Wall clock time and date at job start Thu Apr 9 2020 13:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00266 * 2 1 4 4 H 1.48504 * 109.46908 * 269.99455 * 3 2 1 5 5 H 1.48497 * 109.47561 * 29.99461 * 3 2 1 6 6 H 1.48505 * 109.47306 * 149.99594 * 3 2 1 7 7 C 1.37878 * 119.99466 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00430 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99579 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46877 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47111 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54255 * 68.37599 * 11 10 9 13 13 O 1.42102 * 110.54418 * 291.62380 * 11 10 9 14 14 N 1.65600 * 104.44883 * 180.02562 * 11 10 9 15 15 C 1.46497 * 120.00018 * 65.00027 * 14 11 10 16 16 H 1.08993 * 109.77061 * 334.31981 * 15 14 11 17 17 C 1.52913 * 109.68167 * 213.89610 * 15 14 11 18 18 O 1.42888 * 109.37047 * 188.25664 * 17 15 14 19 19 C 1.42886 * 114.49711 * 64.78202 * 18 17 15 20 20 C 1.53360 * 109.27793 * 295.06654 * 19 18 17 21 21 C 1.51510 * 108.09871 * 52.25876 * 20 19 18 22 22 O 1.20763 * 121.21585 * 131.58000 * 21 20 19 23 23 H 0.97011 * 119.99804 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47544 * 60.00342 * 9 7 2 25 25 H 1.09001 * 109.46965 * 299.99302 * 9 7 2 26 26 H 1.09006 * 109.47050 * 59.99758 * 10 9 7 27 27 H 1.09000 * 109.47208 * 299.99964 * 10 9 7 28 28 H 0.97000 * 119.99763 * 244.99889 * 14 11 10 29 29 H 1.09001 * 109.57567 * 68.20868 * 17 15 14 30 30 H 1.09002 * 109.36309 * 308.17362 * 17 15 14 31 31 H 1.09008 * 109.50436 * 175.12891 * 19 18 17 32 32 H 1.09003 * 109.50499 * 55.00643 * 19 18 17 33 33 H 1.09000 * 109.73864 * 292.60287 * 20 19 18 34 34 H 1.09006 * 109.77666 * 171.93223 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 16 5.8354 -2.6368 0.0009 12 8 6.3341 -2.1466 1.2379 13 8 6.3341 -2.1464 -1.2360 14 7 6.2485 -4.2405 0.0001 15 6 5.9120 -5.0830 -1.1502 16 1 5.0483 -4.6688 -1.6703 17 6 5.5917 -6.5004 -0.6742 18 8 5.4533 -7.3607 -1.8067 19 6 6.6498 -7.5349 -2.5681 20 6 7.0500 -6.1942 -3.1961 21 6 7.0935 -5.1534 -2.0959 22 8 8.0378 -4.4105 -1.9742 23 1 -0.4850 0.8402 -0.0004 24 1 3.8745 -0.6802 0.8911 25 1 3.8751 -0.6806 -0.8889 26 1 3.6583 -3.1504 -0.8893 27 1 3.6577 -3.1507 0.8907 28 1 6.7133 -4.6219 0.7612 29 1 4.6612 -6.4935 -0.1065 30 1 6.4021 -6.8605 -0.0404 31 1 6.4765 -8.2683 -3.3556 32 1 7.4495 -7.8837 -1.9146 33 1 6.3147 -5.9055 -3.9472 34 1 8.0332 -6.2824 -3.6585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000625491602.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:02 Heat of formation + Delta-G solvation = -185.099658 kcal Electronic energy + Delta-G solvation = -20107.995866 eV Core-core repulsion = 16746.128763 eV Total energy + Delta-G solvation = -3361.867103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31898 -38.85230 -38.20914 -37.07684 -36.18324 -35.90610 -33.48587 -32.57438 -30.26369 -27.91160 -24.95906 -24.70181 -23.24128 -20.77212 -20.49149 -19.44179 -18.63119 -18.14234 -17.45510 -17.08647 -17.00256 -16.50388 -16.41598 -16.30239 -15.95861 -15.29993 -15.11871 -14.83181 -14.52029 -13.84009 -13.69567 -13.37944 -13.27186 -13.17438 -13.09504 -12.97579 -12.95091 -12.61130 -12.28270 -12.18440 -11.94011 -11.69540 -11.51456 -11.15061 -10.84327 -10.81320 -10.10695 -8.36490 -6.41719 -0.81078 0.83693 1.31193 1.33962 1.43132 1.63123 2.29156 2.66640 2.78624 2.92025 2.97822 3.23714 3.46822 3.68335 3.84651 3.91945 3.98184 4.06922 4.21381 4.35334 4.54733 4.59318 4.68452 4.82142 4.92683 4.99045 5.05624 5.09457 5.46818 5.90239 6.11187 6.16819 6.40966 6.64672 7.22838 8.78789 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026872 B = 0.004953 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.734900 B = 5651.928047 C = 6098.536692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.017 3.983 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.525 4.525 8 H 0.055 0.945 9 C -0.019 4.019 10 C -0.583 4.583 11 S 2.613 3.387 12 O -0.992 6.992 13 O -0.987 6.987 14 N -1.092 6.092 15 C 0.059 3.941 16 H 0.136 0.864 17 C 0.069 3.931 18 O -0.378 6.378 19 C 0.063 3.937 20 C -0.200 4.200 21 C 0.329 3.671 22 O -0.469 6.469 23 H 0.270 0.730 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.429 0.571 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.113 -18.302 -3.847 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.743 3.257 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.176 1.176 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.058 4.058 10 C -0.715 4.715 11 S 2.709 3.291 12 O -0.982 6.982 13 O -0.977 6.977 14 N -0.853 5.853 15 C -0.050 4.050 16 H 0.153 0.847 17 C -0.010 4.010 18 O -0.295 6.295 19 C -0.013 4.013 20 C -0.238 4.238 21 C 0.203 3.797 22 O -0.342 6.342 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.164 0.836 27 H 0.168 0.832 28 H 0.266 0.734 29 H 0.152 0.848 30 H 0.100 0.900 31 H 0.153 0.847 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.858 -17.107 -3.976 22.372 hybrid contribution -0.185 0.842 0.328 0.922 sum 13.673 -16.265 -3.648 21.559 Atomic orbital electron populations 1.69998 1.07769 1.28331 1.51681 1.25803 0.95562 1.02765 0.94079 0.86096 0.79918 0.79861 0.79788 1.18693 1.19903 1.17580 1.21162 0.90005 0.94034 1.51189 0.92630 1.19387 0.97412 0.91186 0.97838 1.30269 1.21742 1.06283 1.13218 1.04794 0.78253 0.72986 0.73053 1.93520 1.79584 1.78771 1.46310 1.93549 1.78477 1.78951 1.46723 1.55126 1.74239 1.28661 1.27225 1.22441 0.98487 0.96626 0.87473 0.84687 1.22933 1.05767 0.83769 0.88541 1.87998 1.34776 1.65709 1.41063 1.22901 0.87402 0.94735 0.96264 1.23157 1.06704 0.95730 0.98256 1.26020 0.86340 0.81888 0.85442 1.90447 1.35420 1.38703 1.69598 0.92124 0.95072 0.95235 0.83616 0.83152 0.73380 0.84763 0.90019 0.84720 0.91179 0.85872 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 2 C 0.02 0.96 5.47 84.65 0.46 1.42 16 3 Si 0.92 43.66 27.47 68.60 1.88 45.55 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 7 C -0.52 -28.90 9.66 25.60 0.25 -28.65 16 8 H 0.06 3.22 7.99 -2.91 -0.02 3.20 16 9 C -0.02 -0.87 4.05 29.85 0.12 -0.75 16 10 C -0.58 -19.50 5.90 71.98 0.42 -19.08 16 11 S 2.61 85.97 5.39 -56.49 -0.30 85.66 16 12 O -0.99 -38.45 18.08 -127.65 -2.31 -40.75 16 13 O -0.99 -39.61 17.27 -125.77 -2.17 -41.78 16 14 N -1.09 -24.57 4.99 -171.57 -0.86 -25.43 16 15 C 0.06 1.11 3.01 44.48 0.13 1.25 16 16 H 0.14 2.33 7.17 -2.39 -0.02 2.31 16 17 C 0.07 0.82 6.37 71.95 0.46 1.28 16 18 O -0.38 -4.88 10.68 -148.98 -1.59 -6.47 16 19 C 0.06 0.56 6.85 72.10 0.49 1.05 16 20 C -0.20 -2.60 6.40 30.23 0.19 -2.41 16 21 C 0.33 7.33 6.74 29.62 0.20 7.53 16 22 O -0.47 -14.99 16.84 -1.07 -0.02 -15.00 16 23 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 24 H 0.03 1.43 7.20 -2.39 -0.02 1.42 16 25 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 26 H 0.15 4.18 7.44 -2.39 -0.02 4.16 16 27 H 0.15 4.36 8.14 -2.39 -0.02 4.34 16 28 H 0.43 7.54 8.79 -96.75 -0.85 6.69 16 29 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 0.71 8.13 -2.39 -0.02 0.69 16 31 H 0.14 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.48 8.13 -2.39 -0.02 0.46 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -81.60 301.33 -2.12 -83.71 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.21 Total: 9.45 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 2.73 Total: -38.37 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -0.56 Total: -82.00 kcal Atomic # 8 Polarization: -97.91 SS G_CDS: -6.09 Total: -104.00 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Atomic # 16 Polarization: 85.97 SS G_CDS: -0.30 Total: 85.66 kcal Total: -81.60 -2.12 -83.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000625491602.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.386 kcal (2) G-P(sol) polarization free energy of solvation -81.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds