Wall clock time and date at job start Thu Apr 9 2020 13:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 5 5 C 1.34781 * 119.99874 * 85.00543 * 4 2 1 6 6 O 1.21689 * 120.00041 * 359.97438 * 5 4 2 7 7 C 1.46375 * 119.99822 * 179.97438 * 5 4 2 8 8 H 1.07998 * 120.00236 * 359.97438 * 7 5 4 9 9 C 1.40049 * 119.99715 * 179.97438 * 7 5 4 10 10 N 1.30676 * 120.00103 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 120.00089 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46812 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47229 * 120.00151 * 11 9 7 14 14 H 1.48496 * 109.47023 * 240.00274 * 11 9 7 15 15 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 16 16 C 1.34000 * 124.93194 * 259.99899 * 15 2 1 17 17 C 1.46776 * 106.19292 * 179.97438 * 16 15 2 18 18 C 1.39473 * 134.34918 * 179.97438 * 17 16 15 19 19 C 1.36722 * 119.75854 * 179.97438 * 18 17 16 20 20 C 1.38740 * 120.44236 * 0.03793 * 19 18 17 21 21 C 1.38039 * 120.65110 * 359.97438 * 20 19 18 22 22 F 1.35101 * 120.11175 * 180.02562 * 21 20 19 23 23 C 1.39138 * 119.77668 * 359.97438 * 21 20 19 24 24 O 1.34441 * 124.92957 * 79.69620 * 15 2 1 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 0.97002 * 120.00410 * 264.99761 * 4 2 1 29 29 H 0.96998 * 120.00178 * 180.02562 * 10 9 7 30 30 H 1.08000 * 126.90586 * 359.96199 * 16 15 2 31 31 H 1.07994 * 120.11984 * 0.02562 * 18 17 16 32 32 H 1.08005 * 119.77584 * 180.02562 * 19 18 17 33 33 H 1.07995 * 119.67212 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8573 1.1623 -2.4119 7 6 2.6354 -0.7083 -3.5521 8 1 2.8930 -1.7560 -3.5034 9 6 2.7687 -0.0098 -4.7586 10 7 2.4576 1.2580 -4.8175 11 14 3.3913 -0.8904 -6.2839 12 1 3.6712 -2.3113 -5.9555 13 1 2.3598 -0.8232 -7.3500 14 1 4.6373 -0.2369 -6.7588 15 6 2.0323 -0.7104 1.2305 16 6 2.4680 -0.1033 2.3428 17 6 2.8535 -1.1744 3.2694 18 6 3.3715 -1.2040 4.5640 19 6 3.6281 -2.4049 5.1650 20 6 3.3773 -3.5939 4.4954 21 6 2.8650 -3.5851 3.2136 22 9 2.6244 -4.7494 2.5718 23 6 2.5961 -2.3732 2.5852 24 8 2.1030 -2.0453 1.3737 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.2490 -1.6319 -1.1526 29 1 2.5496 1.7418 -5.6532 30 1 2.5243 0.9603 2.5216 31 1 3.5685 -0.2817 5.0901 32 1 4.0289 -2.4282 6.1676 33 1 3.5842 -4.5355 4.9820 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334631721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:27 Heat of formation + Delta-G solvation = -58.751175 kcal Electronic energy + Delta-G solvation = -20496.828048 eV Core-core repulsion = 17017.368664 eV Total energy + Delta-G solvation = -3479.459383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.98063 -42.50142 -38.13123 -37.45916 -34.48031 -32.62525 -32.31303 -30.30848 -30.15026 -28.51860 -26.18455 -23.94385 -23.08761 -21.75388 -20.95404 -19.57905 -17.97589 -17.57315 -17.27881 -16.51430 -16.07699 -15.52405 -15.42991 -15.22694 -14.85262 -14.25930 -13.78769 -13.34218 -13.28129 -13.05280 -12.91866 -12.43159 -12.21345 -12.03004 -11.77984 -11.72381 -11.47709 -11.08691 -11.05256 -10.87795 -10.50326 -10.22573 -10.01530 -8.90597 -8.77287 -8.18462 -7.72419 -7.67948 -6.24073 -4.69271 0.65290 1.08469 2.27438 2.54168 3.11633 3.20265 3.25080 3.41954 3.98046 4.06074 4.24387 4.52152 4.55420 4.70745 4.84017 4.99592 5.04608 5.19806 5.51779 5.58889 5.66605 5.71064 5.80911 5.90480 5.94282 6.08949 6.16613 6.27973 6.34712 6.50717 6.66834 7.11044 7.40070 7.81660 7.96148 8.27165 8.98142 9.41291 10.52150 10.70149 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.004092 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.721505 B = 6840.438370 C = 7431.226583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.225 3.775 3 H 0.111 0.889 4 N -0.762 5.762 5 C 0.556 3.444 6 O -0.578 6.578 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.088 3.912 10 N -0.766 5.766 11 Si 0.908 3.092 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.066 3.934 16 C -0.217 4.217 17 C -0.094 4.094 18 C -0.084 4.084 19 C -0.112 4.112 20 C -0.138 4.138 21 C 0.117 3.883 22 F -0.133 7.133 23 C 0.012 3.988 24 O -0.177 6.177 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.386 0.614 29 H 0.268 0.732 30 H 0.164 0.836 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.058 -6.428 17.904 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.118 3.882 3 H 0.129 0.871 4 N -0.418 5.418 5 C 0.361 3.639 6 O -0.461 6.461 7 C -0.579 4.579 8 H 0.087 0.913 9 C -0.132 4.132 10 N -0.395 5.395 11 Si 0.733 3.267 12 H -0.187 1.187 13 H -0.201 1.201 14 H -0.201 1.201 15 C 0.017 3.983 16 C -0.236 4.236 17 C -0.095 4.095 18 C -0.102 4.102 19 C -0.130 4.130 20 C -0.157 4.157 21 C 0.097 3.903 22 F -0.112 7.112 23 C -0.037 4.037 24 O -0.077 6.077 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.218 0.782 29 H 0.079 0.921 30 H 0.182 0.818 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.737 -5.616 17.501 18.395 hybrid contribution 0.416 -1.057 -0.721 1.345 sum 1.152 -6.673 16.780 18.095 Atomic orbital electron populations 1.22232 0.94681 1.02172 1.02631 1.19359 0.93837 0.95681 0.79299 0.87097 1.46305 1.73320 1.13326 1.08830 1.18255 0.77858 0.86390 0.81399 1.90601 1.54985 1.16277 1.84263 1.20908 1.46550 0.97314 0.93118 0.91265 1.25704 0.93275 0.94482 0.99740 1.70022 1.35007 1.08188 1.26277 0.86298 0.78807 0.80362 0.81229 1.18726 1.20103 1.20113 1.23213 0.97612 0.79469 0.97973 1.22216 1.08850 0.99611 0.92931 1.19835 1.02192 0.91856 0.95606 1.20341 0.98437 0.98810 0.92618 1.20571 1.01020 0.90986 1.00400 1.20866 1.02235 1.00513 0.92096 1.16537 1.04581 0.77611 0.91530 1.91525 1.92348 1.45841 1.81447 1.19585 1.03324 0.94654 0.86112 1.84051 1.68060 1.24449 1.31158 0.90339 0.92654 0.92520 0.78161 0.92082 0.81808 0.84855 0.84490 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.47 37.16 0.35 -2.37 16 2 C 0.22 4.25 3.01 -69.08 -0.21 4.05 16 3 H 0.11 2.21 7.55 -51.93 -0.39 1.82 16 4 N -0.76 -17.17 5.06 -56.34 -0.29 -17.45 16 5 C 0.56 15.52 7.71 -12.98 -0.10 15.42 16 6 O -0.58 -18.01 14.68 5.20 0.08 -17.93 16 7 C -0.54 -15.26 9.54 -35.63 -0.34 -15.60 16 8 H 0.07 1.82 7.85 -52.49 -0.41 1.40 16 9 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16 10 N -0.77 -22.63 11.83 55.55 0.66 -21.97 16 11 Si 0.91 20.10 29.56 -169.99 -5.02 15.07 16 12 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 15 C 0.07 1.11 6.05 -35.80 -0.22 0.89 16 16 C -0.22 -3.12 10.99 -37.62 -0.41 -3.53 16 17 C -0.09 -1.29 6.40 -105.17 -0.67 -1.96 16 18 C -0.08 -0.87 10.05 -39.67 -0.40 -1.27 16 19 C -0.11 -0.99 9.98 -39.94 -0.40 -1.39 16 20 C -0.14 -1.40 9.99 -39.47 -0.39 -1.79 16 21 C 0.12 1.59 7.32 -39.32 -0.29 1.31 16 22 F -0.13 -1.93 17.27 2.25 0.04 -1.90 16 23 C 0.01 0.18 7.40 -38.43 -0.28 -0.10 16 24 O -0.18 -3.08 10.20 3.82 0.04 -3.04 16 25 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.39 8.18 8.26 -40.82 -0.34 7.84 16 29 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 30 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 301.93 15.07 4.55 4.55 Total: -1.00 -33.46 301.93 -6.64 -40.10 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -3.23 Total: 6.59 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.46 Total: -4.02 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.37 Total: -39.42 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: 0.12 Total: -20.97 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.46 -6.64 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334631721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.652 kcal (2) G-P(sol) polarization free energy of solvation -33.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds