15 14 29 29 H 1.08998 * 109.47153 * 299.99753 * 17 16 15 30 30 H 1.09002 * 109.47452 * 60.00303 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 3.0939 1.6964 -1.2125 5 1 1.2752 2.7465 -0.0006 6 1 3.0939 1.6965 1.2125 7 6 2.0068 -1.2136 -0.0005 8 1 3.0868 -1.2135 -0.0001 9 6 1.2758 -2.4798 -0.0005 10 8 0.0544 -2.4797 -0.0005 11 7 1.9461 -3.6409 0.0046 12 6 1.2811 -4.7927 0.0100 13 6 -0.1204 -4.9495 0.0105 14 6 -0.3975 -6.2751 0.0173 15 7 0.7731 -6.9710 0.0206 16 6 0.9033 -8.4301 0.0286 17 6 0.8234 -8.9571 -1.4056 18 6 0.9587 -10.4811 -1.3972 19 9 -0.0763 -11.0370 -0.6378 20 9 0.8862 -10.9629 -2.7087 21 9 2.1906 -10.8368 -0.8377 22 7 1.8320 -6.0528 0.0101 23 1 2.7781 -6.2665 0.0057 24 1 -0.4850 0.8400 -0.0004 25 1 -0.8472 -4.1506 0.0062 26 1 -1.3861 -6.7097 0.0190 27 1 1.8633 -8.7068 0.4644 28 1 0.0971 -8.8636 0.6204 29 1 -0.1366 -8.6804 -1.8414 30 1 1.6296 -8.5236 -1.9975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425102674.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:49:39 Heat of formation + Delta-G solvation = -78.090030 kcal Electronic energy + Delta-G solvation = -20648.930893 eV Core-core repulsion = 16646.696136 eV Total energy + Delta-G solvation = -4002.234758 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.55005 -48.03559 -48.03358 -40.62954 -36.92455 -34.98774 -32.72443 -31.79589 -30.76103 -29.33188 -26.50509 -25.12729 -22.84542 -21.60983 -21.17318 -19.49172 -19.00068 -18.78854 -17.96164 -16.96324 -16.05659 -15.55040 -15.05944 -15.02161 -14.74437 -14.62026 -14.45789 -14.33180 -14.16934 -14.14601 -13.98319 -13.51136 -13.05143 -12.72845 -12.42910 -12.21914 -11.89635 -11.83772 -11.15528 -10.92696 -10.42159 -10.22602 -9.76308 -8.93682 -8.63757 -8.28318 -7.12694 -6.58941 -6.07190 -4.44679 1.72688 1.90831 2.38739 3.22466 3.26865 3.30534 3.34906 3.48294 3.57130 3.63159 4.05864 4.22152 4.30956 4.42141 4.69684 4.91498 4.95238 5.03612 5.19934 5.97997 6.15450 6.27390 6.50036 6.88709 7.41612 7.54620 7.79064 8.02856 8.46131 9.04435 9.11929 9.41966 10.69339 11.03406 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.053921 B = 0.003086 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.148914 B = 9072.117824 C = 9270.525100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.490 4.490 8 H 0.072 0.928 9 C 0.512 3.488 10 O -0.593 6.593 11 N -0.636 5.636 12 C 0.437 3.563 13 C -0.256 4.256 14 C 0.094 3.906 15 N -0.415 5.415 16 C 0.149 3.851 17 C -0.196 4.196 18 C 0.459 3.541 19 F -0.182 7.182 20 F -0.181 7.181 21 F -0.183 7.183 22 N -0.514 5.514 23 H 0.436 0.564 24 H 0.268 0.732 25 H 0.189 0.811 26 H 0.178 0.822 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -21.859 -1.739 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.525 4.525 8 H 0.090 0.910 9 C 0.318 3.682 10 O -0.479 6.479 11 N -0.387 5.387 12 C 0.175 3.825 13 C -0.287 4.287 14 C -0.035 4.035 15 N -0.211 5.211 16 C 0.025 3.975 17 C -0.236 4.236 18 C 0.404 3.596 19 F -0.164 7.164 20 F -0.163 7.163 21 F -0.164 7.164 22 N -0.248 5.248 23 H 0.282 0.718 24 H 0.078 0.922 25 H 0.206 0.794 26 H 0.195 0.805 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.142 -21.699 -1.723 21.767 hybrid contribution 0.312 0.297 -0.116 0.446 sum 0.454 -21.402 -1.839 21.486 Atomic orbital electron populations 1.70014 1.07139 1.27283 1.34595 1.25879 0.94708 1.00494 0.93207 0.86395 0.79812 0.80752 0.79561 1.19229 1.20616 1.19220 1.20862 0.94067 0.88789 1.48813 0.90997 1.18747 0.86225 0.85606 0.77587 1.90476 1.16322 1.88654 1.52459 1.69427 1.40818 0.96482 1.31924 1.19396 0.89104 0.85000 0.89042 1.23116 0.97564 0.95635 1.12398 1.22517 0.88632 0.92780 0.99577 1.45553 0.99108 1.00174 1.76234 1.21370 1.05734 0.76259 0.94110 1.23575 1.09004 0.88335 1.02699 1.20385 0.73687 0.91895 0.73628 1.93204 1.59018 1.87872 1.76269 1.93217 1.96006 1.90188 1.36864 1.93205 1.44188 1.93664 1.85383 1.44037 1.01634 0.99267 1.79906 0.71841 0.92157 0.79388 0.80489 0.88412 0.87452 0.86185 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -23.33 11.82 55.55 0.66 -22.67 16 2 C 0.08 2.24 5.50 -17.36 -0.10 2.14 16 3 Si 0.91 21.05 29.56 -169.99 -5.02 16.03 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.49 -15.17 9.63 -35.67 -0.34 -15.51 16 8 H 0.07 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.51 16.06 7.66 -13.37 -0.10 15.95 16 10 O -0.59 -19.40 11.95 4.80 0.06 -19.35 16 11 N -0.64 -17.26 10.53 -12.63 -0.13 -17.39 16 12 C 0.44 9.62 8.07 -155.20 -1.25 8.37 16 13 C -0.26 -5.18 9.54 -39.53 -0.38 -5.56 16 14 C 0.09 1.27 11.46 -16.63 -0.19 1.08 16 15 N -0.41 -4.89 3.64 -61.02 -0.22 -5.12 16 16 C 0.15 1.01 6.19 -4.04 -0.03 0.99 16 17 C -0.20 -1.17 5.58 -26.73 -0.15 -1.32 16 18 C 0.46 3.10 3.16 37.16 0.12 3.22 16 19 F -0.18 -1.31 16.80 2.25 0.04 -1.27 16 20 F -0.18 -1.48 17.32 2.25 0.04 -1.45 16 21 F -0.18 -1.39 16.80 2.25 0.04 -1.35 16 22 N -0.51 -7.97 7.38 31.33 0.23 -7.74 16 23 H 0.44 5.63 8.96 -182.56 -1.64 4.00 16 24 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 25 H 0.19 4.52 5.76 -52.49 -0.30 4.22 16 26 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.10 0.57 7.80 -51.93 -0.41 0.16 16 28 H 0.11 0.53 7.80 -51.93 -0.41 0.13 16 29 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 284.72 15.07 4.29 4.29 Total: -1.00 -38.79 284.72 -6.01 -44.80 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.56 Total: 1.86 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -2.42 Total: 9.36 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.53 Total: -52.92 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.06 Total: -19.35 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.11 Total: -4.07 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -38.79 -6.01 -44.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425102674.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.292 kcal (2) G-P(sol) polarization free energy of solvation -38.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds