Wall clock time and date at job start Thu Apr 9 2020 13:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37100 * 119.99482 * 2 1 4 4 H 1.08000 * 119.99303 * 142.64254 * 3 2 1 5 5 C 1.38946 * 120.00254 * 322.63415 * 3 2 1 6 6 N 1.31409 * 120.00134 * 158.46727 * 5 3 2 7 7 Si 1.86804 * 120.00037 * 338.46842 * 5 3 2 8 8 H 1.48508 * 109.46863 * 95.71732 * 7 5 3 9 9 H 1.48492 * 109.47344 * 215.71347 * 7 5 3 10 10 H 1.48499 * 109.47224 * 335.71934 * 7 5 3 11 11 C 1.34774 * 119.99991 * 179.72329 * 2 1 3 12 12 O 1.21297 * 119.99877 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00173 * 359.97438 * 11 2 1 14 14 C 1.50699 * 109.47353 * 180.02562 * 13 11 2 15 15 C 1.33971 * 126.90522 * 265.02886 * 14 13 11 16 16 O 1.34480 * 110.15456 * 179.97438 * 15 14 13 17 17 C 1.34812 * 110.88733 * 359.97438 * 16 15 14 18 18 C 1.38928 * 133.46089 * 180.02562 * 17 16 15 19 19 C 1.38054 * 119.79367 * 179.97438 * 18 17 16 20 20 F 1.35102 * 119.68794 * 179.97438 * 19 18 17 21 21 C 1.38949 * 120.62956 * 359.97438 * 19 18 17 22 22 C 1.36717 * 120.39508 * 0.03919 * 21 19 18 23 23 C 1.39408 * 119.74612 * 359.67573 * 22 21 19 24 24 H 1.08997 * 109.47191 * 265.40987 * 1 2 3 25 25 H 1.09000 * 109.47045 * 25.41611 * 1 2 3 26 26 H 1.08999 * 109.46701 * 145.41029 * 1 2 3 27 27 H 0.96997 * 120.00338 * 180.02562 * 6 5 3 28 28 H 1.09006 * 109.47097 * 299.99895 * 13 11 2 29 29 H 1.08997 * 109.47185 * 59.99918 * 13 11 2 30 30 H 1.07995 * 124.92216 * 359.94901 * 15 14 13 31 31 H 1.07994 * 120.10450 * 359.93092 * 18 17 16 32 32 H 1.08007 * 119.79998 * 180.02562 * 21 19 18 33 33 H 1.07998 * 120.12271 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.0643 1.2833 0.5676 5 6 1.6695 2.2672 -0.7303 6 7 2.0452 3.4882 -0.4224 7 14 0.4889 1.9833 -2.1498 8 1 -0.9074 2.1567 -1.6745 9 1 0.7691 2.9625 -3.2302 10 1 0.6660 0.6048 -2.6728 11 6 2.1389 -1.1672 0.0056 12 8 3.3519 -1.1671 0.0061 13 6 1.3855 -2.4722 0.0125 14 6 2.3648 -3.6177 0.0186 15 6 2.8170 -4.2951 -1.0451 16 8 3.6797 -5.2496 -0.6540 17 6 3.8322 -5.2402 0.6854 18 6 4.5896 -6.0020 1.5664 19 6 4.5317 -5.7436 2.9213 20 9 5.2687 -6.4861 3.7762 21 6 3.7226 -4.7271 3.4142 22 6 2.9702 -3.9674 2.5624 23 6 3.0210 -4.2105 1.1906 24 1 -0.3633 -0.0822 1.0243 25 1 -0.3633 0.9282 -0.4411 26 1 -0.3633 -0.8460 -0.5834 27 1 1.7092 4.2421 -0.9319 28 1 0.7592 -2.5255 0.9031 29 1 0.7585 -2.5345 -0.8769 30 1 2.5299 -4.1028 -2.0683 31 1 5.2211 -6.7943 1.1926 32 1 3.6879 -4.5363 4.4768 33 1 2.3426 -3.1787 2.9503 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336078344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:33 Heat of formation + Delta-G solvation = -32.763147 kcal Electronic energy + Delta-G solvation = -20731.861188 eV Core-core repulsion = 17253.528730 eV Total energy + Delta-G solvation = -3478.332458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.99855 -42.40405 -38.69952 -37.62049 -34.93972 -33.55939 -32.06955 -30.75095 -29.50708 -27.90040 -26.42554 -24.51784 -23.56534 -22.33896 -20.58049 -18.84251 -17.75417 -17.23590 -17.09433 -16.66372 -16.35969 -15.92800 -15.54474 -15.34018 -14.96331 -14.65956 -14.40155 -13.85996 -13.52690 -12.93412 -12.93087 -12.72071 -12.41292 -12.25852 -12.00445 -11.92113 -11.76347 -11.37131 -10.98502 -10.78699 -10.40701 -9.96452 -9.87487 -9.10967 -8.71946 -8.54849 -7.99663 -7.77566 -6.42357 -3.99722 0.80500 1.22360 2.37976 2.72467 2.98981 3.18155 3.21380 3.55425 3.68556 4.10808 4.25156 4.43396 4.49833 4.65894 4.85237 4.91532 4.97797 5.21744 5.30324 5.46392 5.59774 5.66844 5.70269 5.82381 5.90163 5.99098 6.09065 6.16898 6.23602 6.28249 6.46673 6.60527 7.15433 7.51304 8.25127 8.47910 8.93910 9.28357 9.73639 10.69888 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.031827 B = 0.004381 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.546022 B = 6390.157194 C = 6775.029899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.472 5.472 3 C -0.317 4.317 4 H 0.105 0.895 5 C 0.058 3.942 6 N -0.864 5.864 7 Si 0.881 3.119 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.265 1.265 11 C 0.463 3.537 12 O -0.556 6.556 13 C -0.072 4.072 14 C -0.133 4.133 15 C 0.008 3.992 16 O -0.190 6.190 17 C 0.077 3.923 18 C -0.147 4.147 19 C 0.119 3.881 20 F -0.136 7.136 21 C -0.170 4.170 22 C -0.032 4.032 23 C -0.118 4.118 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.274 0.726 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.209 0.791 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 -16.690 2.411 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.195 5.195 3 C -0.444 4.444 4 H 0.122 0.878 5 C -0.147 4.147 6 N -0.501 5.501 7 Si 0.709 3.291 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.190 1.190 11 C 0.251 3.749 12 O -0.437 6.437 13 C -0.112 4.112 14 C -0.134 4.134 15 C -0.056 4.056 16 O -0.091 6.091 17 C 0.029 3.971 18 C -0.166 4.166 19 C 0.099 3.901 20 F -0.114 7.114 21 C -0.189 4.189 22 C -0.050 4.050 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.225 0.775 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.045 -16.667 2.240 17.091 hybrid contribution -0.660 0.195 -0.678 0.966 sum -3.705 -16.472 1.562 16.956 Atomic orbital electron populations 1.22016 0.83457 1.01594 1.01031 1.43686 1.03976 1.05658 1.66157 1.19049 1.10312 0.85456 1.29542 0.87781 1.25374 0.97479 0.94767 0.97111 1.69751 1.43888 0.98123 1.38313 0.86905 0.80161 0.78936 0.83096 1.20281 1.21473 1.18976 1.20130 0.88252 0.84288 0.82275 1.90592 1.13746 1.86776 1.52540 1.20098 0.96322 0.90801 1.03989 1.20567 1.02457 0.99234 0.91161 1.23683 0.92383 0.89926 0.99612 1.83990 1.54938 1.49688 1.20514 1.19014 0.98648 0.97397 0.82080 1.19514 1.03803 1.03405 0.89921 1.17057 0.94049 0.92675 0.86268 1.91501 1.75103 1.75345 1.69468 1.20699 0.99682 0.97213 1.01290 1.20148 0.96962 0.97333 0.90518 1.19804 1.00090 0.97568 0.94423 0.92955 0.91609 0.92712 0.91575 0.88908 0.88780 0.77466 0.84047 0.84186 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 8.79 59.85 0.53 1.68 16 2 N -0.47 -11.06 2.58 -122.19 -0.32 -11.37 16 3 C -0.32 -8.87 9.37 -14.93 -0.14 -9.01 16 4 H 0.10 3.31 7.90 -52.49 -0.41 2.90 16 5 C 0.06 1.59 5.29 -17.47 -0.09 1.50 16 6 N -0.86 -24.82 13.96 55.50 0.77 -24.05 16 7 Si 0.88 20.03 24.97 -169.99 -4.24 15.78 16 8 H -0.28 -5.78 6.70 56.52 0.38 -5.40 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 C 0.46 10.31 7.62 -10.99 -0.08 10.23 16 12 O -0.56 -14.85 15.90 5.54 0.09 -14.76 16 13 C -0.07 -1.14 4.87 -29.04 -0.14 -1.28 16 14 C -0.13 -2.12 4.85 -102.65 -0.50 -2.62 16 15 C 0.01 0.12 11.89 29.23 0.35 0.47 16 16 O -0.19 -2.86 10.58 3.82 0.04 -2.82 16 17 C 0.08 1.17 7.41 -38.48 -0.29 0.88 16 18 C -0.15 -1.95 10.04 -39.39 -0.40 -2.35 16 19 C 0.12 1.55 7.28 -39.39 -0.29 1.26 16 20 F -0.14 -1.71 17.25 2.25 0.04 -1.67 16 21 C -0.17 -2.15 9.96 -39.87 -0.40 -2.55 16 22 C -0.03 -0.45 10.05 -39.70 -0.40 -0.85 16 23 C -0.12 -1.88 6.38 -105.15 -0.67 -2.56 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 1.30 3.43 -51.93 -0.18 1.13 16 26 H 0.05 0.80 6.64 -51.93 -0.34 0.46 16 27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 29 H 0.09 1.23 7.41 -51.93 -0.38 0.85 16 30 H 0.21 2.19 8.06 -52.49 -0.42 1.76 16 31 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 33 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 292.13 15.07 4.40 4.40 Total: -1.00 -33.32 292.13 -4.75 -38.07 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.02 Total: 1.60 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.52 Total: -5.18 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.46 Total: -35.42 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.13 Total: -17.58 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.24 Total: 15.78 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.32 -4.75 -38.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336078344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.306 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds