Wall clock time and date at job start Thu Apr 9 2020 13:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99823 * 2 1 4 4 H 1.48497 * 109.46780 * 239.99914 * 3 2 1 5 5 H 1.48501 * 109.47109 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47248 * 119.99947 * 3 2 1 7 7 C 1.37876 * 120.00579 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00528 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99385 * 359.97438 * 7 2 1 10 10 C 1.53011 * 109.46786 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46750 * 180.02562 * 10 9 7 12 12 S 1.65608 * 119.99783 * 165.00174 * 11 10 9 13 13 O 1.42093 * 104.27548 * 308.92910 * 12 11 10 14 14 O 1.42098 * 104.27542 * 181.06972 * 12 11 10 15 15 C 1.81400 * 104.44764 * 65.00112 * 12 11 10 16 16 H 1.09005 * 112.84956 * 311.19805 * 15 12 11 17 17 C 1.53784 * 113.69123 * 82.46440 * 15 12 11 18 18 C 1.53781 * 87.07940 * 139.99370 * 17 15 12 19 19 H 1.09000 * 113.69569 * 89.12968 * 18 17 15 20 20 C 1.50706 * 113.61233 * 220.02279 * 18 17 15 21 21 O 1.20822 * 120.00226 * 97.49764 * 20 18 17 22 22 O 1.34230 * 119.99763 * 277.49630 * 20 18 17 23 23 C 1.53776 * 113.61446 * 179.97438 * 15 12 11 24 24 H 0.96998 * 120.00391 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47399 * 60.00805 * 9 7 2 26 26 H 1.08993 * 109.47611 * 300.00297 * 9 7 2 27 27 H 1.08998 * 109.47012 * 60.00555 * 10 9 7 28 28 H 1.08993 * 109.47391 * 300.00558 * 10 9 7 29 29 H 0.97000 * 120.00862 * 345.00106 * 11 10 9 30 30 H 1.08996 * 113.60998 * 25.44489 * 17 15 12 31 31 H 1.08997 * 113.61611 * 254.53816 * 17 15 12 32 32 H 0.96692 * 116.99954 * 179.97438 * 22 20 18 33 33 H 1.09011 * 113.61528 * 105.38328 * 23 15 12 34 34 H 1.09003 * 113.69414 * 334.49490 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 7 1.5130 -4.9307 0.0020 12 16 2.2986 -6.3405 -0.3693 13 8 2.9608 -6.0603 -1.5949 14 8 1.2870 -7.3356 -0.2939 15 6 3.5026 -6.5541 0.9705 16 1 4.0840 -5.6527 1.1648 17 6 2.9094 -7.1897 2.2390 18 6 4.2159 -7.9927 2.3527 19 1 4.9931 -7.4860 2.9247 20 6 4.0104 -9.4223 2.7832 21 8 3.9732 -10.3028 1.9567 22 8 3.8686 -9.7173 4.0850 23 6 4.3604 -7.8228 0.8315 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8881 26 1 0.6248 -2.5563 0.8919 27 1 2.8727 -3.6039 0.8910 28 1 2.8715 -3.6046 -0.8889 29 1 0.5679 -4.9451 0.2198 30 1 2.0322 -7.8079 2.0481 31 1 2.7601 -6.4812 3.0536 32 1 3.7387 -10.6481 4.3125 33 1 5.3830 -7.6255 0.5095 34 1 3.8809 -8.6148 0.2562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723278897.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:08 Heat of formation + Delta-G solvation = -182.579510 kcal Electronic energy + Delta-G solvation = -19469.247361 eV Core-core repulsion = 16107.489539 eV Total energy + Delta-G solvation = -3361.757821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.69955 -39.23155 -38.19930 -37.10231 -37.06015 -36.90221 -34.68806 -30.95504 -28.88474 -27.03500 -26.34121 -23.82934 -22.89936 -20.94148 -20.13588 -19.36625 -18.90596 -18.40891 -18.06644 -17.06828 -17.04176 -16.65632 -16.41550 -16.22964 -15.45907 -15.39864 -14.43849 -14.37982 -13.84447 -13.68381 -13.36859 -13.35154 -13.22587 -13.17715 -13.13107 -12.92228 -12.67678 -12.54678 -12.42268 -12.29885 -11.80280 -11.59869 -11.46243 -11.33677 -11.23381 -10.56266 -10.17484 -8.17732 -6.28628 -0.73686 1.11082 1.46103 1.48826 1.56094 1.73738 2.10123 2.45426 2.75909 2.81216 3.07797 3.17464 3.29172 3.49589 3.79970 4.23721 4.37259 4.40798 4.44083 4.54593 4.61670 4.73420 4.82551 4.90084 5.03674 5.07360 5.53835 5.58924 5.67799 5.84821 6.07251 6.26464 6.88197 6.96416 7.41048 8.94178 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029645 B = 0.003778 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.297476 B = 7410.418720 C = 7807.375552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.018 3.982 10 C 0.129 3.871 11 N -1.115 6.115 12 S 2.613 3.387 13 O -0.998 6.998 14 O -0.991 6.991 15 C -0.601 4.601 16 H 0.193 0.807 17 C -0.095 4.095 18 C -0.089 4.089 19 H 0.172 0.828 20 C 0.490 3.510 21 O -0.551 6.551 22 O -0.507 6.507 23 C -0.104 4.104 24 H 0.263 0.737 25 H -0.009 1.009 26 H 0.010 0.990 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.417 0.583 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.427 0.573 33 H 0.126 0.874 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.498 -15.786 9.971 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.090 0.910 9 C -0.021 4.021 10 C 0.003 3.997 11 N -0.875 5.875 12 S 2.711 3.289 13 O -0.988 6.988 14 O -0.982 6.982 15 C -0.714 4.714 16 H 0.211 0.789 17 C -0.133 4.133 18 C -0.109 4.109 19 H 0.189 0.811 20 C 0.333 3.667 21 O -0.442 6.442 22 O -0.320 6.320 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.029 0.971 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.251 0.749 30 H 0.112 0.888 31 H 0.149 0.851 32 H 0.289 0.711 33 H 0.144 0.856 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.401 -16.033 8.815 21.046 hybrid contribution -0.425 0.464 0.356 0.723 sum 9.976 -15.569 9.170 20.640 Atomic orbital electron populations 1.70086 1.07882 1.27873 1.51482 1.25954 0.95694 1.03394 0.94713 0.85495 0.78196 0.78005 0.79315 1.19452 1.21457 1.18549 1.21582 0.94068 0.91654 1.50817 0.90962 1.19170 0.94624 0.92410 0.95911 1.21372 0.94922 0.81886 1.01491 1.55379 1.21893 1.21677 1.88530 1.04618 0.75494 0.72306 0.76508 1.93537 1.77884 1.84183 1.43193 1.93537 1.56875 1.59631 1.88155 1.31827 1.15505 1.08923 1.15121 0.78929 1.22736 0.96036 0.98783 0.95725 1.22532 1.02260 0.88693 0.97377 0.81092 1.23568 0.70735 0.92291 0.80081 1.90737 1.48182 1.50782 1.54493 1.84508 1.83308 1.37758 1.26460 1.22787 1.02887 0.92764 0.95811 0.92826 0.99011 0.97130 0.89512 0.92063 0.74869 0.88770 0.85131 0.71070 0.85615 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 42.11 29.54 68.60 2.03 44.13 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.54 -28.66 9.11 25.60 0.23 -28.42 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 0.85 5.12 29.85 0.15 1.00 16 10 C 0.13 4.65 6.07 86.38 0.52 5.18 16 11 N -1.12 -35.05 5.89 -187.49 -1.10 -36.16 16 12 S 2.61 75.61 5.43 -56.49 -0.31 75.30 16 13 O -1.00 -36.73 17.50 -127.65 -2.23 -38.97 16 14 O -0.99 -33.66 17.26 -127.65 -2.20 -35.87 16 15 C -0.60 -10.41 4.41 31.12 0.14 -10.27 16 16 H 0.19 2.23 8.13 -2.38 -0.02 2.21 16 17 C -0.09 -1.40 7.19 31.12 0.22 -1.17 16 18 C -0.09 -1.14 4.26 -11.03 -0.05 -1.19 16 19 H 0.17 1.01 8.14 -2.39 -0.02 0.99 16 20 C 0.49 8.24 7.85 71.24 0.56 8.80 16 21 O -0.55 -13.57 16.65 21.98 0.37 -13.20 16 22 O -0.51 -5.76 13.42 -51.41 -0.69 -6.45 16 23 C -0.10 -1.70 6.99 31.10 0.22 -1.48 16 24 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 25 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 27 H 0.09 2.52 8.13 -2.39 -0.02 2.50 16 28 H 0.06 2.30 7.69 -2.39 -0.02 2.28 16 29 H 0.42 12.84 8.62 -96.74 -0.83 12.00 16 30 H 0.09 1.69 7.39 -2.39 -0.02 1.67 16 31 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.43 1.58 9.10 -74.06 -0.67 0.90 16 33 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.09 1.79 7.39 -2.39 -0.02 1.77 16 Total: -1.00 -79.16 309.96 -1.77 -80.93 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -0.37 Total: 11.89 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 2.46 Total: -27.07 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -0.82 Total: -90.69 kcal Atomic # 8 Polarization: -89.73 SS G_CDS: -4.76 Total: -94.49 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 75.61 SS G_CDS: -0.31 Total: 75.30 kcal Total: -79.16 -1.77 -80.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723278897.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.654 kcal (2) G-P(sol) polarization free energy of solvation -79.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds