Wall clock time and date at job start Thu Apr 9 2020 13:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86802 * 119.99620 * 2 1 4 4 H 1.48501 * 109.47404 * 269.99845 * 3 2 1 5 5 H 1.48498 * 109.47095 * 30.00026 * 3 2 1 6 6 H 1.48507 * 109.47225 * 150.00064 * 3 2 1 7 7 C 1.39960 * 120.00538 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99960 * 168.51147 * 7 2 1 9 9 C 1.41071 * 119.99732 * 348.51901 * 7 2 1 10 10 C 1.40732 * 120.30045 * 331.28981 * 9 7 2 11 11 C 1.36472 * 119.94203 * 180.34109 * 10 9 7 12 12 C 1.38869 * 120.57444 * 359.66573 * 11 10 9 13 13 C 1.38224 * 120.61648 * 0.03514 * 12 11 10 14 14 C 1.38643 * 120.03402 * 0.02562 * 13 12 11 15 15 N 1.39126 * 120.28601 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99688 * 340.13377 * 15 14 13 17 17 O 1.21284 * 120.00100 * 354.46770 * 16 15 14 18 18 C 1.50698 * 119.99872 * 174.46168 * 16 15 14 19 19 H 1.08993 * 109.60023 * 59.67555 * 18 16 15 20 20 C 1.52944 * 109.60097 * 180.02562 * 18 16 15 21 21 C 1.53711 * 112.48927 * 150.03481 * 20 18 16 22 22 S 1.83390 * 104.97025 * 357.16835 * 21 20 18 23 23 C 1.55151 * 109.60301 * 299.53726 * 18 16 15 24 24 H 0.96996 * 120.00250 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.03227 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.71055 * 179.68265 * 11 10 9 27 27 H 1.07998 * 119.68729 * 180.02562 * 12 11 10 28 28 H 1.07994 * 119.98040 * 179.97438 * 13 12 11 29 29 H 0.96999 * 120.00484 * 160.14174 * 15 14 13 30 30 H 1.08998 * 108.88897 * 29.23545 * 20 18 16 31 31 H 1.09006 * 108.88515 * 270.82122 * 20 18 16 32 32 H 1.09002 * 110.33412 * 238.29958 * 21 20 18 33 33 H 1.08996 * 110.34250 * 116.04577 * 21 20 18 34 34 H 1.09004 * 111.13120 * 80.72387 * 23 18 16 35 35 H 1.08999 * 111.13719 * 316.54230 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4900 2.0466 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5401 1.4403 0.7001 7 6 2.0084 -1.2120 0.0005 8 1 3.0722 -1.2214 -0.1857 9 6 1.3243 -2.4214 0.2443 10 6 0.1669 -2.4336 1.0447 11 6 -0.4853 -3.6088 1.2815 12 6 -0.0210 -4.7972 0.7330 13 6 1.1098 -4.8113 -0.0617 14 6 1.7928 -3.6322 -0.3177 15 7 2.9319 -3.6404 -1.1164 16 6 3.6071 -4.7898 -1.3153 17 8 3.2820 -5.7950 -0.7196 18 6 4.7659 -4.8260 -2.2780 19 1 5.5313 -4.1201 -1.9557 20 6 5.3539 -6.2373 -2.3204 21 6 5.9724 -6.5757 -3.6863 22 16 5.6445 -5.1055 -4.7323 23 6 4.2746 -4.4422 -3.6988 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2021 -1.5146 1.4755 26 1 -1.3702 -3.6147 1.9005 27 1 -0.5485 -5.7189 0.9293 28 1 1.4620 -5.7413 -0.4826 29 1 3.2403 -2.8190 -1.5300 30 1 4.5633 -6.9556 -2.1033 31 1 6.1241 -6.3218 -1.5537 32 1 5.4929 -7.4576 -4.1112 33 1 7.0456 -6.7380 -3.5865 34 1 4.1896 -3.3608 -3.8064 35 1 3.3308 -4.9341 -3.9344 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334140311.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:14 Heat of formation + Delta-G solvation = -34.869817 kcal Electronic energy + Delta-G solvation = -18992.166602 eV Core-core repulsion = 16079.955968 eV Total energy + Delta-G solvation = -2912.210634 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49017 -39.18616 -36.54459 -35.55356 -35.48673 -31.56607 -31.22672 -29.82508 -27.19525 -26.47490 -24.01407 -22.95452 -21.82882 -20.59963 -19.26189 -18.62996 -17.95707 -17.43582 -16.99110 -16.63669 -15.98114 -15.66791 -15.36067 -14.81167 -14.71254 -14.48447 -14.33875 -13.77808 -13.49584 -13.21192 -13.10287 -12.94381 -12.81654 -12.71054 -12.60115 -12.15557 -12.01116 -11.77305 -11.54206 -11.31751 -11.06788 -11.02869 -10.28199 -9.30512 -8.79407 -8.76780 -8.48456 -6.30828 0.73698 0.83786 1.05240 1.27096 1.43031 1.51911 1.56358 1.80894 2.22128 2.32950 2.79526 3.43912 3.64774 3.71664 3.75090 4.00128 4.08951 4.22264 4.47515 4.54072 4.61677 4.65660 4.76924 4.82916 4.97758 5.03332 5.13754 5.22406 5.29789 5.44779 5.79399 5.82930 6.11953 6.19229 6.24771 6.64794 6.73313 6.95499 7.01017 7.33147 8.37872 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.005532 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.933170 B = 5059.808107 C = 6349.579203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.490 4.490 8 H 0.085 0.915 9 C 0.070 3.930 10 C -0.169 4.169 11 C -0.124 4.124 12 C -0.225 4.225 13 C -0.122 4.122 14 C 0.015 3.985 15 N -0.630 5.630 16 C 0.505 3.495 17 O -0.564 6.564 18 C -0.098 4.098 19 H 0.130 0.870 20 C -0.116 4.116 21 C -0.054 4.054 22 S -0.314 6.314 23 C -0.054 4.054 24 H 0.286 0.714 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.414 0.586 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.861 -4.507 -6.214 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.520 4.520 8 H 0.103 0.897 9 C 0.066 3.934 10 C -0.189 4.189 11 C -0.143 4.143 12 C -0.245 4.245 13 C -0.142 4.142 14 C -0.080 4.080 15 N -0.271 5.271 16 C 0.292 3.708 17 O -0.445 6.445 18 C -0.121 4.121 19 H 0.148 0.852 20 C -0.155 4.155 21 C -0.202 4.202 22 S -0.087 6.087 23 C -0.203 4.203 24 H 0.097 0.903 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.131 0.869 28 H 0.144 0.856 29 H 0.251 0.749 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.994 -4.667 -6.908 13.014 hybrid contribution -0.646 0.760 1.048 1.447 sum 9.347 -3.907 -5.860 11.704 Atomic orbital electron populations 1.69868 1.08949 1.30371 1.36353 1.26679 0.95444 1.04248 0.91360 0.85217 0.78966 0.76153 0.79503 1.18481 1.19915 1.18238 1.19538 0.96233 0.90963 1.45283 0.89730 1.17703 0.93587 0.91761 0.90334 1.20954 0.99080 0.97011 1.01853 1.20728 0.99617 0.93143 1.00807 1.20670 1.00032 0.97397 1.06410 1.21204 0.95442 0.97319 1.00203 1.17991 0.92639 0.95132 1.02197 1.42958 1.25137 1.11730 1.47298 1.20949 0.84046 0.82691 0.83067 1.90559 1.68426 1.35239 1.50268 1.22224 0.95719 1.01077 0.93085 0.85230 1.21794 1.01713 0.94491 0.97496 1.24001 1.05786 0.96652 0.93759 1.87902 1.46039 1.33154 1.41629 1.24314 0.98305 1.05539 0.92098 0.90289 0.87451 0.87262 0.86925 0.85597 0.74876 0.90629 0.88639 0.88153 0.86041 0.85686 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.26 10.88 21.83 0.24 -41.03 16 2 C 0.04 1.75 5.24 85.26 0.45 2.19 16 3 Si 0.98 35.50 29.58 68.60 2.03 37.52 16 4 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 7 C -0.49 -23.90 8.33 23.38 0.19 -23.71 16 8 H 0.08 3.79 7.14 -2.91 -0.02 3.77 16 9 C 0.07 3.59 5.56 -21.18 -0.12 3.47 16 10 C -0.17 -8.75 8.60 22.47 0.19 -8.56 16 11 C -0.12 -5.87 9.97 22.01 0.22 -5.65 16 12 C -0.23 -10.38 10.04 22.42 0.23 -10.15 16 13 C -0.12 -5.79 8.77 22.36 0.20 -5.59 16 14 C 0.02 0.73 6.53 38.88 0.25 0.98 16 15 N -0.63 -24.10 5.07 -302.28 -1.53 -25.63 16 16 C 0.51 17.33 6.97 87.66 0.61 17.94 16 17 O -0.56 -23.12 12.29 -3.04 -0.04 -23.16 16 18 C -0.10 -2.34 2.89 -10.82 -0.03 -2.37 16 19 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 20 C -0.12 -2.45 5.61 30.82 0.17 -2.28 16 21 C -0.05 -0.93 7.38 72.22 0.53 -0.40 16 22 S -0.31 -6.83 23.23 -56.49 -1.31 -8.14 16 23 C -0.05 -1.22 6.77 72.72 0.49 -0.73 16 24 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 25 H 0.11 5.78 6.24 -2.91 -0.02 5.76 16 26 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 28 H 0.13 5.92 5.43 -2.91 -0.02 5.90 16 29 H 0.41 14.13 7.42 -92.71 -0.69 13.44 16 30 H 0.08 1.92 6.87 -2.39 -0.02 1.90 16 31 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -60.05 301.34 3.20 -56.85 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: 0.43 Total: 38.43 kcal Atomic # 6 Polarization: -38.24 SS G_CDS: 3.39 Total: -34.85 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -1.30 Total: -66.65 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.04 Total: -23.16 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.52 kcal Atomic # 16 Polarization: -6.83 SS G_CDS: -1.31 Total: -8.14 kcal Total: -60.05 3.20 -56.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334140311.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.979 kcal (2) G-P(sol) polarization free energy of solvation -60.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds