Wall clock time and date at job start Thu Apr 9 2020 13:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47305 * 119.99745 * 2 1 3 5 5 H 1.07994 * 119.99922 * 119.99842 * 4 2 1 6 6 C 1.37881 * 120.00088 * 300.00129 * 4 2 1 7 7 N 1.31515 * 119.99620 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99916 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47179 * 90.00020 * 8 6 4 10 10 H 1.48508 * 109.47068 * 209.99634 * 8 6 4 11 11 H 1.48501 * 109.47408 * 329.99840 * 8 6 4 12 12 N 1.46500 * 109.47076 * 239.99858 * 2 1 3 13 13 C 1.34775 * 120.00324 * 85.00086 * 12 2 1 14 14 O 1.21551 * 119.99615 * 359.97438 * 13 12 2 15 15 C 1.47856 * 120.00101 * 180.02562 * 13 12 2 16 16 N 1.28997 * 124.85413 * 359.93906 * 15 13 12 17 17 C 1.33156 * 118.21042 * 180.02562 * 16 15 13 18 18 C 1.41366 * 129.83122 * 180.02562 * 17 16 15 19 19 N 1.31024 * 120.66468 * 179.97438 * 18 17 16 20 20 C 1.32352 * 122.68435 * 0.02562 * 19 18 17 21 21 C 1.36539 * 121.01511 * 359.97299 * 20 19 18 22 22 C 1.39645 * 119.13811 * 0.02562 * 21 20 19 23 23 S 1.75909 * 132.42866 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.46818 * 60.00203 * 1 2 3 25 25 H 1.08998 * 109.46852 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46748 * 300.00213 * 1 2 3 27 27 H 0.97002 * 119.99374 * 179.97438 * 7 6 4 28 28 H 0.97002 * 120.00102 * 264.99703 * 12 2 1 29 29 H 1.07992 * 119.66557 * 359.97159 * 18 17 16 30 30 H 1.07996 * 119.49712 * 179.97438 * 20 19 18 31 31 H 1.07996 * 120.42695 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.6298 -0.5458 4.4123 10 1 1.3432 -0.9490 5.1121 11 1 2.4860 -2.5661 3.7120 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0184 -2.3572 14 8 1.8576 1.1609 -2.4119 15 6 2.6394 -0.7156 -3.5645 16 7 2.9727 -1.9609 -3.6123 17 6 3.4008 -2.4538 -4.7728 18 6 3.8225 -3.7628 -5.1002 19 7 4.2127 -4.0545 -6.3165 20 6 4.2365 -3.1614 -7.2930 21 6 3.8480 -1.8707 -7.0755 22 6 3.4208 -1.4948 -5.8003 23 16 2.8556 0.0349 -5.1409 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7090 1.1615 3.4844 28 1 2.2491 -1.6318 -1.1526 29 1 3.8229 -4.5299 -4.3402 30 1 4.5683 -3.4581 -8.2770 31 1 3.8708 -1.1498 -7.8794 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590434848.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:00 Heat of formation + Delta-G solvation = 32.784920 kcal Electronic energy + Delta-G solvation = -18028.313561 eV Core-core repulsion = 15015.496313 eV Total energy + Delta-G solvation = -3012.817248 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04255 -39.21651 -37.61734 -34.99625 -32.58353 -32.34941 -30.81660 -28.93760 -26.09826 -25.31398 -24.44155 -22.76254 -21.22423 -19.64573 -18.92831 -17.85497 -17.25739 -16.48968 -15.66912 -15.53776 -15.30436 -14.84714 -14.47136 -14.35721 -14.24396 -13.30064 -12.90523 -12.81408 -12.49005 -11.81261 -11.77426 -11.15769 -11.03225 -10.87768 -10.83094 -10.43899 -10.30263 -10.27352 -9.90324 -9.54724 -9.25039 -9.13595 -8.63169 -8.59057 -8.12284 -6.18151 -4.27726 -0.19446 0.69034 0.85914 1.41261 1.80058 3.23269 3.28862 3.30187 3.31534 3.36580 3.59660 3.99820 4.08349 4.24280 4.33761 4.60845 4.86533 5.14053 5.16269 5.32336 5.42299 5.67829 6.08748 6.72332 6.84644 7.02059 7.10237 7.22795 7.42107 7.59056 7.62127 7.79770 8.04401 8.41879 8.60762 8.85139 9.39338 10.87993 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.030041 B = 0.004106 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.847141 B = 6818.019187 C = 7533.381854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.669 5.669 13 C 0.573 3.427 14 O -0.532 6.532 15 C 0.085 3.915 16 N -0.425 5.425 17 C 0.030 3.970 18 C 0.191 3.809 19 N -0.477 5.477 20 C 0.097 3.903 21 C -0.121 4.121 22 C -0.162 4.162 23 S 0.168 5.832 24 H 0.017 0.983 25 H 0.030 0.970 26 H 0.094 0.906 27 H 0.266 0.734 28 H 0.402 0.598 29 H 0.175 0.825 30 H 0.167 0.833 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -6.046 -17.309 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.574 4.574 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.316 5.316 13 C 0.351 3.649 14 O -0.409 6.409 15 C -0.201 4.201 16 N -0.142 5.142 17 C -0.097 4.097 18 C 0.020 3.980 19 N -0.186 5.186 20 C -0.053 4.053 21 C -0.146 4.146 22 C -0.289 4.289 23 S 0.425 5.575 24 H 0.036 0.964 25 H 0.049 0.951 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.236 0.764 29 H 0.192 0.808 30 H 0.184 0.816 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.482 -5.097 -17.281 18.566 hybrid contribution 0.399 -0.839 0.824 1.242 sum 4.881 -5.936 -16.457 18.163 Atomic orbital electron populations 1.22102 0.97831 0.99560 1.01236 1.18989 0.91452 0.94165 0.79290 0.92761 1.21183 1.32781 1.13485 0.89997 0.91747 1.24875 0.94673 0.94938 0.99081 1.69896 1.35665 1.22390 1.24078 0.86397 0.78602 0.79914 0.81920 1.20493 1.21016 1.19715 1.46496 1.61673 1.14374 1.09106 1.16983 0.79969 0.86137 0.81767 1.90827 1.51743 1.14390 1.83953 1.28082 1.01260 0.91666 0.99043 1.65876 1.11490 1.11598 1.25241 1.20196 1.04644 0.97348 0.87518 1.22850 0.90096 0.91654 0.93444 1.67496 1.14495 1.36432 1.00226 1.22396 0.95741 0.88642 0.98502 1.21070 1.00661 0.98437 0.94391 1.24600 1.05421 0.98923 0.99952 1.85222 1.61747 1.06859 1.03697 0.96437 0.95097 0.88713 0.92442 0.76374 0.80819 0.81625 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.55 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 4 C -0.54 -14.00 8.73 -34.44 -0.30 -14.30 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.67 -14.22 5.07 -55.87 -0.28 -14.50 16 13 C 0.57 11.71 7.80 -12.33 -0.10 11.62 16 14 O -0.53 -12.30 16.57 5.32 0.09 -12.21 16 15 C 0.08 1.44 7.41 -14.81 -0.11 1.33 16 16 N -0.43 -6.73 10.08 -8.53 -0.09 -6.82 16 17 C 0.03 0.41 6.99 -85.23 -0.60 -0.19 16 18 C 0.19 2.21 11.30 -16.71 -0.19 2.02 16 19 N -0.48 -5.25 10.28 -12.92 -0.13 -5.38 16 20 C 0.10 0.86 11.12 -17.94 -0.20 0.66 16 21 C -0.12 -1.13 10.09 -39.67 -0.40 -1.53 16 22 C -0.16 -2.03 6.62 -38.18 -0.25 -2.28 16 23 S 0.17 2.30 23.17 -107.50 -2.49 -0.19 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.40 7.81 8.17 -40.82 -0.33 7.48 16 29 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 292.84 15.07 4.41 4.41 Total: -1.00 -29.72 292.84 -7.65 -37.37 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -2.70 Total: 3.52 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.07 Total: 2.14 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.13 Total: -50.40 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.49 Total: -0.19 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.72 -7.65 -37.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434848.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.155 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds