Wall clock time and date at job start Thu Apr 9 2020 13:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34785 * 120.00043 * 2 1 4 4 O 1.21273 * 119.99794 * 185.28465 * 3 2 1 5 5 C 1.50703 * 119.99675 * 5.28791 * 3 2 1 6 6 S 1.80996 * 109.46872 * 180.02562 * 5 3 2 7 7 C 1.76192 * 100.00011 * 179.97438 * 6 5 3 8 8 H 1.08004 * 120.00107 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99978 * 180.02562 * 7 6 5 10 10 N 1.31630 * 119.99913 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 119.99911 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47193 * 90.00412 * 11 9 7 13 13 H 1.48499 * 109.47068 * 209.99986 * 11 9 7 14 14 H 1.48491 * 109.47341 * 330.00048 * 11 9 7 15 15 C 1.39575 * 120.00175 * 179.97438 * 2 1 3 16 16 C 1.39409 * 120.37930 * 112.92499 * 15 2 1 17 17 C 1.38238 * 118.44768 * 179.72424 * 16 15 2 18 18 C 1.39595 * 119.13749 * 0.25525 * 17 16 15 19 19 C 1.43205 * 119.65878 * 179.97438 * 18 17 16 20 20 N 6.68911 * 119.46422 * 178.16767 * 2 1 3 21 21 N 1.32853 * 120.68589 * 359.97438 * 18 17 16 22 22 C 1.31447 * 121.68768 * 0.02562 * 21 18 17 23 23 H 1.09002 * 109.47279 * 270.00002 * 1 2 3 24 24 H 1.08998 * 109.47227 * 30.00244 * 1 2 3 25 25 H 1.08997 * 109.46962 * 149.99773 * 1 2 3 26 26 H 1.08994 * 109.46721 * 299.99833 * 5 3 2 27 27 H 1.08999 * 109.46932 * 59.99765 * 5 3 2 28 28 H 0.96993 * 120.00404 * 179.97438 * 10 9 7 29 29 H 1.07995 * 120.77486 * 0.02562 * 16 15 2 30 30 H 1.08002 * 120.42962 * 180.27475 * 17 16 15 31 31 H 1.08006 * 119.59167 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3478 1.1694 -0.0967 5 6 1.3901 2.4696 0.1203 6 16 2.5650 3.8460 0.0890 7 6 1.4510 5.2027 0.2405 8 1 0.3887 5.0232 0.3170 9 6 1.9385 6.5021 0.2603 10 7 1.1062 7.5157 0.3729 11 14 3.7757 6.8126 0.1272 12 1 4.1508 6.9581 -1.3022 13 1 4.1216 8.0576 0.8589 14 1 4.5151 5.6689 0.7190 15 6 2.1629 -1.2087 0.0005 16 6 2.9211 -1.5855 -1.1070 17 6 3.6009 -2.7884 -1.0612 18 6 3.5014 -3.5823 0.0827 19 6 4.2005 -4.8307 0.1418 20 7 4.7552 -5.8210 0.1862 21 7 2.7649 -3.1917 1.1171 22 6 2.1064 -2.0541 1.1055 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 0.6946 2.5670 -0.7132 27 1 0.8366 2.4850 1.0591 28 1 1.4468 8.4237 0.3872 29 1 2.9800 -0.9503 -1.9783 30 1 4.2014 -3.1095 -1.8995 31 1 1.5181 -1.7696 1.9654 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593275685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:08 Heat of formation + Delta-G solvation = 23.927322 kcal Electronic energy + Delta-G solvation = -17649.376367 eV Core-core repulsion = 14636.175025 eV Total energy + Delta-G solvation = -3013.201342 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03619 -40.48477 -37.82351 -36.81698 -34.64287 -33.66393 -32.59894 -30.42316 -27.86693 -27.83273 -25.70697 -24.66073 -21.48995 -20.54859 -19.67806 -18.53790 -18.14387 -17.58900 -17.07429 -16.55586 -16.00622 -15.92195 -15.76172 -15.16106 -14.86937 -14.62341 -14.51873 -14.19850 -13.95595 -13.91982 -13.67207 -13.60790 -13.33535 -13.16128 -12.98688 -12.66536 -11.86653 -11.32408 -11.15623 -11.14553 -10.97277 -10.49820 -10.41653 -9.67851 -8.97445 -8.48990 -6.19419 -0.67598 0.08632 0.96968 1.33196 1.34164 1.37558 1.44747 1.52657 1.67262 1.92448 2.26432 2.39626 2.68128 2.73221 2.89811 3.51060 3.57809 3.70270 3.85158 3.95772 4.18943 4.27907 4.49118 4.54794 4.64387 4.70857 4.93612 4.98127 5.16368 5.61300 5.73622 5.98145 6.15432 6.17676 6.55958 6.95407 6.97091 8.63078 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.038667 B = 0.003563 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.958671 B = 7856.206787 C = 8319.537128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.568 5.568 3 C 0.540 3.460 4 O -0.543 6.543 5 C -0.105 4.105 6 S -0.179 6.179 7 C -0.524 4.524 8 H 0.067 0.933 9 C 0.046 3.954 10 N -0.917 5.917 11 Si 0.911 3.089 12 H -0.263 1.263 13 H -0.263 1.263 14 H -0.236 1.236 15 C 0.117 3.883 16 C -0.067 4.067 17 C -0.087 4.087 18 C 0.169 3.831 19 C 0.290 3.710 20 N -0.427 5.427 21 N -0.458 5.458 22 C 0.114 3.886 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.276 0.724 29 H 0.155 0.845 30 H 0.178 0.822 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -19.234 -3.051 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.299 5.299 3 C 0.329 3.671 4 O -0.419 6.419 5 C -0.255 4.255 6 S 0.048 5.952 7 C -0.672 4.672 8 H 0.085 0.915 9 C -0.160 4.160 10 N -0.555 5.555 11 Si 0.733 3.267 12 H -0.188 1.188 13 H -0.188 1.188 14 H -0.160 1.160 15 C 0.023 3.977 16 C -0.094 4.094 17 C -0.110 4.110 18 C 0.032 3.968 19 C -0.026 4.026 20 N -0.104 5.104 21 N -0.168 5.168 22 C -0.048 4.048 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.119 0.881 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.085 0.915 29 H 0.173 0.827 30 H 0.196 0.804 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.081 -21.080 -2.375 21.214 hybrid contribution -1.141 1.704 -0.528 2.118 sum -1.060 -19.376 -2.903 19.621 Atomic orbital electron populations 1.22342 0.74639 1.05587 1.04779 1.45274 1.08859 1.01935 1.73806 1.20214 0.87202 0.84811 0.74865 1.90732 1.15540 1.87047 1.48584 1.23282 1.01811 0.92516 1.07917 1.84793 1.14247 0.99279 1.96879 1.22438 0.94901 0.92422 1.57406 0.91497 1.25528 1.02372 0.94949 0.93119 1.70007 1.36797 0.99655 1.49037 0.85909 0.80667 0.80110 0.79964 1.18756 1.18785 1.15984 1.19016 0.96266 0.87596 0.94858 1.21945 0.94000 0.95272 0.98195 1.22145 0.98036 0.92642 0.98174 1.16444 0.97629 0.89823 0.92887 1.25044 0.92772 0.91978 0.92844 1.81272 1.09842 1.11379 1.07914 1.67533 1.06082 1.16477 1.26703 1.23175 0.96327 0.88336 0.96949 0.89627 0.89273 0.88144 0.86016 0.86226 0.91455 0.82725 0.80422 0.79315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.10 127.77 1.29 1.99 16 2 N -0.57 -10.77 2.93 -654.05 -1.92 -12.69 16 3 C 0.54 15.65 7.57 87.66 0.66 16.31 16 4 O -0.54 -20.22 15.42 -3.01 -0.05 -20.27 16 5 C -0.10 -3.36 4.83 71.24 0.34 -3.02 16 6 S -0.18 -8.31 18.55 -56.49 -1.05 -9.36 16 7 C -0.52 -28.65 10.04 67.96 0.68 -27.97 16 8 H 0.07 3.83 8.03 -2.91 -0.02 3.81 16 9 C 0.05 2.57 5.50 84.86 0.47 3.04 16 10 N -0.92 -53.94 13.97 21.65 0.30 -53.63 16 11 Si 0.91 43.24 27.74 68.60 1.90 45.14 16 12 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.24 -11.13 6.74 99.48 0.67 -10.46 16 15 C 0.12 2.11 4.84 38.43 0.19 2.29 16 16 C -0.07 -1.09 9.45 22.55 0.21 -0.88 16 17 C -0.09 -1.20 9.79 22.60 0.22 -0.98 16 18 C 0.17 3.01 6.59 40.56 0.27 3.28 16 19 C 0.29 5.90 15.53 88.33 1.37 7.27 16 20 N -0.43 -10.34 18.54 19.00 0.35 -9.99 16 21 N -0.46 -8.90 10.27 -188.54 -1.94 -10.83 16 22 C 0.11 1.90 11.01 84.99 0.94 2.84 16 23 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.09 0.94 6.48 -2.39 -0.02 0.93 16 25 H 0.10 0.61 8.05 -2.39 -0.02 0.59 16 26 H 0.12 3.44 7.24 -2.40 -0.02 3.42 16 27 H 0.12 3.47 8.14 -2.40 -0.02 3.45 16 28 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 31 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -72.82 302.18 5.38 -67.44 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: 1.13 Total: 0.00 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 6.64 Total: 4.18 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -3.20 Total: -87.14 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.05 Total: -20.27 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.90 Total: 45.14 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.05 Total: -9.36 kcal Total: -72.82 5.38 -67.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593275685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.368 kcal (2) G-P(sol) polarization free energy of solvation -72.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds