Wall clock time and date at job start Thu Apr 9 2020 13:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38163 * 120.83765 * 2 1 4 4 N 1.32538 * 119.19110 * 180.02562 * 3 2 1 5 5 C 1.31816 * 121.01701 * 0.02562 * 4 3 2 6 6 N 1.31711 * 121.83610 * 359.71464 * 5 4 3 7 7 C 1.33027 * 120.68984 * 0.57374 * 6 5 4 8 8 S 1.76203 * 120.53116 * 179.71622 * 7 6 5 9 9 C 1.76197 * 100.00059 * 359.72260 * 8 7 6 10 10 N 1.32312 * 126.25486 * 0.02792 * 9 8 7 11 11 N 1.28513 * 110.20757 * 179.97438 * 10 9 8 12 12 C 1.33115 * 109.73573 * 0.02562 * 11 10 9 13 13 C 1.39779 * 126.57091 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00223 * 186.21156 * 13 12 11 15 15 C 1.40089 * 120.00029 * 6.20859 * 13 12 11 16 16 N 1.30806 * 119.99690 * 6.45000 * 15 13 12 17 17 Si 1.86792 * 120.00172 * 186.17093 * 15 13 12 18 18 H 1.48502 * 109.47141 * 265.29106 * 17 15 13 19 19 H 1.48503 * 109.47232 * 25.29007 * 17 15 13 20 20 H 1.48506 * 109.47145 * 145.29098 * 17 15 13 21 21 N 1.36673 * 126.25393 * 180.34272 * 9 8 7 22 22 C 1.46498 * 127.14790 * 0.02562 * 21 9 8 23 23 H 1.08994 * 109.47359 * 269.97819 * 1 2 3 24 24 H 1.09001 * 109.46721 * 29.97467 * 1 2 3 25 25 H 1.08999 * 109.47720 * 149.97581 * 1 2 3 26 26 H 1.07997 * 120.40474 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.07596 * 180.02562 * 5 4 3 28 28 H 0.97004 * 120.00347 * 179.72215 * 16 15 13 29 29 H 1.08996 * 109.47869 * 270.16084 * 22 21 9 30 30 H 1.09000 * 109.47241 * 30.16458 * 22 21 9 31 31 H 1.09007 * 109.47234 * 150.15925 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2152 1.1863 0.0000 4 7 3.5400 1.1482 -0.0005 5 6 4.1865 -0.0005 -0.0015 6 7 3.5522 -1.1548 0.0035 7 6 2.2226 -1.1988 -0.0016 8 16 1.3783 -2.7454 -0.0024 9 6 2.7546 -3.8455 -0.0036 10 7 4.0320 -3.5005 -0.0033 11 7 4.7750 -4.5491 -0.0039 12 6 4.0125 -5.6403 -0.0052 13 6 4.4557 -6.9659 -0.0057 14 1 3.7451 -7.7728 -0.1080 15 6 5.8215 -7.2480 0.1264 16 7 6.6675 -6.2821 0.3764 17 14 6.4336 -9.0043 -0.0465 18 1 6.5305 -9.6293 1.2971 19 1 5.4842 -9.7790 -0.8855 20 1 7.7726 -9.0008 -0.6887 21 7 2.6979 -5.2110 -0.0111 22 6 1.4945 -6.0464 -0.0202 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6956 2.1331 -0.0004 27 1 5.2665 0.0050 -0.0015 28 1 7.6128 -6.4779 0.4719 29 1 1.1903 -6.2567 1.0051 30 1 0.6913 -5.5210 -0.5368 31 1 1.7063 -6.9832 -0.5358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603364527.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:57 Heat of formation + Delta-G solvation = 129.426615 kcal Electronic energy + Delta-G solvation = -18443.234695 eV Core-core repulsion = 15466.900897 eV Total energy + Delta-G solvation = -2976.333798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.069 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51609 -40.47439 -33.74986 -33.65985 -33.43674 -33.14650 -29.31091 -27.55306 -26.48788 -25.52173 -24.50552 -22.59846 -20.85836 -20.49406 -18.09424 -17.45511 -17.26155 -15.71267 -15.35619 -14.92872 -14.58817 -14.46295 -14.23760 -13.55929 -13.39144 -13.09935 -12.96134 -12.51308 -12.34078 -12.28372 -11.50817 -11.34956 -11.08082 -10.98274 -10.89315 -10.54292 -10.38756 -9.63680 -9.53687 -9.34557 -8.64687 -8.63352 -8.40925 -8.24107 -6.97861 -6.68253 -4.59571 1.06920 1.36033 1.72558 2.42727 2.90307 3.05372 3.09444 3.37302 3.85655 4.05977 4.21600 4.46642 4.47977 4.64809 4.78532 4.93406 5.30179 5.33585 5.46896 5.50930 5.64911 5.83701 5.91039 5.97297 5.98456 6.59427 6.82244 6.90224 7.22823 7.24211 7.47614 7.93147 8.17459 8.44742 8.68341 8.85520 10.25167 10.70941 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.032221 B = 0.004960 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.778311 B = 5644.083890 C = 6485.711996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.187 4.187 3 C 0.147 3.853 4 N -0.535 5.535 5 C 0.297 3.703 6 N -0.443 5.443 7 C 0.145 3.855 8 S 0.144 5.856 9 C -0.009 4.009 10 N -0.205 5.205 11 N -0.340 5.340 12 C 0.351 3.649 13 C -0.447 4.447 14 H 0.084 0.916 15 C 0.080 3.920 16 N -0.734 5.734 17 Si 0.920 3.080 18 H -0.269 1.269 19 H -0.262 1.262 20 H -0.274 1.274 21 N -0.519 5.519 22 C 0.100 3.900 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.164 0.836 27 H 0.195 0.805 28 H 0.280 0.720 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 6.334 -0.521 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.199 4.199 3 C -0.019 4.019 4 N -0.251 5.251 5 C 0.006 3.994 6 N -0.158 5.158 7 C -0.114 4.114 8 S 0.384 5.616 9 C -0.378 4.378 10 N -0.051 5.051 11 N -0.189 5.189 12 C 0.108 3.892 13 C -0.487 4.487 14 H 0.102 0.898 15 C -0.146 4.146 16 N -0.357 5.357 17 Si 0.744 3.256 18 H -0.195 1.195 19 H -0.186 1.186 20 H -0.199 1.199 21 N -0.223 5.223 22 C -0.045 4.045 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.181 0.819 27 H 0.212 0.788 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.294 6.909 -0.478 12.407 hybrid contribution -0.312 -1.507 -0.048 1.540 sum -10.606 5.402 -0.526 11.914 Atomic orbital electron populations 1.20632 0.89440 1.03212 1.02913 1.21171 0.98381 0.93759 1.06633 1.22847 0.89934 0.97141 0.92018 1.68421 1.09660 1.31517 1.15474 1.25148 1.01447 0.82337 0.90442 1.69579 1.06232 1.28704 1.11261 1.23575 0.94301 0.97230 0.96336 1.82997 1.02215 0.89227 1.87175 1.25365 0.99162 0.85402 1.27851 1.75030 0.96356 1.23197 1.10538 1.75580 1.21165 0.92893 1.29282 1.21658 0.76817 0.96575 0.94183 1.18121 0.93257 0.88612 1.48697 0.89794 1.25795 0.96234 0.99379 0.93183 1.69992 1.03887 1.33037 1.28803 0.86118 0.78915 0.81370 0.79219 1.19465 1.18571 1.19869 1.46063 1.07266 1.03784 1.65143 1.21491 0.85929 0.95450 1.01604 0.90474 0.90729 0.91001 0.81892 0.78847 0.90879 0.92525 0.91920 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.65 36.00 0.35 -0.67 16 2 C -0.19 -2.63 5.93 -104.13 -0.62 -3.25 16 3 C 0.15 1.97 10.99 -17.27 -0.19 1.78 16 4 N -0.53 -8.54 10.43 -14.66 -0.15 -8.69 16 5 C 0.30 5.34 12.28 -92.21 -1.13 4.20 16 6 N -0.44 -9.28 7.33 -13.39 -0.10 -9.38 16 7 C 0.14 2.65 6.99 -16.52 -0.12 2.54 16 8 S 0.14 2.58 20.39 -107.50 -2.19 0.39 16 9 C -0.01 -0.21 8.05 -87.34 -0.70 -0.92 16 10 N -0.21 -5.73 9.39 30.88 0.29 -5.44 16 11 N -0.34 -10.30 10.56 31.25 0.33 -9.97 16 12 C 0.35 9.82 7.50 -154.85 -1.16 8.66 16 13 C -0.45 -11.79 9.05 -38.31 -0.35 -12.14 16 14 H 0.08 2.00 7.26 -52.49 -0.38 1.62 16 15 C 0.08 2.04 5.49 -17.29 -0.09 1.95 16 16 N -0.73 -20.16 12.00 55.56 0.67 -19.50 16 17 Si 0.92 18.42 29.57 -169.99 -5.03 13.40 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 N -0.52 -12.50 3.26 -123.21 -0.40 -12.90 16 22 C 0.10 1.78 10.88 59.85 0.65 2.43 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 25 H 0.07 0.71 6.92 -51.93 -0.36 0.36 16 26 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 27 H 0.20 3.09 8.06 -52.49 -0.42 2.67 16 28 H 0.28 6.93 8.30 -40.82 -0.34 6.60 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.94 7.85 -51.93 -0.41 0.54 16 31 H 0.08 1.32 7.48 -51.92 -0.39 0.93 16 LS Contribution 289.38 15.07 4.36 4.36 Total: -1.00 -34.70 289.38 -8.37 -43.07 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -2.78 Total: 0.07 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -3.36 Total: 4.59 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: 0.63 Total: -65.88 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.19 Total: 0.39 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.70 -8.37 -43.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603364527.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.494 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds