Wall clock time and date at job start Thu Apr 9 2020 13:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99823 * 2 1 4 4 H 1.48497 * 109.46780 * 239.99914 * 3 2 1 5 5 H 1.48501 * 109.47109 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47248 * 119.99947 * 3 2 1 7 7 C 1.37876 * 120.00579 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00528 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99385 * 359.97438 * 7 2 1 10 10 C 1.53011 * 109.46786 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46750 * 180.02562 * 10 9 7 12 12 S 1.65608 * 119.99783 * 165.00174 * 11 10 9 13 13 O 1.42093 * 104.27548 * 308.92910 * 12 11 10 14 14 O 1.42098 * 104.27542 * 181.06972 * 12 11 10 15 15 C 1.81400 * 104.44764 * 65.00112 * 12 11 10 16 16 H 1.09005 * 112.84956 * 311.19805 * 15 12 11 17 17 C 1.53784 * 113.69123 * 82.46440 * 15 12 11 18 18 C 1.53781 * 87.07940 * 139.99370 * 17 15 12 19 19 H 1.09000 * 113.69569 * 89.12968 * 18 17 15 20 20 C 1.50706 * 113.61233 * 220.02279 * 18 17 15 21 21 O 1.20822 * 120.00226 * 97.49764 * 20 18 17 22 22 O 1.34230 * 119.99763 * 277.49630 * 20 18 17 23 23 C 1.53776 * 113.61446 * 179.97438 * 15 12 11 24 24 H 0.96998 * 120.00391 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47399 * 60.00805 * 9 7 2 26 26 H 1.08993 * 109.47611 * 300.00297 * 9 7 2 27 27 H 1.08998 * 109.47012 * 60.00555 * 10 9 7 28 28 H 1.08993 * 109.47391 * 300.00558 * 10 9 7 29 29 H 0.97000 * 120.00862 * 345.00106 * 11 10 9 30 30 H 1.08996 * 113.60998 * 25.44489 * 17 15 12 31 31 H 1.08997 * 113.61611 * 254.53816 * 17 15 12 32 32 H 0.96692 * 116.99954 * 179.97438 * 22 20 18 33 33 H 1.09011 * 113.61528 * 105.38328 * 23 15 12 34 34 H 1.09003 * 113.69414 * 334.49490 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 7 1.5130 -4.9307 0.0020 12 16 2.2986 -6.3405 -0.3693 13 8 2.9608 -6.0603 -1.5949 14 8 1.2870 -7.3356 -0.2939 15 6 3.5026 -6.5541 0.9705 16 1 4.0840 -5.6527 1.1648 17 6 2.9094 -7.1897 2.2390 18 6 4.2159 -7.9927 2.3527 19 1 4.9931 -7.4860 2.9247 20 6 4.0104 -9.4223 2.7832 21 8 3.9732 -10.3028 1.9567 22 8 3.8686 -9.7173 4.0850 23 6 4.3604 -7.8228 0.8315 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8881 26 1 0.6248 -2.5563 0.8919 27 1 2.8727 -3.6039 0.8910 28 1 2.8715 -3.6046 -0.8889 29 1 0.5679 -4.9451 0.2198 30 1 2.0322 -7.8079 2.0481 31 1 2.7601 -6.4812 3.0536 32 1 3.7387 -10.6481 4.3125 33 1 5.3830 -7.6255 0.5095 34 1 3.8809 -8.6148 0.2562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723278897.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:08 Heat of formation + Delta-G solvation = -153.624227 kcal Electronic energy + Delta-G solvation = -19467.991765 eV Core-core repulsion = 16107.489539 eV Total energy + Delta-G solvation = -3360.502226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98071 -38.49695 -36.92958 -36.35766 -35.79484 -35.39674 -32.76652 -29.16133 -28.12119 -26.31045 -24.50306 -23.01544 -21.18828 -20.13558 -19.11803 -18.51773 -17.88402 -17.17808 -16.37866 -16.28935 -15.78193 -15.71343 -15.39159 -14.57463 -14.08622 -13.87211 -13.63932 -13.08747 -12.93257 -12.58023 -12.51299 -11.97734 -11.91278 -11.86940 -11.82630 -11.76119 -11.31230 -11.14353 -11.10102 -10.85307 -10.65314 -10.58628 -10.26808 -9.60978 -9.31650 -8.90271 -8.43368 -6.10462 -4.14460 0.40374 1.82066 2.68295 2.91883 3.28457 3.33574 3.35581 3.63013 3.75474 3.96529 4.00710 4.38384 4.43964 4.62872 4.96011 5.07397 5.16582 5.24514 5.26222 5.39323 5.43942 5.70317 5.76782 6.12666 6.14521 6.42596 6.68993 7.39690 7.52880 7.54453 7.62672 7.87727 8.24937 8.91312 9.50375 11.00850 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029645 B = 0.003778 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.297476 B = 7410.418720 C = 7807.375552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.018 3.982 10 C 0.116 3.884 11 N -1.111 6.111 12 S 2.617 3.383 13 O -0.954 6.954 14 O -0.964 6.964 15 C -0.631 4.631 16 H 0.161 0.839 17 C -0.090 4.090 18 C -0.099 4.099 19 H 0.135 0.865 20 C 0.487 3.513 21 O -0.511 6.511 22 O -0.514 6.514 23 C -0.091 4.091 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.416 0.584 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.410 0.590 33 H 0.100 0.900 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.091 -16.043 7.946 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.021 4.021 10 C -0.009 4.009 11 N -0.872 5.872 12 S 2.708 3.292 13 O -0.944 6.944 14 O -0.954 6.954 15 C -0.738 4.738 16 H 0.179 0.821 17 C -0.128 4.128 18 C -0.119 4.119 19 H 0.153 0.847 20 C 0.329 3.671 21 O -0.398 6.398 22 O -0.326 6.326 23 C -0.130 4.130 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.251 0.749 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.269 0.731 33 H 0.119 0.881 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.031 -16.286 6.812 19.394 hybrid contribution 0.326 0.665 0.918 1.179 sum 8.357 -15.621 7.730 19.329 Atomic orbital electron populations 1.69942 1.06107 1.27029 1.50007 1.25003 0.94878 0.99387 0.94985 0.86590 0.79532 0.82784 0.78698 1.20091 1.21256 1.20175 1.21049 0.93134 0.90549 1.51819 0.92310 1.19276 0.94058 0.90509 0.98249 1.21662 0.96191 0.82908 1.00136 1.55510 1.21508 1.22062 1.88139 1.04721 0.75257 0.73348 0.75901 1.93596 1.77455 1.83918 1.39386 1.93576 1.54961 1.59417 1.87444 1.32063 1.17137 1.06936 1.17711 0.82107 1.22589 0.95977 0.98340 0.95896 1.22454 1.01931 0.89295 0.98186 0.84732 1.23328 0.71816 0.92096 0.79865 1.90739 1.46226 1.49495 1.53360 1.84549 1.84055 1.36030 1.27916 1.22612 1.01896 0.93954 0.94500 0.92732 0.95573 0.95771 0.93046 0.91335 0.74938 0.87502 0.87863 0.73100 0.88147 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.01 9.11 -34.44 -0.31 -14.33 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.43 5.12 -27.88 -0.14 0.28 16 10 C 0.12 2.15 6.07 -4.04 -0.02 2.13 16 11 N -1.11 -17.59 5.89 -10.61 -0.06 -17.65 16 12 S 2.62 38.28 5.43 -107.50 -0.58 37.70 16 13 O -0.95 -17.37 17.50 -57.54 -1.01 -18.37 16 14 O -0.96 -16.04 17.26 -57.54 -0.99 -17.04 16 15 C -0.63 -6.43 4.41 -25.92 -0.11 -6.54 16 16 H 0.16 1.34 8.13 -51.93 -0.42 0.92 16 17 C -0.09 -0.81 7.19 -25.92 -0.19 -1.00 16 18 C -0.10 -0.82 4.26 -90.98 -0.39 -1.21 16 19 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 20 C 0.49 4.69 7.85 36.01 0.28 4.97 16 21 O -0.51 -6.54 16.65 -18.75 -0.31 -6.85 16 22 O -0.51 -3.68 13.42 -39.26 -0.53 -4.20 16 23 C -0.09 -0.87 6.99 -25.94 -0.18 -1.05 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 28 H 0.07 1.31 7.69 -51.93 -0.40 0.91 16 29 H 0.42 6.26 8.62 -34.47 -0.30 5.97 16 30 H 0.11 1.05 7.39 -51.93 -0.38 0.66 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.41 1.26 9.10 45.56 0.41 1.67 16 33 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.10 1.12 7.39 -51.93 -0.38 0.74 16 LS Contribution 309.96 15.07 4.67 4.67 Total: -1.00 -35.71 309.96 -7.81 -43.52 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -3.55 Total: 2.72 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -1.16 Total: -15.21 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.67 Total: -42.69 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -2.84 Total: -46.47 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 38.28 SS G_CDS: -0.58 Total: 37.70 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.71 -7.81 -43.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723278897.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.100 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds