Wall clock time and date at job start Thu Apr 9 2020 13:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86803 * 119.99755 * 2 1 4 4 H 1.48500 * 109.46921 * 240.00230 * 3 2 1 5 5 H 1.48496 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47376 * 120.00239 * 3 2 1 7 7 C 1.40044 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00240 * 0.02562 * 7 2 1 10 10 O 1.21687 * 119.99673 * 359.97438 * 9 7 2 11 11 N 1.34769 * 120.00398 * 179.97438 * 9 7 2 12 12 C 1.46500 * 120.00241 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46998 * 180.02562 * 12 11 9 14 14 N 1.46500 * 109.46998 * 180.02562 * 13 12 11 15 15 C 1.34940 * 126.04003 * 124.71583 * 14 13 12 16 16 C 1.35320 * 107.74879 * 179.84078 * 15 14 13 17 17 C 1.39863 * 107.91673 * 0.42445 * 16 15 14 18 18 C 1.50707 * 125.89550 * 179.71920 * 17 16 15 19 19 F 1.39908 * 109.46997 * 184.99906 * 18 17 16 20 20 F 1.39895 * 109.47098 * 304.99658 * 18 17 16 21 21 F 1.39895 * 109.47327 * 64.99975 * 18 17 16 22 22 N 1.30838 * 108.20413 * 359.73663 * 17 16 15 23 23 H 0.96992 * 120.00053 * 359.97438 * 1 2 3 24 24 H 0.97010 * 119.99849 * 0.02562 * 11 9 7 25 25 H 1.09000 * 109.47175 * 60.00333 * 12 11 9 26 26 H 1.09001 * 109.47297 * 299.99840 * 12 11 9 27 27 H 1.08993 * 109.46955 * 300.00226 * 13 12 11 28 28 H 1.09000 * 109.47050 * 60.00054 * 13 12 11 29 29 H 1.08005 * 126.12627 * 359.97438 * 15 14 13 30 30 H 1.08002 * 126.03873 * 180.16348 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2128 0.0001 9 6 1.2753 -2.4805 0.0005 10 8 0.0584 -2.4805 0.0005 11 7 1.9491 -3.6476 0.0005 12 6 1.2167 -4.9164 0.0011 13 6 2.2110 -6.0793 0.0016 14 7 1.4786 -7.3480 0.0016 15 6 1.6201 -8.3464 -0.8951 16 6 0.7707 -9.3396 -0.5441 17 6 0.0797 -8.9302 0.6009 18 6 -0.9715 -9.7264 1.3305 19 9 -1.5164 -8.9484 2.3578 20 9 -1.9831 -10.0928 0.4364 21 9 -0.3909 -10.8770 1.8747 22 7 0.5031 -7.7365 0.9289 23 1 -0.4850 0.8400 0.0004 24 1 2.9192 -3.6476 0.0009 25 1 0.5897 -4.9744 -0.8886 26 1 0.5903 -4.9740 0.8914 27 1 2.8376 -6.0219 -0.8883 28 1 2.8377 -6.0211 0.8916 29 1 2.2926 -8.3527 -1.7402 30 1 0.6453 -10.2803 -1.0597 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602220501.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:52 Heat of formation + Delta-G solvation = -137.005871 kcal Electronic energy + Delta-G solvation = -20546.193394 eV Core-core repulsion = 16541.403854 eV Total energy + Delta-G solvation = -4004.789540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.24643 -48.76708 -48.75597 -42.49306 -39.50359 -36.41253 -34.69153 -33.96454 -31.59270 -30.32216 -28.51889 -27.05038 -24.17486 -22.53487 -21.88673 -21.79175 -19.63826 -19.47843 -19.26813 -18.99788 -17.68337 -17.27197 -16.68440 -16.25105 -15.83441 -15.76050 -15.61514 -15.44699 -15.17733 -14.90997 -14.89734 -14.79676 -14.54260 -14.31810 -14.09975 -13.37186 -13.19810 -13.06985 -12.82139 -12.64585 -12.56159 -12.06805 -11.96131 -10.93335 -10.86756 -9.98573 -9.85924 -9.62618 -8.31651 -6.89033 0.48171 0.88571 1.33990 1.41368 1.44665 1.56926 1.71493 2.24242 2.44234 2.54612 2.85933 3.12187 3.28952 3.53140 3.60008 3.79814 3.89705 4.16837 4.26194 4.54240 4.66638 4.73052 4.83772 5.15711 5.30433 5.81047 5.84756 6.10648 6.21756 6.25398 6.84224 7.49163 8.44596 8.64252 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.037285 B = 0.003200 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.795991 B = 8747.836743 C = 9176.169296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.025 3.975 3 Si 1.002 2.998 4 H -0.250 1.250 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.570 4.570 8 H 0.096 0.904 9 C 0.535 3.465 10 O -0.636 6.636 11 N -0.748 5.748 12 C 0.129 3.871 13 C 0.134 3.866 14 N -0.352 5.352 15 C 0.083 3.917 16 C -0.241 4.241 17 C -0.041 4.041 18 C 0.559 3.441 19 F -0.181 7.181 20 F -0.165 7.165 21 F -0.164 7.164 22 N -0.288 5.288 23 H 0.274 0.726 24 H 0.404 0.596 25 H 0.032 0.968 26 H 0.025 0.975 27 H 0.155 0.845 28 H 0.110 0.890 29 H 0.239 0.761 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.257 -18.789 -2.799 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.174 1.174 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.606 4.606 8 H 0.114 0.886 9 C 0.340 3.660 10 O -0.523 6.523 11 N -0.405 5.405 12 C 0.003 3.997 13 C 0.014 3.986 14 N -0.136 5.136 15 C -0.062 4.062 16 C -0.270 4.270 17 C -0.206 4.206 18 C 0.502 3.498 19 F -0.162 7.162 20 F -0.147 7.147 21 F -0.145 7.145 22 N -0.113 5.113 23 H 0.084 0.916 24 H 0.239 0.761 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.173 0.827 28 H 0.128 0.872 29 H 0.255 0.745 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.161 -17.659 -1.960 19.157 hybrid contribution -0.080 -0.008 -0.156 0.176 sum 7.082 -17.667 -2.117 19.151 Atomic orbital electron populations 1.70200 1.09763 1.29121 1.36316 1.27061 0.95500 1.05263 0.91139 0.85009 0.78087 0.74361 0.80454 1.17417 1.20332 1.17721 1.21421 0.95032 0.89597 1.54566 0.88570 1.18710 0.86815 0.84414 0.76105 1.90582 1.16652 1.87865 1.57195 1.45573 1.09571 1.03784 1.81599 1.20948 0.94795 0.84383 0.99579 1.22140 0.92062 0.76527 1.07886 1.48837 1.29184 1.15435 1.20097 1.23572 1.00433 0.86323 0.95868 1.21620 1.02103 1.04502 0.98784 1.22260 1.01838 0.95625 1.00886 1.16897 0.79431 0.77150 0.76288 1.93222 1.86973 1.75058 1.60941 1.93228 1.61635 1.91904 1.67916 1.93228 1.84205 1.50812 1.86271 1.77403 1.05753 1.12977 1.15141 0.91566 0.76128 0.94925 0.95612 0.82724 0.87181 0.74488 0.79461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.63 11.83 21.84 0.26 -50.37 16 2 C 0.03 1.39 5.50 85.30 0.47 1.86 16 3 Si 1.00 39.84 29.56 68.60 2.03 41.87 16 4 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 5 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 7 C -0.57 -31.26 9.54 24.83 0.24 -31.02 16 8 H 0.10 4.56 7.85 -2.91 -0.02 4.53 16 9 C 0.53 30.53 7.75 86.36 0.67 31.20 16 10 O -0.64 -43.30 15.02 -4.31 -0.06 -43.36 16 11 N -0.75 -31.14 5.55 -467.41 -2.59 -33.74 16 12 C 0.13 4.78 5.86 86.38 0.51 5.29 16 13 C 0.13 2.94 6.62 86.38 0.57 3.51 16 14 N -0.35 -8.47 3.68 -348.06 -1.28 -9.75 16 15 C 0.08 1.33 11.45 83.54 0.96 2.28 16 16 C -0.24 -4.49 10.73 21.99 0.24 -4.26 16 17 C -0.04 -1.08 6.51 43.10 0.28 -0.80 16 18 C 0.56 14.29 3.51 71.24 0.25 14.54 16 19 F -0.18 -5.43 17.14 44.97 0.77 -4.65 16 20 F -0.17 -4.02 17.30 44.97 0.78 -3.24 16 21 F -0.16 -3.77 17.30 44.97 0.78 -2.99 16 22 N -0.29 -9.08 12.19 -47.38 -0.58 -9.66 16 23 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 24 H 0.40 13.04 8.45 -92.70 -0.78 12.25 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 26 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.16 1.95 8.07 -2.39 -0.02 1.93 16 28 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.24 1.11 8.06 -2.91 -0.02 1.08 16 30 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -84.18 291.55 4.69 -79.49 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.42 Total: 13.80 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 4.18 Total: 22.61 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -4.19 Total: -103.52 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.06 Total: -43.36 kcal Atomic # 9 Polarization: -13.21 SS G_CDS: 2.33 Total: -10.89 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -84.18 4.69 -79.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602220501.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.519 kcal (2) G-P(sol) polarization free energy of solvation -84.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds