Wall clock time and date at job start Thu Apr 9 2020 13:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37291 * 121.99930 * 2 1 4 4 C 1.40481 * 128.15261 * 0.04287 * 3 2 1 5 5 C 1.37390 * 120.58896 * 179.97438 * 4 3 2 6 6 C 1.38745 * 120.43153 * 0.02562 * 5 4 3 7 7 C 1.37573 * 119.89064 * 359.94484 * 6 5 4 8 8 C 1.39321 * 113.20596 * 180.02562 * 3 2 1 9 9 S 1.76129 * 109.50331 * 359.97438 * 8 3 2 10 10 C 1.34615 * 121.99884 * 180.02562 * 2 1 3 11 11 N 1.32245 * 124.95528 * 0.02562 * 10 2 1 12 12 N 1.40100 * 119.99935 * 179.97438 * 11 10 2 13 13 C 1.34775 * 119.99776 * 179.97438 * 12 11 10 14 14 O 1.22191 * 120.00262 * 0.02562 * 13 12 11 15 15 C 1.39210 * 120.00037 * 179.97438 * 13 12 11 16 16 H 1.08001 * 120.00032 * 359.97438 * 15 13 12 17 17 C 1.39829 * 120.00075 * 180.02562 * 15 13 12 18 18 N 1.30833 * 120.00155 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 120.00135 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46986 * 59.99627 * 19 17 15 21 21 H 1.48494 * 109.47081 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46871 * 299.99837 * 19 17 15 23 23 H 1.08995 * 109.47395 * 90.00012 * 1 2 3 24 24 H 1.09006 * 109.47419 * 210.00338 * 1 2 3 25 25 H 1.09008 * 109.47459 * 329.99713 * 1 2 3 26 26 H 1.07997 * 119.71177 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.78335 * 179.97438 * 5 4 3 28 28 H 1.08000 * 120.05335 * 179.97438 * 6 5 4 29 29 H 1.08007 * 119.85607 * 180.02562 * 7 6 5 30 30 H 0.96996 * 120.00390 * 359.97438 * 12 11 10 31 31 H 0.97000 * 120.00313 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1924 1.1643 0.0000 4 6 1.7155 2.4857 0.0008 5 6 2.5905 3.5448 0.0012 6 6 3.9604 3.3247 0.0003 7 6 4.4480 2.0382 0.0001 8 6 3.5693 0.9513 -0.0006 9 16 3.8966 -0.7793 -0.0004 10 6 2.1783 -1.1416 -0.0005 11 7 1.6606 -2.3585 -0.0015 12 7 2.5028 -3.4781 -0.0025 13 6 1.9752 -4.7182 -0.0031 14 8 0.7623 -4.8662 -0.0031 15 6 2.8120 -5.8307 -0.0046 16 1 3.8841 -5.7000 -0.0058 17 6 2.2646 -7.1174 -0.0057 18 7 0.9659 -7.2758 -0.0047 19 14 3.3876 -8.6102 -0.0070 20 1 4.2447 -8.5860 1.2055 21 1 2.5663 -9.8474 -0.0086 22 1 4.2445 -8.5839 -1.2195 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5139 26 1 0.6515 2.6707 0.0012 27 1 2.2096 4.5554 0.0014 28 1 4.6428 4.1618 0.0002 29 1 5.5145 1.8675 -0.0002 30 1 3.4656 -3.3607 -0.0028 31 1 0.5862 -8.1684 -0.0059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588459758.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:49:56 Heat of formation + Delta-G solvation = 30.376104 kcal Electronic energy + Delta-G solvation = -18061.992786 eV Core-core repulsion = 15049.071084 eV Total energy + Delta-G solvation = -3012.921702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.55443 -39.61815 -38.40009 -36.18264 -34.64617 -32.29969 -32.17633 -30.91632 -29.05653 -27.81888 -24.70477 -23.40293 -22.24575 -21.77667 -19.88323 -19.68580 -17.90395 -17.69487 -17.31456 -16.99748 -16.87138 -15.84359 -15.53964 -15.09953 -15.06672 -14.95690 -14.61859 -13.98165 -13.49238 -13.41461 -13.32385 -13.06840 -12.76004 -12.73461 -12.54427 -12.06486 -11.86755 -11.60265 -11.12596 -11.03098 -10.95056 -10.02265 -9.92012 -9.26610 -8.44675 -8.08517 -7.12538 0.03930 0.12752 0.23236 0.69691 1.05408 1.26286 1.40268 1.43432 1.56661 2.20437 2.37721 2.70210 2.71540 3.58281 3.62231 3.92633 4.06267 4.29705 4.39131 4.42253 4.42650 4.53026 4.69974 4.92021 5.00209 5.14218 5.35797 5.54559 5.66179 5.73318 5.82407 5.99558 6.04179 6.63913 6.82048 7.34997 8.37842 8.55591 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.040404 B = 0.003997 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.842476 B = 7003.560628 C = 7681.259579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.509 5.509 3 C 0.146 3.854 4 C -0.140 4.140 5 C -0.064 4.064 6 C -0.134 4.134 7 C -0.052 4.052 8 C -0.197 4.197 9 S 0.005 5.995 10 C 0.254 3.746 11 N -0.300 5.300 12 N -0.582 5.582 13 C 0.547 3.453 14 O -0.618 6.618 15 C -0.559 4.559 16 H 0.092 0.908 17 C 0.031 3.969 18 N -0.798 5.798 19 Si 1.013 2.987 20 H -0.250 1.250 21 H -0.268 1.268 22 H -0.250 1.250 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.118 0.882 26 H 0.152 0.848 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.145 0.855 30 H 0.377 0.623 31 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.457 22.353 0.099 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.214 5.214 3 C 0.040 3.960 4 C -0.163 4.163 5 C -0.084 4.084 6 C -0.155 4.155 7 C -0.075 4.075 8 C -0.315 4.315 9 S 0.247 5.753 10 C -0.133 4.133 11 N -0.126 5.126 12 N -0.330 5.330 13 C 0.358 3.642 14 O -0.504 6.504 15 C -0.595 4.595 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.426 5.426 19 Si 0.830 3.170 20 H -0.174 1.174 21 H -0.192 1.192 22 H -0.174 1.174 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.170 0.830 27 H 0.190 0.810 28 H 0.185 0.815 29 H 0.162 0.838 30 H 0.215 0.785 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.597 20.558 0.100 21.590 hybrid contribution 0.005 -0.052 -0.019 0.056 sum 6.601 20.505 0.081 21.542 Atomic orbital electron populations 1.22022 0.75171 1.04767 1.03673 1.42468 1.07900 1.00337 1.70704 1.18352 0.89170 0.87858 1.00659 1.20817 1.02195 0.86925 1.06407 1.21401 0.92748 0.99496 0.94754 1.21403 0.96470 0.95945 1.01705 1.20774 0.99127 0.90372 0.97245 1.22234 0.95744 0.96007 1.17504 1.84962 1.01880 1.01297 1.87210 1.24329 0.92981 0.90558 1.05401 1.75061 1.20864 0.91572 1.25153 1.46942 1.05581 1.01737 1.78764 1.16804 0.88891 0.80337 0.78199 1.90700 1.17066 1.84942 1.57732 1.19887 0.95434 0.90779 1.53449 0.88956 1.27140 0.97023 1.03953 0.90711 1.70290 1.14485 1.25288 1.32498 0.84862 0.77568 0.73912 0.80684 1.17379 1.19206 1.17399 0.90965 0.91988 0.86358 0.82989 0.80997 0.81458 0.83760 0.78521 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.41 10.42 127.77 1.33 3.74 16 2 N -0.51 -16.82 3.05 -540.88 -1.65 -18.47 16 3 C 0.15 3.88 6.58 39.10 0.26 4.13 16 4 C -0.14 -2.41 9.52 22.62 0.22 -2.20 16 5 C -0.06 -0.74 10.01 22.19 0.22 -0.52 16 6 C -0.13 -1.65 10.05 22.23 0.22 -1.42 16 7 C -0.05 -0.97 10.07 22.48 0.23 -0.75 16 8 C -0.20 -5.32 6.47 22.90 0.15 -5.17 16 9 S 0.00 0.15 21.95 -56.49 -1.24 -1.09 16 10 C 0.25 10.49 7.98 179.88 1.44 11.93 16 11 N -0.30 -15.55 10.54 -57.88 -0.61 -16.16 16 12 N -0.58 -31.93 6.23 -181.33 -1.13 -33.06 16 13 C 0.55 35.16 7.60 84.47 0.64 35.81 16 14 O -0.62 -45.39 15.15 -5.94 -0.09 -45.48 16 15 C -0.56 -33.13 9.17 22.89 0.21 -32.92 16 16 H 0.09 4.83 7.84 -2.91 -0.02 4.81 16 17 C 0.03 1.72 5.49 85.23 0.47 2.19 16 18 N -0.80 -49.54 11.67 21.80 0.25 -49.29 16 19 Si 1.01 40.64 29.56 68.60 2.03 42.66 16 20 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 21 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 2.12 7.70 -2.38 -0.02 2.10 16 25 H 0.12 2.15 7.06 -2.38 -0.02 2.13 16 26 H 0.15 1.83 7.18 -2.91 -0.02 1.81 16 27 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 28 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 29 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.38 18.24 7.43 -213.33 -1.58 16.66 16 31 H 0.28 15.61 8.30 -92.71 -0.77 14.84 16 Total: -1.00 -87.63 290.66 2.54 -85.09 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.40 Total: 20.96 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 5.38 Total: 14.82 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -3.13 Total: -116.97 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -0.09 Total: -45.48 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.24 Total: -1.09 kcal Total: -87.63 2.54 -85.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588459758.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.466 kcal (2) G-P(sol) polarization free energy of solvation -87.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds