Wall clock time and date at job start Thu Apr 9 2020 13:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00282 * 2 1 4 4 H 1.48505 * 109.46606 * 269.99466 * 3 2 1 5 5 H 1.48503 * 109.47208 * 29.98977 * 3 2 1 6 6 H 1.48492 * 109.47411 * 149.99398 * 3 2 1 7 7 C 1.37878 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00237 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99791 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.88339 * 62.43000 * 9 7 2 11 11 C 1.55153 * 111.00734 * 298.54542 * 9 7 2 12 12 C 1.54323 * 103.10236 * 206.33593 * 11 9 7 13 13 N 1.47486 * 107.03754 * 22.24109 * 12 11 9 14 14 S 1.65599 * 125.59459 * 181.00579 * 13 12 11 15 15 O 1.42097 * 104.27674 * 26.09633 * 14 13 12 16 16 O 1.42102 * 104.27777 * 153.95182 * 14 13 12 17 17 C 1.81393 * 104.45057 * 270.02297 * 14 13 12 18 18 C 1.54038 * 113.81765 * 283.50846 * 17 14 13 19 19 O 1.44443 * 85.42463 * 223.23258 * 18 17 14 20 20 C 1.44173 * 93.38051 * 24.08980 * 19 18 17 21 21 C 1.47428 * 108.75727 * 1.02624 * 13 12 11 22 22 H 0.96996 * 119.99587 * 0.02562 * 1 2 3 23 23 H 0.96703 * 114.00222 * 297.56252 * 10 9 7 24 24 H 1.09002 * 110.72030 * 324.78859 * 11 9 7 25 25 H 1.09003 * 110.72184 * 87.88510 * 11 9 7 26 26 H 1.09000 * 109.88693 * 141.69901 * 12 11 9 27 27 H 1.09005 * 109.88012 * 262.86516 * 12 11 9 28 28 H 1.09007 * 112.99898 * 55.32769 * 17 14 13 29 29 H 1.08997 * 113.86257 * 337.34425 * 18 17 14 30 30 H 1.08995 * 113.86628 * 109.04535 * 18 17 14 31 31 H 1.08998 * 113.86851 * 221.76841 * 20 19 18 32 32 H 1.09001 * 113.87368 * 90.05795 * 20 19 18 33 33 H 1.09000 * 110.36462 * 217.05803 * 21 13 12 34 34 H 1.08998 * 110.36847 * 94.73011 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4616 -2.6315 -1.1833 11 6 0.3730 -2.6344 1.2726 12 6 0.2533 -4.1623 1.4542 13 7 1.3938 -4.7723 0.7454 14 16 1.6980 -6.3958 0.6265 15 8 0.4200 -7.0025 0.7605 16 8 2.4480 -6.5249 -0.5736 17 6 2.7341 -6.7690 2.0679 18 6 4.1986 -6.3166 1.9151 19 8 4.5333 -7.5979 2.4919 20 6 3.2928 -8.2044 2.0775 21 6 2.2181 -3.6987 0.1611 22 1 -0.4849 0.8400 -0.0004 23 1 -0.2244 -1.9563 -1.2762 24 1 0.8670 -2.1814 2.1321 25 1 -0.6081 -2.1870 1.1134 26 1 0.2945 -4.4140 2.5139 27 1 -0.6840 -4.5145 1.0235 28 1 2.2767 -6.4683 3.0105 29 1 4.5189 -6.2019 0.8796 30 1 4.4651 -5.4660 2.5423 31 1 2.8423 -8.8478 2.8332 32 1 3.3358 -8.6674 1.0917 33 1 2.6070 -4.0049 -0.8100 34 1 3.0357 -3.4394 0.8337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592077828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:04 Heat of formation + Delta-G solvation = -118.876526 kcal Electronic energy + Delta-G solvation = -20765.508070 eV Core-core repulsion = 17406.512618 eV Total energy + Delta-G solvation = -3358.995452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39161 -38.06275 -36.95980 -35.79683 -34.27135 -32.23320 -30.31521 -29.27370 -28.31959 -26.93396 -24.89926 -21.97752 -21.28446 -19.86335 -18.78472 -17.83592 -17.39676 -16.84120 -16.80376 -15.98544 -15.43153 -14.97849 -14.56467 -14.34486 -13.97255 -13.40156 -13.20767 -12.95084 -12.51437 -12.47606 -12.05564 -11.95854 -11.85437 -11.83075 -11.75974 -11.36084 -11.06987 -10.84693 -10.54585 -10.47612 -10.37231 -10.08295 -9.99819 -9.40715 -8.71481 -8.39848 -8.21641 -6.30176 -4.38894 0.30696 2.73248 3.18175 3.18360 3.25980 3.28104 3.47245 3.99397 4.23377 4.34062 4.60812 4.78197 4.91682 4.96514 5.15063 5.33430 5.41012 5.63949 5.69637 5.73306 5.89574 5.94154 6.19964 6.35828 6.55068 6.72578 6.89038 6.98518 7.30317 7.36056 7.71468 8.00947 8.63523 9.29564 9.40121 10.77091 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029985 B = 0.005579 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.589287 B = 5017.911955 C = 5461.566671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.253 3.747 10 O -0.582 6.582 11 C -0.133 4.133 12 C 0.121 3.879 13 N -1.002 6.002 14 S 2.625 3.375 15 O -0.954 6.954 16 O -0.947 6.947 17 C -0.691 4.691 18 C 0.074 3.926 19 O -0.367 6.367 20 C 0.072 3.928 21 C 0.129 3.871 22 H 0.268 0.732 23 H 0.380 0.620 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.162 0.838 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -9.615 5.829 11.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.211 3.789 10 O -0.390 6.390 11 C -0.173 4.173 12 C -0.004 4.004 13 N -0.842 5.842 14 S 2.716 3.284 15 O -0.945 6.945 16 O -0.937 6.937 17 C -0.798 4.798 18 C -0.003 4.003 19 O -0.285 6.285 20 C -0.007 4.007 21 C 0.004 3.996 22 H 0.078 0.922 23 H 0.230 0.770 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.180 0.820 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.832 -10.799 5.234 12.597 hybrid contribution 0.081 1.734 0.820 1.919 sum 3.913 -9.065 6.054 11.582 Atomic orbital electron populations 1.69724 1.05974 1.27634 1.49947 1.24995 0.95004 0.99503 0.93504 0.86432 0.79744 0.82498 0.78348 1.20413 1.21127 1.19768 1.21464 0.93678 0.90230 1.52172 0.91703 1.19577 0.86941 0.90327 0.82045 1.86144 1.51528 1.56946 1.44391 1.23173 1.03070 0.90040 1.00990 1.21934 0.87856 0.96741 0.93842 1.58469 1.36118 1.22197 1.67382 1.04606 0.74951 0.72746 0.76053 1.93563 1.37636 1.75928 1.87325 1.93594 1.74461 1.85313 1.40330 1.33846 1.14222 1.06397 1.25303 1.23681 0.86640 0.88943 1.01078 1.89740 1.39036 1.24444 1.75315 1.23524 0.83700 0.91463 1.02012 1.22211 0.93453 0.86663 0.97242 0.92213 0.76983 0.91487 0.89635 0.93357 0.91895 0.82027 0.87949 0.87188 0.87310 0.89141 0.90513 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.51 10.75 55.43 0.60 -21.92 16 2 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 3 Si 0.90 19.59 29.54 -169.99 -5.02 14.57 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -13.37 8.27 -34.44 -0.28 -13.65 16 8 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 9 C 0.25 5.86 0.87 -89.62 -0.08 5.78 16 10 O -0.58 -14.60 13.16 -35.23 -0.46 -15.07 16 11 C -0.13 -2.77 5.37 -24.90 -0.13 -2.91 16 12 C 0.12 2.18 6.93 -2.81 -0.02 2.16 16 13 N -1.00 -17.93 3.63 -111.06 -0.40 -18.34 16 14 S 2.62 41.78 5.59 -107.50 -0.60 41.18 16 15 O -0.95 -17.48 17.60 -57.54 -1.01 -18.50 16 16 O -0.95 -17.39 16.65 -57.54 -0.96 -18.35 16 17 C -0.69 -8.07 4.75 -25.65 -0.12 -8.19 16 18 C 0.07 0.86 8.80 37.64 0.33 1.19 16 19 O -0.37 -4.67 12.46 -35.23 -0.44 -5.11 16 20 C 0.07 0.76 8.82 37.64 0.33 1.09 16 21 C 0.13 2.56 6.25 -2.52 -0.02 2.54 16 22 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 23 H 0.38 9.53 7.57 45.56 0.34 9.88 16 24 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 25 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.16 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.10 1.16 7.57 -51.93 -0.39 0.77 16 30 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.08 1.59 7.67 -51.93 -0.40 1.19 16 34 H 0.07 1.20 8.03 -51.93 -0.42 0.79 16 LS Contribution 297.36 15.07 4.48 4.48 Total: -1.00 -30.43 297.36 -7.66 -38.08 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -3.75 Total: 9.22 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.08 Total: -10.26 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.19 Total: -40.25 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -2.87 Total: -57.02 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 41.78 SS G_CDS: -0.60 Total: 41.18 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.43 -7.66 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.793 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds