Wall clock time and date at job start Thu Apr 9 2020 13:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37291 * 121.99930 * 2 1 4 4 C 1.40481 * 128.15261 * 0.04287 * 3 2 1 5 5 C 1.37390 * 120.58896 * 179.97438 * 4 3 2 6 6 C 1.38745 * 120.43153 * 0.02562 * 5 4 3 7 7 C 1.37573 * 119.89064 * 359.94484 * 6 5 4 8 8 C 1.39321 * 113.20596 * 180.02562 * 3 2 1 9 9 S 1.76129 * 109.50331 * 359.97438 * 8 3 2 10 10 C 1.34615 * 121.99884 * 180.02562 * 2 1 3 11 11 N 1.32245 * 124.95528 * 0.02562 * 10 2 1 12 12 N 1.40100 * 119.99935 * 179.97438 * 11 10 2 13 13 C 1.34775 * 119.99776 * 179.97438 * 12 11 10 14 14 O 1.22191 * 120.00262 * 0.02562 * 13 12 11 15 15 C 1.39210 * 120.00037 * 179.97438 * 13 12 11 16 16 H 1.08001 * 120.00032 * 359.97438 * 15 13 12 17 17 C 1.39829 * 120.00075 * 180.02562 * 15 13 12 18 18 N 1.30833 * 120.00155 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 120.00135 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46986 * 59.99627 * 19 17 15 21 21 H 1.48494 * 109.47081 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46871 * 299.99837 * 19 17 15 23 23 H 1.08995 * 109.47395 * 90.00012 * 1 2 3 24 24 H 1.09006 * 109.47419 * 210.00338 * 1 2 3 25 25 H 1.09008 * 109.47459 * 329.99713 * 1 2 3 26 26 H 1.07997 * 119.71177 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.78335 * 179.97438 * 5 4 3 28 28 H 1.08000 * 120.05335 * 179.97438 * 6 5 4 29 29 H 1.08007 * 119.85607 * 180.02562 * 7 6 5 30 30 H 0.96996 * 120.00390 * 359.97438 * 12 11 10 31 31 H 0.97000 * 120.00313 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1924 1.1643 0.0000 4 6 1.7155 2.4857 0.0008 5 6 2.5905 3.5448 0.0012 6 6 3.9604 3.3247 0.0003 7 6 4.4480 2.0382 0.0001 8 6 3.5693 0.9513 -0.0006 9 16 3.8966 -0.7793 -0.0004 10 6 2.1783 -1.1416 -0.0005 11 7 1.6606 -2.3585 -0.0015 12 7 2.5028 -3.4781 -0.0025 13 6 1.9752 -4.7182 -0.0031 14 8 0.7623 -4.8662 -0.0031 15 6 2.8120 -5.8307 -0.0046 16 1 3.8841 -5.7000 -0.0058 17 6 2.2646 -7.1174 -0.0057 18 7 0.9659 -7.2758 -0.0047 19 14 3.3876 -8.6102 -0.0070 20 1 4.2447 -8.5860 1.2055 21 1 2.5663 -9.8474 -0.0086 22 1 4.2445 -8.5839 -1.2195 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5139 26 1 0.6515 2.6707 0.0012 27 1 2.2096 4.5554 0.0014 28 1 4.6428 4.1618 0.0002 29 1 5.5145 1.8675 -0.0002 30 1 3.4656 -3.3607 -0.0028 31 1 0.5862 -8.1684 -0.0059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588459758.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:49:56 Heat of formation + Delta-G solvation = 55.816659 kcal Electronic energy + Delta-G solvation = -18060.889601 eV Core-core repulsion = 15049.071084 eV Total energy + Delta-G solvation = -3011.818517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.42648 -37.76703 -37.07934 -34.42261 -32.52516 -31.33566 -30.65805 -29.64964 -27.43678 -26.19653 -23.54413 -22.31329 -20.77465 -20.09176 -18.61197 -17.89708 -16.44078 -16.13579 -15.93616 -15.59616 -15.45839 -14.54003 -14.17452 -14.05939 -13.80137 -13.13010 -12.96928 -12.66065 -12.46633 -12.03284 -11.83806 -11.63816 -11.42757 -11.09488 -10.86366 -10.62503 -10.39580 -10.23141 -9.93292 -9.56253 -9.00306 -8.40526 -8.14838 -7.75098 -6.51007 -6.38764 -4.95914 1.09142 1.17451 1.46275 1.90549 2.51952 2.62374 3.08164 3.12319 3.15200 3.57746 3.94263 4.28638 4.42786 4.57062 4.77795 4.99411 5.17033 5.21565 5.36031 5.48876 5.63881 5.77743 5.79393 5.84804 6.07215 6.15033 6.36175 6.59296 7.06287 7.08688 7.21138 7.88972 7.98676 8.57616 8.76488 9.31353 10.39254 10.66912 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.040404 B = 0.003997 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.842476 B = 7003.560628 C = 7681.259579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.505 5.505 3 C 0.183 3.817 4 C -0.148 4.148 5 C -0.075 4.075 6 C -0.154 4.154 7 C -0.043 4.043 8 C -0.177 4.177 9 S 0.010 5.990 10 C 0.229 3.771 11 N -0.222 5.222 12 N -0.576 5.576 13 C 0.561 3.439 14 O -0.558 6.558 15 C -0.532 4.532 16 H 0.071 0.929 17 C 0.088 3.912 18 N -0.743 5.743 19 Si 0.919 3.081 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.265 1.265 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.369 0.631 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 18.896 0.101 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.209 5.209 3 C 0.074 3.926 4 C -0.172 4.172 5 C -0.096 4.096 6 C -0.176 4.176 7 C -0.067 4.067 8 C -0.295 4.295 9 S 0.252 5.748 10 C -0.158 4.158 11 N -0.045 5.045 12 N -0.326 5.326 13 C 0.371 3.629 14 O -0.438 6.438 15 C -0.569 4.569 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.370 5.370 19 Si 0.743 3.257 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.189 1.189 23 H 0.084 0.916 24 H 0.111 0.889 25 H 0.094 0.906 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.205 0.795 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.422 16.945 0.102 17.513 hybrid contribution 0.563 0.415 -0.020 0.700 sum 4.985 17.361 0.083 18.062 Atomic orbital electron populations 1.21885 0.76289 1.04215 1.03029 1.42119 1.06912 1.00584 1.71279 1.17904 0.89336 0.87397 0.98007 1.20357 1.00259 0.88370 1.08174 1.20811 0.93076 0.98152 0.97557 1.20843 0.95471 0.96020 1.05255 1.20396 0.98484 0.90375 0.97474 1.21996 0.94852 0.97390 1.15262 1.85008 1.04171 0.97882 1.87733 1.23851 0.90795 0.90406 1.10740 1.75005 1.20689 0.90855 1.17975 1.47732 1.05312 1.01643 1.77863 1.16404 0.89343 0.78601 0.78564 1.90776 1.14914 1.83362 1.54743 1.19322 0.94399 0.90084 1.53079 0.91115 1.25729 0.95235 1.00196 0.92414 1.70126 1.11551 1.23811 1.31547 0.86238 0.80244 0.79463 0.79797 1.18910 1.20237 1.18919 0.91628 0.88901 0.90636 0.85476 0.85290 0.85371 0.85459 0.79458 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 10.42 59.84 0.62 1.86 16 2 N -0.51 -8.29 3.05 -122.31 -0.37 -8.66 16 3 C 0.18 2.60 6.58 -84.17 -0.55 2.05 16 4 C -0.15 -1.59 9.52 -39.05 -0.37 -1.96 16 5 C -0.08 -0.67 10.01 -39.70 -0.40 -1.06 16 6 C -0.15 -1.40 10.05 -39.64 -0.40 -1.80 16 7 C -0.04 -0.49 10.07 -39.25 -0.40 -0.88 16 8 C -0.18 -2.53 6.47 -38.61 -0.25 -2.78 16 9 S 0.01 0.17 21.95 -107.50 -2.36 -2.19 16 10 C 0.23 4.51 7.98 -89.29 -0.71 3.79 16 11 N -0.22 -5.32 10.54 30.35 0.32 -5.00 16 12 N -0.58 -14.70 6.23 28.64 0.18 -14.52 16 13 C 0.56 16.84 7.60 -15.90 -0.12 16.72 16 14 O -0.56 -18.96 15.15 4.74 0.07 -18.89 16 15 C -0.53 -15.07 9.17 -38.63 -0.35 -15.43 16 16 H 0.07 1.80 7.84 -52.49 -0.41 1.39 16 17 C 0.09 2.42 5.49 -17.38 -0.10 2.32 16 18 N -0.74 -21.97 11.67 55.54 0.65 -21.32 16 19 Si 0.92 19.60 29.56 -169.99 -5.02 14.57 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.09 1.47 7.70 -51.93 -0.40 1.07 16 25 H 0.07 0.76 7.06 -51.92 -0.37 0.39 16 26 H 0.13 1.09 7.18 -52.49 -0.38 0.71 16 27 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 28 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 29 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 30 H 0.37 8.33 7.43 -182.60 -1.36 6.97 16 31 H 0.27 7.26 8.30 -40.82 -0.34 6.92 16 LS Contribution 290.66 15.07 4.38 4.38 Total: -1.00 -36.02 290.66 -8.92 -44.94 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.74 Total: 3.87 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -3.03 Total: 2.83 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.77 Total: -49.51 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.07 Total: -18.89 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.36 Total: -2.19 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -36.02 -8.92 -44.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588459758.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.760 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds