Wall clock time and date at job start Thu Apr 9 2020 13:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46959 * 2 1 4 4 C 1.36631 * 120.00186 * 263.19109 * 3 2 1 5 5 H 1.08001 * 120.00285 * 196.41529 * 4 3 2 6 6 C 1.39201 * 119.99687 * 16.41537 * 4 3 2 7 7 N 1.31261 * 120.00091 * 31.84877 * 6 4 3 8 8 Si 1.86800 * 119.99956 * 211.84150 * 6 4 3 9 9 H 1.48510 * 109.46688 * 90.00085 * 8 6 4 10 10 H 1.48500 * 109.47457 * 210.00394 * 8 6 4 11 11 H 1.48500 * 109.47274 * 330.00734 * 8 6 4 12 12 C 1.34771 * 119.99903 * 83.19582 * 3 2 1 13 13 O 1.21610 * 120.00242 * 184.11987 * 12 3 2 14 14 C 1.47605 * 120.00211 * 4.11913 * 12 3 2 15 15 N 1.29137 * 124.85525 * 353.74908 * 14 12 3 16 16 C 1.33166 * 118.17851 * 179.97438 * 15 14 12 17 17 C 1.41366 * 129.81616 * 179.97438 * 16 15 14 18 18 N 1.31034 * 120.66289 * 179.97438 * 17 16 15 19 19 C 1.32346 * 122.67871 * 0.11509 * 18 17 16 20 20 C 1.36556 * 121.01383 * 359.85126 * 19 18 17 21 21 C 1.39624 * 119.14702 * 0.08758 * 20 19 18 22 22 S 1.75912 * 132.41347 * 179.97438 * 21 20 19 23 23 H 1.09006 * 109.46821 * 299.99866 * 1 2 3 24 24 H 1.09005 * 109.47160 * 59.99746 * 1 2 3 25 25 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46696 * 240.00441 * 2 1 3 27 27 H 1.08992 * 109.47065 * 120.00551 * 2 1 3 28 28 H 0.97003 * 120.00364 * 179.97438 * 7 6 4 29 29 H 1.07989 * 119.67126 * 0.02562 * 17 16 15 30 30 H 1.08005 * 119.49750 * 179.97438 * 19 18 17 31 31 H 1.07998 * 120.42890 * 180.36449 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3783 1.9786 -1.1749 5 1 2.9768 2.8775 -1.1625 6 6 1.9735 1.4286 -2.3879 7 7 0.8277 0.7937 -2.4708 8 14 3.0610 1.5942 -3.8977 9 1 3.9903 0.4379 -3.9674 10 1 2.2141 1.6229 -5.1171 11 1 3.8434 2.8532 -3.8086 12 6 2.1125 2.0626 1.1589 13 8 2.4461 3.2321 1.1514 14 6 1.8109 1.3896 2.4375 15 7 1.3401 0.1922 2.5481 16 6 1.1170 -0.2854 3.7710 17 6 0.6133 -1.5434 4.1736 18 7 0.4646 -1.8283 5.4439 19 6 0.7680 -0.9740 6.4081 20 6 1.2619 0.2660 6.1197 21 6 1.4452 0.6315 4.7847 22 16 2.0432 2.1030 4.0287 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 0.5454 0.4107 -3.3162 29 1 0.3491 -2.2773 3.4267 30 1 0.6246 -1.2626 7.4389 31 1 1.5119 0.9536 6.9142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596918488.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:26 Heat of formation + Delta-G solvation = 44.956652 kcal Electronic energy + Delta-G solvation = -18929.091369 eV Core-core repulsion = 15916.801927 eV Total energy + Delta-G solvation = -3012.289442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.063 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.90548 -40.58530 -38.44716 -37.14126 -34.09500 -33.11588 -31.57278 -31.23190 -27.96370 -26.30776 -25.09061 -24.14503 -23.26602 -21.37471 -19.50783 -19.04628 -18.50967 -17.82886 -17.02641 -16.68360 -16.45224 -16.04522 -15.61116 -15.47579 -15.17469 -14.81028 -14.56391 -14.07681 -13.68373 -13.54837 -13.22663 -12.87204 -12.74584 -12.60402 -12.23223 -12.12359 -11.82808 -11.51376 -11.12700 -11.02222 -10.66477 -10.39046 -10.11284 -9.85108 -9.39593 -8.55638 -5.97977 -1.08027 -0.07665 -0.00318 0.55466 0.86868 1.40811 1.45588 1.56693 2.11034 2.21018 2.57989 2.71114 2.92618 3.06017 3.38231 3.53275 3.78127 3.94193 4.31191 4.51500 4.64156 4.70622 4.79571 4.89564 4.96594 5.21392 5.25303 5.34290 5.42259 5.85969 5.91734 6.25893 6.40802 6.84526 6.95996 7.17136 7.82577 8.37153 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.005429 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.554665 B = 5156.360113 C = 5820.808623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.117 3.883 3 N -0.383 5.383 4 C -0.351 4.351 5 H 0.087 0.913 6 C 0.022 3.978 7 N -0.827 5.827 8 Si 0.992 3.008 9 H -0.262 1.262 10 H -0.267 1.267 11 H -0.271 1.271 12 C 0.450 3.550 13 O -0.633 6.633 14 C 0.077 3.923 15 N -0.440 5.440 16 C 0.006 3.994 17 C 0.180 3.820 18 N -0.484 5.484 19 C 0.100 3.900 20 C -0.115 4.115 21 C -0.172 4.172 22 S 0.141 5.859 23 H 0.019 0.981 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.288 0.712 29 H 0.185 0.815 30 H 0.208 0.792 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 -6.789 11.846 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.006 4.006 3 N -0.096 5.096 4 C -0.481 4.481 5 H 0.105 0.895 6 C -0.189 4.189 7 N -0.460 5.460 8 Si 0.813 3.187 9 H -0.187 1.187 10 H -0.192 1.192 11 H -0.196 1.196 12 C 0.239 3.761 13 O -0.524 6.524 14 C -0.204 4.204 15 N -0.158 5.158 16 C -0.120 4.120 17 C 0.009 3.991 18 N -0.194 5.194 19 C -0.050 4.050 20 C -0.140 4.140 21 C -0.298 4.298 22 S 0.397 5.603 23 H 0.038 0.962 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.202 0.798 30 H 0.224 0.776 31 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.754 -6.422 11.851 13.501 hybrid contribution 0.321 0.442 -0.989 1.130 sum -0.433 -5.980 10.863 12.408 Atomic orbital electron populations 1.21989 0.94903 1.01150 1.01288 1.21819 0.96170 0.81067 1.01517 1.44015 1.48545 1.12122 1.04931 1.19914 1.31893 1.13361 0.82941 0.89489 1.26265 0.95792 0.95256 1.01558 1.70040 1.15871 1.31105 1.28934 0.84985 0.78365 0.79411 0.75926 1.18659 1.19177 1.19589 1.16942 0.90598 0.85963 0.82628 1.90601 1.58745 1.16799 1.86226 1.27326 1.01818 0.92696 0.98599 1.66369 1.14397 1.11111 1.23928 1.20660 1.05601 0.99096 0.86665 1.22983 0.91442 0.91129 0.93497 1.67558 1.16367 1.35240 1.00186 1.23059 0.93171 0.88453 1.00360 1.21481 1.00433 0.99480 0.92560 1.24753 1.05982 0.98340 1.00747 1.84820 1.63582 1.13786 0.98103 0.96180 0.90148 0.91965 0.91983 0.88930 0.90148 0.79817 0.77553 0.80951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.89 9.31 71.98 0.67 -5.22 16 2 C 0.12 5.35 4.88 86.38 0.42 5.78 16 3 N -0.38 -20.28 2.63 -639.15 -1.68 -21.96 16 4 C -0.35 -19.32 9.23 84.18 0.78 -18.54 16 5 H 0.09 5.13 7.48 -2.91 -0.02 5.10 16 6 C 0.02 1.06 4.56 85.01 0.39 1.45 16 7 N -0.83 -39.82 9.09 21.70 0.20 -39.62 16 8 Si 0.99 38.42 29.65 68.60 2.03 40.46 16 9 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 10 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 12 C 0.45 24.00 7.57 86.72 0.66 24.65 16 13 O -0.63 -37.60 16.57 -4.06 -0.07 -37.67 16 14 C 0.08 3.39 7.01 87.56 0.61 4.00 16 15 N -0.44 -17.40 5.54 -181.04 -1.00 -18.40 16 16 C 0.01 0.18 6.99 40.28 0.28 0.46 16 17 C 0.18 4.86 11.30 85.58 0.97 5.83 16 18 N -0.48 -11.55 10.28 -194.78 -2.00 -13.55 16 19 C 0.10 1.86 11.12 84.22 0.94 2.79 16 20 C -0.11 -2.39 10.09 22.21 0.22 -2.17 16 21 C -0.17 -5.16 6.62 23.17 0.15 -5.00 16 22 S 0.14 5.00 23.17 -56.49 -1.31 3.69 16 23 H 0.02 0.87 7.00 -2.38 -0.02 0.86 16 24 H 0.08 3.90 5.55 -2.38 -0.01 3.89 16 25 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 2.89 6.61 -2.39 -0.02 2.88 16 27 H 0.09 4.00 5.34 -2.39 -0.01 3.99 16 28 H 0.29 12.57 8.31 -92.71 -0.77 11.80 16 29 H 0.18 4.22 8.06 -2.92 -0.02 4.20 16 30 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -65.33 279.53 3.44 -61.89 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.18 Total: 11.14 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 6.09 Total: 14.03 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -4.49 Total: -93.54 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.07 Total: -37.67 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.31 Total: 3.69 kcal Total: -65.33 3.44 -61.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596918488.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.847 kcal (2) G-P(sol) polarization free energy of solvation -65.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds