Wall clock time and date at job start Thu Apr 9 2020 13:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86799 * 120.00084 * 2 1 4 4 H 1.48494 * 109.47309 * 272.54464 * 3 2 1 5 5 H 1.48500 * 109.46922 * 32.54466 * 3 2 1 6 6 H 1.48501 * 109.47402 * 152.54175 * 3 2 1 7 7 C 1.39958 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00167 * 347.66934 * 7 2 1 9 9 C 1.41074 * 120.00228 * 167.67059 * 7 2 1 10 10 C 1.40742 * 120.29866 * 328.67164 * 9 7 2 11 11 C 1.36458 * 119.94021 * 180.02562 * 10 9 7 12 12 C 1.38868 * 120.58075 * 0.02562 * 11 10 9 13 13 C 1.38218 * 120.61224 * 359.69728 * 12 11 10 14 14 C 1.38645 * 120.03785 * 0.55995 * 13 12 11 15 15 N 1.39118 * 120.28918 * 179.74948 * 14 13 12 16 16 C 1.34780 * 120.00140 * 34.19362 * 15 14 13 17 17 O 1.21287 * 119.99787 * 355.27675 * 16 15 14 18 18 C 1.50700 * 120.00203 * 174.99236 * 16 15 14 19 19 H 1.09001 * 110.75389 * 32.32658 * 18 16 15 20 20 C 1.55135 * 110.85644 * 156.04243 * 18 16 15 21 21 C 1.53848 * 106.89965 * 160.29896 * 20 18 16 22 22 C 1.54275 * 108.92844 * 312.74296 * 21 20 18 23 23 S 1.83101 * 104.64553 * 27.95390 * 22 21 20 24 24 H 0.97002 * 119.99974 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.02685 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.70716 * 179.97438 * 11 10 9 27 27 H 1.08000 * 119.68814 * 179.97438 * 12 11 10 28 28 H 1.08004 * 119.98098 * 180.28053 * 13 12 11 29 29 H 0.97001 * 120.00524 * 214.19979 * 15 14 13 30 30 H 1.09003 * 109.97765 * 279.65981 * 20 18 16 31 31 H 1.08997 * 109.97415 * 40.93523 * 20 18 16 32 32 H 1.09005 * 109.60940 * 192.82302 * 21 20 18 33 33 H 1.09000 * 109.46649 * 72.57895 * 21 20 18 34 34 H 1.08996 * 110.40225 * 269.16619 * 22 21 20 35 35 H 1.08994 * 110.40452 * 146.74551 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4362 2.0775 -1.3986 5 1 1.4679 2.6365 0.7532 6 1 3.5659 1.4253 0.6456 7 6 2.0083 -1.2121 0.0005 8 1 1.4870 -2.1365 0.2007 9 6 3.3946 -1.2263 -0.2603 10 6 3.9652 -0.2693 -1.1201 11 6 5.3070 -0.2901 -1.3678 12 6 6.1193 -1.2500 -0.7785 13 6 5.5846 -2.1974 0.0741 14 6 4.2237 -2.2031 0.3394 15 7 3.6792 -3.1575 1.1926 16 6 4.3899 -3.6017 2.2482 17 8 5.5350 -3.2344 2.4061 18 6 3.7597 -4.5497 3.2357 19 1 3.0399 -5.2013 2.7403 20 6 4.8433 -5.3776 3.9753 21 6 4.1932 -5.9185 5.2605 22 6 3.4431 -4.7685 5.9641 23 16 2.9688 -3.6292 4.6114 24 1 -0.4850 0.8401 -0.0004 25 1 3.3415 0.4805 -1.5842 26 1 5.7408 0.4458 -2.0285 27 1 7.1794 -1.2534 -0.9849 28 1 6.2265 -2.9365 0.5304 29 1 2.7881 -3.5034 1.0279 30 1 5.1723 -6.2057 3.3475 31 1 5.6914 -4.7407 4.2266 32 1 4.9643 -6.3116 5.9231 33 1 3.4905 -6.7119 5.0059 34 1 4.0997 -4.2641 6.6729 35 1 2.5554 -5.1475 6.4704 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334590131.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:21 Heat of formation + Delta-G solvation = -19.868841 kcal Electronic energy + Delta-G solvation = -19013.890293 eV Core-core repulsion = 16102.330151 eV Total energy + Delta-G solvation = -2911.560143 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.76421 -37.61286 -35.74309 -33.93311 -33.60982 -30.45435 -30.39452 -28.40688 -25.58681 -24.83113 -22.33844 -21.32749 -20.41488 -19.66333 -17.54262 -17.42295 -16.66525 -16.49899 -15.39655 -14.96157 -14.51607 -14.25169 -14.00974 -13.87931 -13.42586 -13.09713 -12.89706 -12.56649 -12.12686 -12.07938 -11.79615 -11.72987 -11.44837 -11.10847 -10.97831 -10.87743 -10.44161 -10.03016 -9.90102 -9.84467 -9.46456 -9.37788 -8.90749 -7.65360 -7.60600 -7.16025 -6.96133 -4.49972 1.48026 2.26947 2.48260 2.66485 3.10429 3.20143 3.33854 3.44761 3.68773 3.98156 4.40265 4.53590 4.61716 4.71789 4.98479 5.04632 5.19249 5.35183 5.47515 5.49053 5.62095 5.72411 6.04907 6.06614 6.14029 6.33843 6.61136 6.72516 6.96436 7.15746 7.34745 7.47623 7.67446 7.80391 7.95824 8.19295 8.25806 8.55417 8.70667 8.83603 10.05945 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.006096 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.770789 B = 4592.316217 C = 5573.459142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.085 3.915 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.447 4.447 8 H 0.088 0.912 9 C 0.086 3.914 10 C -0.227 4.227 11 C -0.085 4.085 12 C -0.229 4.229 13 C -0.076 4.076 14 C 0.029 3.971 15 N -0.630 5.630 16 C 0.522 3.478 17 O -0.527 6.527 18 C -0.071 4.071 19 H 0.113 0.887 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.085 4.085 23 S -0.234 6.234 24 H 0.286 0.714 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.406 0.594 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -9.378 7.311 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.133 4.133 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.220 1.220 6 H -0.166 1.166 7 C -0.476 4.476 8 H 0.106 0.894 9 C 0.082 3.918 10 C -0.246 4.246 11 C -0.104 4.104 12 C -0.248 4.248 13 C -0.096 4.096 14 C -0.065 4.065 15 N -0.272 5.272 16 C 0.306 3.694 17 O -0.405 6.405 18 C -0.203 4.203 19 H 0.131 0.869 20 C -0.153 4.153 21 C -0.165 4.165 22 C -0.233 4.233 23 S -0.008 6.008 24 H 0.096 0.904 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.134 0.866 29 H 0.241 0.759 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.230 -8.032 7.507 11.780 hybrid contribution 0.194 -0.373 -0.119 0.437 sum 4.424 -8.405 7.389 12.033 Atomic orbital electron populations 1.69644 1.07904 1.30267 1.35741 1.26065 0.94797 1.01565 0.90887 0.86306 0.81155 0.79657 0.78900 1.19677 1.22024 1.16591 1.19191 0.91059 0.95518 1.41795 0.89404 1.17556 0.93315 0.90049 0.90910 1.20631 0.95122 1.04157 1.04719 1.20382 0.93882 0.97513 0.98621 1.20319 0.98023 1.00668 1.05839 1.20784 0.93611 0.98659 0.96536 1.17556 0.92315 0.96874 0.99756 1.42801 1.19262 1.39881 1.25250 1.19589 0.86615 0.82127 0.81056 1.90639 1.17340 1.57691 1.74789 1.24090 1.00640 0.98659 0.96892 0.86860 1.22530 0.98059 0.99720 0.94991 1.22296 1.00120 0.97675 0.96407 1.24078 1.03280 0.97380 0.98560 1.88127 1.72305 1.37469 1.02938 0.90404 0.87871 0.88770 0.88521 0.86618 0.75877 0.89557 0.88592 0.89698 0.90623 0.88885 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.35 13.93 55.55 0.77 -20.58 16 2 C 0.09 2.22 5.47 -17.33 -0.09 2.13 16 3 Si 0.91 21.22 24.41 -169.99 -4.15 17.07 16 4 H -0.27 -6.03 6.67 56.52 0.38 -5.65 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.93 6.68 56.52 0.38 -5.55 16 7 C -0.45 -11.66 9.14 -37.86 -0.35 -12.00 16 8 H 0.09 2.31 7.09 -52.49 -0.37 1.94 16 9 C 0.09 2.16 5.14 -106.65 -0.55 1.61 16 10 C -0.23 -5.48 6.95 -39.28 -0.27 -5.75 16 11 C -0.09 -1.88 9.97 -39.99 -0.40 -2.28 16 12 C -0.23 -4.98 10.04 -39.36 -0.39 -5.38 16 13 C -0.08 -1.73 8.69 -39.44 -0.34 -2.07 16 14 C 0.03 0.67 6.35 -83.18 -0.53 0.15 16 15 N -0.63 -12.85 5.02 -9.48 -0.05 -12.89 16 16 C 0.52 9.91 6.95 -10.98 -0.08 9.83 16 17 O -0.53 -11.43 13.25 5.55 0.07 -11.36 16 18 C -0.07 -1.03 3.63 -26.75 -0.10 -1.13 16 19 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 20 C -0.11 -1.33 5.72 -25.16 -0.14 -1.47 16 21 C -0.13 -1.12 6.38 -25.62 -0.16 -1.29 16 22 C -0.08 -0.87 7.34 37.82 0.28 -0.60 16 23 S -0.23 -3.61 22.71 -107.50 -2.44 -6.05 16 24 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 25 H 0.10 2.46 4.43 -52.48 -0.23 2.23 16 26 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.12 2.58 6.15 -52.48 -0.32 2.25 16 29 H 0.41 7.58 7.59 -40.82 -0.31 7.27 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.31 7.33 -51.93 -0.38 0.93 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 297.38 15.07 4.48 4.48 Total: -1.00 -29.77 297.38 -8.62 -38.40 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.18 Total: 9.19 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -3.13 Total: -18.25 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.73 Total: -33.47 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.15 Total: 17.07 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.44 Total: -6.05 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.77 -8.62 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334590131.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.526 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds