Wall clock time and date at job start Thu Apr 9 2020 13:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86803 * 119.99755 * 2 1 4 4 H 1.48500 * 109.46921 * 240.00230 * 3 2 1 5 5 H 1.48496 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47376 * 120.00239 * 3 2 1 7 7 C 1.40044 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00240 * 0.02562 * 7 2 1 10 10 O 1.21687 * 119.99673 * 359.97438 * 9 7 2 11 11 N 1.34769 * 120.00398 * 179.97438 * 9 7 2 12 12 C 1.46500 * 120.00241 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46998 * 180.02562 * 12 11 9 14 14 N 1.46500 * 109.46998 * 180.02562 * 13 12 11 15 15 C 1.34940 * 126.04003 * 124.71583 * 14 13 12 16 16 C 1.35320 * 107.74879 * 179.84078 * 15 14 13 17 17 C 1.39863 * 107.91673 * 0.42445 * 16 15 14 18 18 C 1.50707 * 125.89550 * 179.71920 * 17 16 15 19 19 F 1.39908 * 109.46997 * 184.99906 * 18 17 16 20 20 F 1.39895 * 109.47098 * 304.99658 * 18 17 16 21 21 F 1.39895 * 109.47327 * 64.99975 * 18 17 16 22 22 N 1.30838 * 108.20413 * 359.73663 * 17 16 15 23 23 H 0.96992 * 120.00053 * 359.97438 * 1 2 3 24 24 H 0.97010 * 119.99849 * 0.02562 * 11 9 7 25 25 H 1.09000 * 109.47175 * 60.00333 * 12 11 9 26 26 H 1.09001 * 109.47297 * 299.99840 * 12 11 9 27 27 H 1.08993 * 109.46955 * 300.00226 * 13 12 11 28 28 H 1.09000 * 109.47050 * 60.00054 * 13 12 11 29 29 H 1.08005 * 126.12627 * 359.97438 * 15 14 13 30 30 H 1.08002 * 126.03873 * 180.16348 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2128 0.0001 9 6 1.2753 -2.4805 0.0005 10 8 0.0584 -2.4805 0.0005 11 7 1.9491 -3.6476 0.0005 12 6 1.2167 -4.9164 0.0011 13 6 2.2110 -6.0793 0.0016 14 7 1.4786 -7.3480 0.0016 15 6 1.6201 -8.3464 -0.8951 16 6 0.7707 -9.3396 -0.5441 17 6 0.0797 -8.9302 0.6009 18 6 -0.9715 -9.7264 1.3305 19 9 -1.5164 -8.9484 2.3578 20 9 -1.9831 -10.0928 0.4364 21 9 -0.3909 -10.8770 1.8747 22 7 0.5031 -7.7365 0.9289 23 1 -0.4850 0.8400 0.0004 24 1 2.9192 -3.6476 0.0009 25 1 0.5897 -4.9744 -0.8886 26 1 0.5903 -4.9740 0.8914 27 1 2.8376 -6.0219 -0.8883 28 1 2.8377 -6.0211 0.8916 29 1 2.2926 -8.3527 -1.7402 30 1 0.6453 -10.2803 -1.0597 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602220501.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:53 Heat of formation + Delta-G solvation = -109.585110 kcal Electronic energy + Delta-G solvation = -20545.004341 eV Core-core repulsion = 16541.403854 eV Total energy + Delta-G solvation = -4003.600487 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.22763 -47.77346 -47.70272 -41.58238 -37.52456 -34.93768 -32.85196 -32.22953 -30.61617 -29.01873 -26.84875 -25.61019 -22.86679 -21.65085 -20.82636 -19.86089 -18.63161 -18.36404 -18.12271 -17.43130 -16.41325 -15.60874 -15.27782 -14.83933 -14.65078 -14.58160 -14.15575 -14.14528 -14.03790 -13.86857 -13.86031 -13.83543 -13.47441 -12.53998 -12.48739 -12.30995 -11.83138 -11.35472 -11.22405 -11.06691 -10.82039 -10.54628 -10.32112 -9.88357 -8.99695 -8.91192 -7.73877 -7.70731 -6.25823 -4.72822 1.42559 1.82380 2.15223 2.68754 3.11615 3.16770 3.18702 3.53762 3.84074 4.05066 4.28055 4.42097 4.51082 4.59042 4.80902 5.00049 5.16079 5.19587 5.29517 5.48486 5.69051 5.98192 6.22830 6.33624 6.66474 7.16814 7.36120 7.76456 7.90371 8.20924 8.94568 9.38135 10.51166 10.68907 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.037285 B = 0.003200 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.795991 B = 8747.836743 C = 9176.169296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.554 3.446 10 O -0.576 6.576 11 N -0.767 5.767 12 C 0.122 3.878 13 C 0.119 3.881 14 N -0.341 5.341 15 C 0.065 3.935 16 C -0.236 4.236 17 C -0.028 4.028 18 C 0.557 3.443 19 F -0.166 7.166 20 F -0.168 7.168 21 F -0.170 7.170 22 N -0.225 5.225 23 H 0.270 0.730 24 H 0.381 0.619 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.188 0.812 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 -18.413 -1.511 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.458 6.458 11 N -0.424 5.424 12 C -0.004 4.004 13 C -0.002 4.002 14 N -0.124 5.124 15 C -0.081 4.081 16 C -0.266 4.266 17 C -0.195 4.195 18 C 0.501 3.499 19 F -0.147 7.147 20 F -0.149 7.149 21 F -0.152 7.152 22 N -0.050 5.050 23 H 0.081 0.919 24 H 0.213 0.787 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.205 0.795 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.023 -17.216 -0.677 17.693 hybrid contribution 0.898 -0.004 -0.537 1.046 sum 4.921 -17.221 -1.214 17.951 Atomic orbital electron populations 1.70005 1.07106 1.27586 1.34766 1.25723 0.94651 1.00381 0.92598 0.86389 0.79778 0.80878 0.79443 1.19265 1.20504 1.19231 1.20810 0.93558 0.89153 1.54675 0.91320 1.18257 0.87256 0.82170 0.76459 1.90627 1.14086 1.86517 1.54607 1.46099 1.08516 1.04317 1.83515 1.21044 0.93694 0.83084 1.02565 1.22219 0.93993 0.79182 1.04800 1.48789 1.29219 1.14750 1.19660 1.22702 1.01036 0.88176 0.96168 1.21150 1.02648 1.03015 0.99742 1.21999 1.01736 0.95879 0.99858 1.16881 0.79390 0.77094 0.76578 1.93256 1.86701 1.74536 1.60193 1.93229 1.61670 1.91945 1.68091 1.93222 1.84348 1.51260 1.86343 1.77465 1.03428 1.11449 1.12656 0.91891 0.78749 0.92679 0.91626 0.87491 0.88595 0.79550 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.84 11.83 55.55 0.66 -22.18 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.29 16 3 Si 0.91 19.71 29.56 -169.99 -5.02 14.68 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.55 -14.99 9.54 -35.63 -0.34 -15.33 16 8 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 9 C 0.55 15.46 7.75 -12.99 -0.10 15.35 16 10 O -0.58 -18.70 15.02 5.20 0.08 -18.63 16 11 N -0.77 -16.03 5.55 -61.72 -0.34 -16.38 16 12 C 0.12 2.23 5.86 -4.04 -0.02 2.21 16 13 C 0.12 1.44 6.62 -4.04 -0.03 1.42 16 14 N -0.34 -4.42 3.68 -61.36 -0.23 -4.65 16 15 C 0.07 0.64 11.45 -17.23 -0.20 0.44 16 16 C -0.24 -2.51 10.73 -40.01 -0.43 -2.94 16 17 C -0.03 -0.38 6.51 -82.40 -0.54 -0.92 16 18 C 0.56 7.09 3.51 36.01 0.13 7.21 16 19 F -0.17 -2.38 17.14 2.25 0.04 -2.34 16 20 F -0.17 -2.05 17.30 2.25 0.04 -2.02 16 21 F -0.17 -2.00 17.30 2.25 0.04 -1.96 16 22 N -0.23 -3.53 12.19 33.67 0.41 -3.12 16 23 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 24 H 0.38 6.53 8.45 -40.82 -0.35 6.19 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.11 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.19 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 291.55 15.07 4.39 4.39 Total: -1.00 -35.80 291.55 -3.98 -39.78 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -2.42 Total: 2.68 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -1.62 Total: 9.73 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.50 Total: -46.33 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.08 Total: -18.63 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.12 Total: -6.32 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.80 -3.98 -39.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602220501.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.801 kcal (2) G-P(sol) polarization free energy of solvation -35.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds