Wall clock time and date at job start Thu Apr 9 2020 13:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86804 * 119.99549 * 2 1 4 4 H 1.48506 * 109.47046 * 269.99990 * 3 2 1 5 5 H 1.48491 * 109.47505 * 30.00255 * 3 2 1 6 6 H 1.48500 * 109.47013 * 150.00622 * 3 2 1 7 7 C 1.39929 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00237 * 195.63018 * 7 2 1 9 9 C 1.41405 * 119.99870 * 15.63471 * 7 2 1 10 10 C 1.40769 * 120.21315 * 29.19097 * 9 7 2 11 11 C 1.37650 * 119.88924 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.31846 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42875 * 0.23709 * 12 11 10 14 14 N 1.39934 * 119.94836 * 179.72230 * 13 12 11 15 15 C 1.34780 * 120.00371 * 213.04895 * 14 13 12 16 16 O 1.21278 * 119.99695 * 5.09003 * 15 14 13 17 17 C 1.50699 * 119.99947 * 185.09150 * 15 14 13 18 18 H 1.09000 * 110.76099 * 32.04247 * 17 15 14 19 19 C 1.55142 * 110.85412 * 155.76368 * 17 15 14 20 20 C 1.53856 * 106.89768 * 160.29086 * 19 17 15 21 21 C 1.54268 * 108.92775 * 312.74674 * 20 19 17 22 22 S 1.83098 * 104.65205 * 27.95055 * 21 20 19 23 23 C 1.38287 * 120.10360 * 359.48723 * 13 12 11 24 24 H 0.96990 * 120.00366 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.05955 * 359.95192 * 10 9 7 26 26 H 1.07994 * 119.84190 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.78579 * 179.97438 * 12 11 10 28 28 H 0.97005 * 120.00050 * 33.04740 * 14 13 12 29 29 H 1.08996 * 109.97516 * 279.65300 * 19 17 15 30 30 H 1.08998 * 109.97606 * 40.93066 * 19 17 15 31 31 H 1.08996 * 109.60819 * 192.82184 * 20 19 17 32 32 H 1.09006 * 109.60392 * 72.66474 * 20 19 17 33 33 H 1.09000 * 110.39923 * 269.16049 * 21 20 19 34 34 H 1.09000 * 110.40331 * 146.74457 * 21 20 19 35 35 H 1.08001 * 120.15947 * 180.23303 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4403 0.6999 7 6 2.0080 -1.2118 -0.0005 8 1 3.0581 -1.2292 0.2515 9 6 1.3403 -2.4136 -0.3311 10 6 0.2416 -2.3946 -1.2109 11 6 -0.4032 -3.5685 -1.5285 12 6 0.0235 -4.7697 -0.9861 13 6 1.1055 -4.8031 -0.1101 14 7 1.5244 -6.0212 0.4365 15 6 2.0394 -6.0597 1.6814 16 8 2.0549 -5.0563 2.3625 17 6 2.5959 -7.3495 2.2271 18 1 3.0288 -7.9520 1.4285 19 6 3.6374 -7.0732 3.3432 20 6 3.7695 -8.3689 4.1623 21 6 2.3586 -8.8969 4.4945 22 16 1.3030 -8.2897 3.1272 23 6 1.7697 -3.6350 0.2166 24 1 -0.4850 0.8399 0.0004 25 1 -0.0952 -1.4605 -1.6357 26 1 -1.2463 -3.5530 -2.2032 27 1 -0.4889 -5.6855 -1.2408 28 1 1.4442 -6.8381 -0.0806 29 1 4.5986 -6.8135 2.8996 30 1 3.2909 -6.2618 3.9832 31 1 4.3104 -8.1640 5.0862 32 1 4.3121 -9.1150 3.5816 33 1 2.0162 -8.4928 5.4471 34 1 2.3571 -9.9866 4.5205 35 1 2.6113 -3.6604 0.8929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313444284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:06 Heat of formation + Delta-G solvation = -42.291489 kcal Electronic energy + Delta-G solvation = -18576.798692 eV Core-core repulsion = 15664.266230 eV Total energy + Delta-G solvation = -2912.532462 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35568 -39.11428 -36.80028 -36.17151 -34.87629 -31.78004 -31.55544 -29.62010 -27.28197 -26.36366 -23.57037 -22.81095 -21.93464 -21.17785 -19.58256 -18.68339 -17.83795 -17.44714 -16.83554 -16.50896 -16.23457 -15.83686 -15.39998 -15.05457 -14.80521 -14.69599 -14.17764 -13.85009 -13.62839 -13.23609 -13.17583 -12.83718 -12.69014 -12.57370 -12.44517 -12.23993 -12.02896 -11.80421 -11.59672 -11.29697 -11.03092 -10.98886 -10.70735 -9.39379 -8.81609 -8.76332 -8.63429 -6.39280 0.24518 0.90424 0.98811 1.27497 1.35967 1.48485 1.50160 1.95842 2.06605 2.21669 2.72979 3.35002 3.60025 3.69809 3.77747 4.01106 4.07097 4.21490 4.43140 4.58497 4.61437 4.72394 4.89338 4.95484 4.99243 5.05966 5.09399 5.17386 5.18175 5.29836 5.71194 5.81407 6.03001 6.07390 6.31708 6.53121 6.65465 6.91418 6.97852 7.19999 8.35611 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026028 B = 0.004277 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.505495 B = 6544.423746 C = 7283.870991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.505 4.505 8 H 0.068 0.932 9 C 0.092 3.908 10 C -0.192 4.192 11 C -0.091 4.091 12 C -0.249 4.249 13 C 0.156 3.844 14 N -0.653 5.653 15 C 0.519 3.481 16 O -0.552 6.552 17 C -0.055 4.055 18 H 0.150 0.850 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.064 4.064 22 S -0.305 6.305 23 C -0.233 4.233 24 H 0.288 0.712 25 H 0.100 0.900 26 H 0.124 0.876 27 H 0.130 0.870 28 H 0.421 0.579 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 -16.534 4.264 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.089 3.911 10 C -0.212 4.212 11 C -0.110 4.110 12 C -0.270 4.270 13 C 0.062 3.938 14 N -0.298 5.298 15 C 0.305 3.695 16 O -0.429 6.429 17 C -0.186 4.186 18 H 0.168 0.832 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.211 4.211 22 S -0.080 6.080 23 C -0.255 4.255 24 H 0.099 0.901 25 H 0.118 0.882 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.259 0.741 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.143 0.857 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.218 -15.914 4.577 17.362 hybrid contribution 1.066 0.883 0.039 1.385 sum 6.284 -15.031 4.616 16.933 Atomic orbital electron populations 1.69870 1.08929 1.30536 1.36325 1.26736 0.95574 1.04392 0.91166 0.85177 0.78830 0.75741 0.79745 1.18043 1.19075 1.18666 1.19743 0.97336 0.92443 1.44007 0.91423 1.17826 0.91918 0.92446 0.88894 1.21234 1.00800 0.97217 1.01927 1.20836 0.98744 0.92135 0.99236 1.20477 1.00399 0.98412 1.07727 1.17542 0.94886 0.85015 0.96310 1.43343 1.61495 1.09337 1.15655 1.20620 0.77625 0.90278 0.80980 1.90759 1.55995 1.37488 1.58629 1.24137 0.97357 0.94695 1.02457 0.83249 1.22610 0.98310 1.00009 0.94871 1.22293 0.95455 0.95669 1.02028 1.24253 0.95040 1.04994 0.96859 1.87999 1.21845 1.64972 1.33176 1.20943 1.04887 0.92918 1.06750 0.90130 0.88215 0.85771 0.85215 0.74143 0.88057 0.91661 0.87482 0.88020 0.88522 0.85676 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.06 11.15 21.82 0.24 -45.81 16 2 C 0.04 1.91 5.15 85.25 0.44 2.35 16 3 Si 0.98 40.61 29.59 68.60 2.03 42.64 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.51 -29.58 9.04 23.46 0.21 -29.37 16 8 H 0.07 3.90 7.89 -2.91 -0.02 3.87 16 9 C 0.09 5.36 5.52 -21.31 -0.12 5.24 16 10 C -0.19 -10.49 8.66 22.75 0.20 -10.30 16 11 C -0.09 -4.24 10.02 22.20 0.22 -4.01 16 12 C -0.25 -10.79 9.97 22.58 0.23 -10.57 16 13 C 0.16 7.19 6.28 38.10 0.24 7.43 16 14 N -0.65 -23.45 5.34 -303.66 -1.62 -25.08 16 15 C 0.52 19.03 6.84 87.66 0.60 19.63 16 16 O -0.55 -26.34 13.54 -3.02 -0.04 -26.38 16 17 C -0.06 -1.36 3.63 30.58 0.11 -1.25 16 18 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 19 C -0.12 -2.51 5.72 31.62 0.18 -2.33 16 20 C -0.12 -1.46 6.39 31.31 0.20 -1.26 16 21 C -0.06 -0.95 7.34 72.41 0.53 -0.41 16 22 S -0.31 -7.52 22.71 -56.49 -1.28 -8.81 16 23 C -0.23 -12.77 8.39 22.85 0.19 -12.58 16 24 H 0.29 14.37 8.30 -92.72 -0.77 13.60 16 25 H 0.10 5.64 6.43 -2.91 -0.02 5.62 16 26 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 27 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 28 H 0.42 11.24 8.82 -92.70 -0.82 10.42 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.83 7.33 -2.39 -0.02 1.81 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 5.04 6.39 -2.91 -0.02 5.02 16 Total: -1.00 -74.02 306.70 2.85 -71.17 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.29 Total: 29.70 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 3.23 Total: -37.44 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.38 Total: -70.89 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.04 Total: -26.38 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.28 Total: -8.81 kcal Total: -74.02 2.85 -71.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313444284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.882 kcal (2) G-P(sol) polarization free energy of solvation -74.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds