Wall clock time and date at job start Thu Apr 9 2020 13:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00157 * 2 1 4 4 C 1.50699 * 109.47230 * 269.99873 * 3 2 1 5 5 H 1.08003 * 119.99752 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00601 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99707 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00589 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47150 * 59.99620 * 8 6 4 10 10 H 1.48501 * 109.47390 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47049 * 300.00044 * 8 6 4 12 12 C 1.34774 * 120.00070 * 179.97438 * 2 1 3 13 13 O 1.21541 * 120.00531 * 183.39838 * 12 2 1 14 14 C 1.47867 * 119.99903 * 3.39693 * 12 2 1 15 15 N 1.28999 * 124.84772 * 352.71079 * 14 12 2 16 16 C 1.33166 * 118.20978 * 179.97438 * 15 14 12 17 17 C 1.41355 * 129.83634 * 179.97438 * 16 15 14 18 18 N 1.31019 * 120.66964 * 180.02562 * 17 16 15 19 19 C 1.32357 * 122.67941 * 359.97438 * 18 17 16 20 20 C 1.36531 * 121.01501 * 0.05630 * 19 18 17 21 21 C 1.39639 * 119.14050 * 359.95775 * 20 19 18 22 22 S 1.75916 * 132.42896 * 180.02562 * 21 20 19 23 23 H 1.09001 * 109.47528 * 263.93463 * 1 2 3 24 24 H 1.09010 * 109.46824 * 23.93381 * 1 2 3 25 25 H 1.09001 * 109.47085 * 143.93131 * 1 2 3 26 26 H 1.09010 * 109.47291 * 29.99734 * 3 2 1 27 27 H 1.08996 * 109.47336 * 149.99660 * 3 2 1 28 28 H 0.97002 * 120.00011 * 180.02562 * 7 6 4 29 29 H 1.08004 * 119.66949 * 0.03922 * 17 16 15 30 30 H 1.08008 * 119.49227 * 180.02562 * 19 18 17 31 31 H 1.08006 * 120.42806 * 180.23250 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1260 2.8778 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4381 3.4167 -3.4339 9 1 2.1408 3.5934 -4.1347 10 1 4.1805 4.7028 -3.4340 11 1 4.2415 2.3819 -4.1333 12 6 2.1389 -1.1672 0.0005 13 8 3.3527 -1.1682 0.0629 14 6 1.4015 -2.4466 -0.0748 15 7 0.1184 -2.5629 -0.0096 16 6 -0.4081 -3.7832 -0.0924 17 6 -1.7611 -4.1905 -0.0498 18 7 -2.0812 -5.4571 -0.1487 19 6 -1.1775 -6.4135 -0.2922 20 6 0.1549 -6.1203 -0.3436 21 6 0.5625 -4.7885 -0.2435 22 16 2.1485 -4.0277 -0.2670 23 1 -0.3634 -0.1086 1.0219 24 1 -0.3633 0.9394 -0.4169 25 1 -0.3633 -0.8307 -0.6050 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0296 4.4443 -0.8505 29 1 -2.5389 -3.4500 0.0653 30 1 -1.4991 -7.4417 -0.3693 31 1 0.8840 -6.9079 -0.4647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596910907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:23 Heat of formation + Delta-G solvation = 52.914124 kcal Electronic energy + Delta-G solvation = -18289.270344 eV Core-core repulsion = 15277.325964 eV Total energy + Delta-G solvation = -3011.944380 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05869 -39.28730 -37.55108 -35.02089 -32.71839 -32.34927 -30.72485 -27.96355 -26.59407 -25.37347 -24.47373 -23.01231 -22.10953 -19.46810 -18.51406 -17.47733 -16.91022 -16.62041 -15.90065 -15.51696 -15.34312 -14.76145 -14.47524 -14.40740 -14.26308 -13.13271 -12.98121 -12.79301 -12.39307 -12.14365 -12.03383 -11.64691 -11.24574 -11.00663 -10.80637 -10.63132 -10.25384 -10.16590 -9.86131 -9.68922 -9.27760 -9.19853 -8.56273 -8.49411 -7.81118 -6.11040 -4.16881 -0.16084 0.70990 0.88887 1.44661 1.82632 3.29386 3.31180 3.33793 3.36045 3.39053 3.60708 3.95428 4.09610 4.25808 4.39820 4.61890 4.76174 5.03319 5.23705 5.33376 5.42989 5.58233 5.94600 6.09653 6.10557 6.48394 6.87921 7.15788 7.28130 7.37635 7.60661 7.83705 8.11297 8.13716 8.61430 8.88035 9.48279 10.97062 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.004299 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.190720 B = 6512.083320 C = 6718.917612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.562 5.562 3 C 0.243 3.757 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.572 3.428 13 O -0.522 6.522 14 C 0.088 3.912 15 N -0.422 5.422 16 C 0.026 3.974 17 C 0.189 3.811 18 N -0.478 5.478 19 C 0.096 3.904 20 C -0.120 4.120 21 C -0.163 4.163 22 S 0.170 5.830 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.174 0.826 30 H 0.166 0.834 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.256 -17.608 1.631 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.292 5.292 3 C 0.124 3.876 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.352 3.648 13 O -0.398 6.398 14 C -0.196 4.196 15 N -0.139 5.139 16 C -0.101 4.101 17 C 0.018 3.982 18 N -0.187 5.187 19 C -0.054 4.054 20 C -0.145 4.145 21 C -0.290 4.290 22 S 0.426 5.574 23 H 0.068 0.932 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.191 0.809 30 H 0.183 0.817 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.536 -17.525 1.707 19.568 hybrid contribution 0.180 0.389 -0.989 1.078 sum -8.356 -17.137 0.718 19.079 Atomic orbital electron populations 1.22143 0.79631 1.03585 1.01571 1.48089 1.07550 1.06561 1.67030 1.19530 0.92819 0.77178 0.98051 1.21352 1.37196 1.06674 0.91909 0.92311 1.24921 0.95117 0.96208 0.97635 1.69920 1.37992 1.14312 1.30884 0.86518 0.78448 0.77878 0.84372 1.20141 1.21064 1.20108 1.16903 0.86329 0.81395 0.80148 1.90834 1.12010 1.85701 1.51267 1.28139 0.91166 0.99235 1.01086 1.66362 1.10615 1.22601 1.14352 1.20366 0.96911 0.86983 1.05804 1.22808 0.91373 0.92687 0.91363 1.67483 1.38124 1.00471 1.12596 1.22375 0.88380 0.99116 0.95557 1.21068 0.98030 0.93409 1.01968 1.24597 0.98589 0.99702 1.06079 1.85267 1.02836 0.99107 1.70141 0.93208 0.90978 0.89376 0.94073 0.93262 0.92486 0.80914 0.81689 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 9.56 59.85 0.57 1.85 16 2 N -0.56 -12.22 2.86 -184.07 -0.53 -12.75 16 3 C 0.24 6.26 5.16 -5.20 -0.03 6.24 16 4 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.57 12.28 7.68 -12.32 -0.09 12.19 16 13 O -0.52 -12.87 16.48 5.33 0.09 -12.78 16 14 C 0.09 1.54 7.16 -14.80 -0.11 1.43 16 15 N -0.42 -6.54 6.85 -8.53 -0.06 -6.60 16 16 C 0.03 0.35 6.99 -85.23 -0.60 -0.25 16 17 C 0.19 2.12 11.30 -16.71 -0.19 1.93 16 18 N -0.48 -5.17 10.28 -12.92 -0.13 -5.31 16 19 C 0.10 0.85 11.12 -17.94 -0.20 0.65 16 20 C -0.12 -1.13 10.09 -39.68 -0.40 -1.53 16 21 C -0.16 -2.05 6.62 -38.18 -0.25 -2.30 16 22 S 0.17 2.41 23.18 -107.50 -2.49 -0.08 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.23 8.03 -51.92 -0.42 0.82 16 25 H 0.09 1.43 5.37 -51.93 -0.28 1.15 16 26 H 0.04 1.06 8.07 -51.92 -0.42 0.64 16 27 H 0.05 1.41 7.38 -51.93 -0.38 1.02 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 29 H 0.17 1.52 8.06 -52.48 -0.42 1.09 16 30 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 31 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 291.60 15.07 4.39 4.39 Total: -1.00 -32.00 291.60 -7.46 -39.46 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: -2.73 Total: -4.27 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.71 Total: 6.70 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.02 Total: -49.94 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.49 Total: -0.08 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.00 -7.46 -39.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596910907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.371 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds