Wall clock time and date at job start Thu Apr 9 2020 13:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46959 * 2 1 4 4 C 1.36631 * 120.00186 * 263.19109 * 3 2 1 5 5 H 1.08001 * 120.00285 * 196.41529 * 4 3 2 6 6 C 1.39201 * 119.99687 * 16.41537 * 4 3 2 7 7 N 1.31261 * 120.00091 * 31.84877 * 6 4 3 8 8 Si 1.86800 * 119.99956 * 211.84150 * 6 4 3 9 9 H 1.48510 * 109.46688 * 90.00085 * 8 6 4 10 10 H 1.48500 * 109.47457 * 210.00394 * 8 6 4 11 11 H 1.48500 * 109.47274 * 330.00734 * 8 6 4 12 12 C 1.34771 * 119.99903 * 83.19582 * 3 2 1 13 13 O 1.21610 * 120.00242 * 184.11987 * 12 3 2 14 14 C 1.47605 * 120.00211 * 4.11913 * 12 3 2 15 15 N 1.29137 * 124.85525 * 353.74908 * 14 12 3 16 16 C 1.33166 * 118.17851 * 179.97438 * 15 14 12 17 17 C 1.41366 * 129.81616 * 179.97438 * 16 15 14 18 18 N 1.31034 * 120.66289 * 179.97438 * 17 16 15 19 19 C 1.32346 * 122.67871 * 0.11509 * 18 17 16 20 20 C 1.36556 * 121.01383 * 359.85126 * 19 18 17 21 21 C 1.39624 * 119.14702 * 0.08758 * 20 19 18 22 22 S 1.75912 * 132.41347 * 179.97438 * 21 20 19 23 23 H 1.09006 * 109.46821 * 299.99866 * 1 2 3 24 24 H 1.09005 * 109.47160 * 59.99746 * 1 2 3 25 25 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46696 * 240.00441 * 2 1 3 27 27 H 1.08992 * 109.47065 * 120.00551 * 2 1 3 28 28 H 0.97003 * 120.00364 * 179.97438 * 7 6 4 29 29 H 1.07989 * 119.67126 * 0.02562 * 17 16 15 30 30 H 1.08005 * 119.49750 * 179.97438 * 19 18 17 31 31 H 1.07998 * 120.42890 * 180.36449 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3783 1.9786 -1.1749 5 1 2.9768 2.8775 -1.1625 6 6 1.9735 1.4286 -2.3879 7 7 0.8277 0.7937 -2.4708 8 14 3.0610 1.5942 -3.8977 9 1 3.9903 0.4379 -3.9674 10 1 2.2141 1.6229 -5.1171 11 1 3.8434 2.8532 -3.8086 12 6 2.1125 2.0626 1.1589 13 8 2.4461 3.2321 1.1514 14 6 1.8109 1.3896 2.4375 15 7 1.3401 0.1922 2.5481 16 6 1.1170 -0.2854 3.7710 17 6 0.6133 -1.5434 4.1736 18 7 0.4646 -1.8283 5.4439 19 6 0.7680 -0.9740 6.4081 20 6 1.2619 0.2660 6.1197 21 6 1.4452 0.6315 4.7847 22 16 2.0432 2.1030 4.0287 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.5454 0.4107 -3.3162 29 1 0.3491 -2.2773 3.4267 30 1 0.6246 -1.2626 7.4389 31 1 1.5119 0.9536 6.9142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596918488.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:27 Heat of formation + Delta-G solvation = 62.158462 kcal Electronic energy + Delta-G solvation = -18928.345443 eV Core-core repulsion = 15916.801927 eV Total energy + Delta-G solvation = -3011.543515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54922 -38.88044 -36.97904 -35.26103 -32.35709 -31.89182 -30.15244 -29.51140 -26.31857 -24.76272 -23.74423 -22.46549 -21.81827 -19.76419 -18.12512 -17.31832 -16.91682 -16.46078 -15.48559 -15.06626 -14.93464 -14.42738 -14.30883 -13.90069 -13.84862 -13.08883 -12.80399 -12.54513 -12.37256 -12.09725 -11.49751 -11.29909 -11.19767 -10.95563 -10.58887 -10.47233 -10.39862 -9.94266 -9.61097 -9.30645 -9.14980 -8.70215 -8.58692 -8.12917 -8.04256 -6.83924 -4.05628 0.29628 1.12828 1.45486 2.01525 2.28170 2.97091 3.05783 3.10270 3.74836 3.80260 4.04433 4.13380 4.50415 4.64253 4.74265 4.77233 5.07606 5.26714 5.52062 5.75131 5.83948 6.09992 6.33440 6.53666 6.62100 6.66186 6.94489 7.01461 7.12101 7.64879 7.73576 7.78666 8.04424 8.15967 8.77608 8.96551 9.67948 10.07311 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.005429 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.554665 B = 5156.360113 C = 5820.808623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.108 3.892 3 N -0.369 5.369 4 C -0.288 4.288 5 H 0.118 0.882 6 C 0.042 3.958 7 N -0.805 5.805 8 Si 0.928 3.072 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.262 1.262 12 C 0.459 3.541 13 O -0.592 6.592 14 C 0.114 3.886 15 N -0.454 5.454 16 C 0.049 3.951 17 C 0.167 3.833 18 N -0.477 5.477 19 C 0.073 3.927 20 C -0.114 4.114 21 C -0.178 4.178 22 S 0.117 5.883 23 H 0.030 0.970 24 H 0.101 0.899 25 H 0.036 0.964 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.281 0.719 29 H 0.167 0.833 30 H 0.159 0.841 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -4.614 8.794 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 N -0.082 5.082 4 C -0.420 4.420 5 H 0.135 0.865 6 C -0.170 4.170 7 N -0.438 5.438 8 Si 0.752 3.248 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.186 1.186 12 C 0.248 3.752 13 O -0.480 6.480 14 C -0.166 4.166 15 N -0.173 5.173 16 C -0.079 4.079 17 C -0.004 4.004 18 N -0.186 5.186 19 C -0.078 4.078 20 C -0.139 4.139 21 C -0.305 4.305 22 S 0.373 5.627 23 H 0.049 0.951 24 H 0.120 0.880 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.184 0.816 30 H 0.176 0.824 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.126 -4.205 8.827 9.778 hybrid contribution 0.252 -0.062 -0.645 0.696 sum 0.126 -4.267 8.182 9.228 Atomic orbital electron populations 1.22156 0.95437 1.00159 1.03004 1.21842 0.95907 0.82099 1.01707 1.43935 1.47756 1.11385 1.05115 1.20128 1.28457 1.11995 0.81450 0.86462 1.25609 0.95248 0.96117 1.00012 1.70006 1.15454 1.30411 1.27944 0.85900 0.80055 0.79866 0.79009 1.19560 1.20415 1.18551 1.16447 0.91390 0.86093 0.81282 1.90675 1.57421 1.14941 1.85002 1.27992 0.99027 0.91254 0.98278 1.66515 1.17013 1.11863 1.21867 1.20411 1.02729 0.97476 0.87272 1.22634 0.93245 0.92033 0.92530 1.67378 1.16146 1.34736 1.00371 1.22164 0.97216 0.89711 0.98719 1.20972 1.01113 0.98383 0.93432 1.24433 1.07101 0.99643 0.99303 1.85007 1.64015 1.13223 1.00442 0.95056 0.88044 0.94463 0.91145 0.89755 0.90854 0.81555 0.82368 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.31 37.16 0.35 -2.85 16 2 C 0.11 2.38 4.88 -4.04 -0.02 2.36 16 3 N -0.37 -9.20 2.63 -115.99 -0.30 -9.50 16 4 C -0.29 -7.37 9.23 -15.06 -0.14 -7.51 16 5 H 0.12 3.13 7.48 -52.49 -0.39 2.73 16 6 C 0.04 0.99 4.56 -17.44 -0.08 0.91 16 7 N -0.80 -18.72 9.09 55.51 0.50 -18.22 16 8 Si 0.93 18.03 29.65 -169.99 -5.04 12.99 16 9 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 10 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 11 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 12 C 0.46 11.57 7.57 -12.44 -0.09 11.48 16 13 O -0.59 -16.47 16.57 5.27 0.09 -16.39 16 14 C 0.11 2.47 7.01 -14.86 -0.10 2.36 16 15 N -0.45 -9.06 5.54 -8.57 -0.05 -9.11 16 16 C 0.05 0.86 6.99 -85.22 -0.60 0.26 16 17 C 0.17 2.54 11.30 -16.70 -0.19 2.35 16 18 N -0.48 -6.89 10.28 -12.92 -0.13 -7.02 16 19 C 0.07 0.90 11.12 -17.94 -0.20 0.70 16 20 C -0.11 -1.50 10.09 -39.67 -0.40 -1.90 16 21 C -0.18 -2.95 6.62 -38.19 -0.25 -3.20 16 22 S 0.12 2.12 23.17 -107.50 -2.49 -0.37 16 23 H 0.03 0.68 7.00 -51.93 -0.36 0.32 16 24 H 0.10 2.38 5.55 -51.93 -0.29 2.10 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.58 6.61 -51.93 -0.34 1.24 16 27 H 0.08 1.79 5.34 -51.93 -0.28 1.51 16 28 H 0.28 6.01 8.31 -40.82 -0.34 5.67 16 29 H 0.17 2.19 8.06 -52.49 -0.42 1.76 16 30 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 279.53 15.07 4.21 4.21 Total: -1.00 -27.95 279.53 -7.43 -35.38 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -2.49 Total: 3.06 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.73 Total: 4.97 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.02 Total: -43.86 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.09 Total: -16.39 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.04 Total: 12.99 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.49 Total: -0.37 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.95 -7.43 -35.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596918488.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.539 kcal (2) G-P(sol) polarization free energy of solvation -27.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds