Wall clock time and date at job start Thu Apr 9 2020 13:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 O 1.21297 * 119.99667 * 119.99961 * 4 2 1 6 6 N 1.34773 * 120.00081 * 299.72691 * 4 2 1 7 7 C 1.37095 * 119.99878 * 180.02562 * 6 4 2 8 8 H 1.08004 * 120.00160 * 359.97438 * 7 6 4 9 9 C 1.38950 * 120.00380 * 179.97438 * 7 6 4 10 10 N 1.31412 * 119.99401 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00554 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46681 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47048 * 120.00010 * 11 9 7 14 14 H 1.48501 * 109.47100 * 240.00460 * 11 9 7 15 15 N 1.46493 * 109.47438 * 239.99415 * 2 1 3 16 16 C 1.34954 * 126.03719 * 325.00583 * 15 2 1 17 17 C 1.35317 * 107.74735 * 179.97438 * 16 15 2 18 18 C 1.39872 * 107.91816 * 359.97438 * 17 16 15 19 19 C 1.50696 * 125.89503 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.47193 * 90.00134 * 19 18 17 21 21 F 1.39905 * 109.47038 * 210.00335 * 19 18 17 22 22 F 1.39901 * 109.47269 * 330.00099 * 19 18 17 23 23 N 1.30834 * 108.20415 * 359.74263 * 18 17 16 24 24 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 25 25 H 1.09002 * 109.47051 * 59.99923 * 1 2 3 26 26 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 27 27 H 0.96998 * 120.00525 * 359.97438 * 6 4 2 28 28 H 0.97004 * 120.00112 * 179.97438 * 10 9 7 29 29 H 1.08001 * 126.12220 * 359.95457 * 16 15 2 30 30 H 1.08001 * 126.04015 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7295 -1.6966 1.1194 6 7 1.7111 -0.2466 2.4546 7 6 2.1685 -0.8925 3.5740 8 1 2.7857 -1.7732 3.4751 9 6 1.8380 -0.4141 4.8360 10 7 1.0873 0.6578 4.9565 11 14 2.4605 -1.2946 6.3614 12 1 3.2800 -2.4652 5.9573 13 1 3.2914 -0.3633 7.1660 14 1 1.3054 -1.7550 7.1733 15 7 2.0184 -0.6907 -1.1960 16 6 1.4402 -1.7560 -1.7893 17 6 2.1962 -2.0925 -2.8600 18 6 3.2729 -1.2020 -2.9235 19 6 4.3663 -1.2102 -3.9605 20 9 3.9909 -0.4038 -5.0403 21 9 5.5472 -0.7150 -3.3969 22 9 4.5759 -2.5194 -4.4069 23 7 3.1641 -0.3577 -1.9300 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.1571 0.5446 2.5436 28 1 0.8562 0.9916 5.8374 29 1 0.5362 -2.2514 -1.4671 30 1 2.0020 -2.9046 -3.5450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601026333.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:49 Heat of formation + Delta-G solvation = -107.949903 kcal Electronic energy + Delta-G solvation = -21244.032648 eV Core-core repulsion = 17240.503069 eV Total energy + Delta-G solvation = -4003.529579 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.07217 -47.61752 -47.55149 -41.33761 -38.51001 -34.54641 -34.03968 -31.56276 -30.42593 -29.90827 -26.36598 -25.55293 -23.82125 -21.28296 -20.96399 -19.41785 -18.46607 -18.32887 -18.08210 -17.66014 -16.56480 -16.32731 -14.93369 -14.56011 -14.44486 -14.38814 -14.09678 -14.00626 -13.93495 -13.73904 -13.71719 -13.62183 -13.24870 -12.98160 -12.57901 -12.09008 -12.02782 -11.71506 -11.49124 -11.18941 -10.84214 -10.47153 -10.40037 -9.74332 -9.70967 -8.93154 -8.38030 -8.20248 -6.61588 -4.03404 1.74301 2.09445 2.49526 2.90224 3.03362 3.17779 3.24878 3.55392 3.76975 4.01536 4.06507 4.46699 4.55835 4.74010 4.86430 5.04523 5.14200 5.39199 5.53046 5.57860 5.68717 5.82463 5.92190 6.09363 6.33879 6.97344 7.37681 7.51362 7.81365 8.34161 8.95619 9.25650 9.74491 10.55133 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.032209 B = 0.004050 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.113543 B = 6911.762039 C = 7285.151729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 H 0.119 0.881 4 C 0.422 3.578 5 O -0.578 6.578 6 N -0.546 5.546 7 C -0.304 4.304 8 H 0.106 0.894 9 C 0.028 3.972 10 N -0.895 5.895 11 Si 0.932 3.068 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.279 1.279 15 N -0.314 5.314 16 C 0.083 3.917 17 C -0.242 4.242 18 C -0.030 4.030 19 C 0.559 3.441 20 F -0.173 7.173 21 F -0.169 7.169 22 F -0.168 7.168 23 N -0.232 5.232 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.394 0.606 28 H 0.275 0.725 29 H 0.182 0.818 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -0.820 -13.725 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.137 0.863 4 C 0.206 3.794 5 O -0.462 6.462 6 N -0.182 5.182 7 C -0.433 4.433 8 H 0.124 0.876 9 C -0.175 4.175 10 N -0.535 5.535 11 Si 0.759 3.241 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.205 1.205 15 N -0.096 5.096 16 C -0.064 4.064 17 C -0.271 4.271 18 C -0.196 4.196 19 C 0.503 3.497 20 F -0.155 7.155 21 F -0.150 7.150 22 F -0.150 7.150 23 N -0.056 5.056 24 H 0.112 0.888 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.228 0.772 28 H 0.084 0.916 29 H 0.199 0.801 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.638 -0.303 -12.922 13.029 hybrid contribution -0.236 -0.584 0.455 0.777 sum -1.874 -0.886 -12.466 12.638 Atomic orbital electron populations 1.22169 0.91058 1.04112 1.04283 1.21350 0.95654 0.97554 0.81914 0.86307 1.19703 0.87331 0.88237 0.84152 1.90607 1.41721 1.28123 1.85749 1.41785 1.45339 1.27155 1.03879 1.19786 1.29837 1.10907 0.82771 0.87642 1.25309 0.96481 0.96305 0.99413 1.69604 1.36155 1.22297 1.25442 0.85751 0.78606 0.79343 0.80413 1.19091 1.20505 1.20511 1.48330 1.17364 1.23324 1.20536 1.22480 1.00011 0.90383 0.93507 1.21047 0.97028 1.05264 1.03790 1.21853 0.98709 1.00704 0.98342 1.16876 0.79941 0.73695 0.79223 1.93217 1.91333 1.73671 1.57239 1.93236 1.49322 1.87583 1.84849 1.93202 1.95155 1.36671 1.89928 1.77283 1.02131 1.21743 1.04475 0.88776 0.91035 0.90986 0.77173 0.91551 0.80141 0.82540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.73 37.16 0.32 -1.63 16 2 C 0.14 2.36 3.73 -69.08 -0.26 2.10 16 3 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 4 C 0.42 9.46 7.17 -10.98 -0.08 9.38 16 5 O -0.58 -15.49 15.99 5.54 0.09 -15.40 16 6 N -0.55 -12.86 5.18 -10.96 -0.06 -12.92 16 7 C -0.30 -8.05 9.68 -14.93 -0.14 -8.19 16 8 H 0.11 2.98 7.16 -52.48 -0.38 2.61 16 9 C 0.03 0.71 5.50 -17.47 -0.10 0.61 16 10 N -0.89 -22.86 13.05 55.50 0.72 -22.14 16 11 Si 0.93 20.13 29.55 -169.99 -5.02 15.11 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 15 N -0.31 -5.46 3.02 -55.99 -0.17 -5.63 16 16 C 0.08 1.22 10.57 -17.22 -0.18 1.04 16 17 C -0.24 -3.48 10.42 -40.01 -0.42 -3.89 16 18 C -0.03 -0.50 6.56 -82.41 -0.54 -1.04 16 19 C 0.56 8.20 3.55 36.00 0.13 8.33 16 20 F -0.17 -2.37 17.30 2.25 0.04 -2.33 16 21 F -0.17 -2.68 17.25 2.25 0.04 -2.64 16 22 F -0.17 -2.28 17.04 2.25 0.04 -2.24 16 23 N -0.23 -4.35 12.51 33.67 0.42 -3.93 16 24 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.86 7.16 -51.93 -0.37 0.49 16 27 H 0.39 8.64 7.33 -40.82 -0.30 8.34 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.29 16 29 H 0.18 2.05 7.26 -52.49 -0.38 1.66 16 30 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 287.28 15.07 4.33 4.33 Total: -1.00 -31.35 287.28 -3.06 -34.41 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -2.22 Total: 6.69 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.26 Total: 6.70 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.92 Total: -44.62 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.09 Total: -15.40 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.12 Total: -7.22 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.35 -3.06 -34.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601026333.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.542 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds