Wall clock time and date at job start Thu Apr 9 2020 13:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00065 * 2 1 4 4 H 1.48497 * 109.46950 * 269.99820 * 3 2 1 5 5 H 1.48500 * 109.46920 * 29.99625 * 3 2 1 6 6 H 1.48498 * 109.47241 * 149.99790 * 3 2 1 7 7 C 1.37878 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99584 * 187.04957 * 7 2 1 9 9 C 1.50698 * 120.00208 * 6.77696 * 7 2 1 10 10 C 1.52999 * 115.55051 * 279.78580 * 9 7 2 11 11 S 1.81393 * 109.47096 * 294.85033 * 10 9 7 12 12 O 1.42098 * 110.54267 * 295.71079 * 11 10 9 13 13 O 1.42100 * 110.54740 * 72.46791 * 11 10 9 14 14 N 1.65607 * 104.44732 * 184.08742 * 11 10 9 15 15 C 1.47029 * 125.64646 * 89.99956 * 14 11 10 16 16 C 1.54322 * 107.27070 * 181.02248 * 15 14 11 17 17 C 1.55163 * 102.94255 * 22.19246 * 16 15 14 18 18 H 1.08996 * 111.00411 * 82.56990 * 17 16 15 19 19 F 1.39897 * 111.00218 * 206.42756 * 17 16 15 20 20 C 1.47422 * 125.64994 * 269.68849 * 14 11 10 21 21 C 1.53006 * 117.49999 * 134.07841 * 9 7 2 22 22 C 1.53007 * 117.49560 * 65.45608 * 9 7 2 23 23 H 0.96997 * 120.00159 * 5.02926 * 1 2 3 24 24 H 1.09001 * 109.46648 * 54.84908 * 10 9 7 25 25 H 1.09006 * 109.46975 * 174.84587 * 10 9 7 26 26 H 1.08998 * 109.88271 * 300.44126 * 15 14 11 27 27 H 1.09000 * 109.88149 * 61.60363 * 15 14 11 28 28 H 1.08996 * 110.72315 * 140.55640 * 16 15 14 29 29 H 1.09007 * 110.72017 * 263.83227 * 16 15 14 30 30 H 1.09001 * 110.36679 * 274.74828 * 20 14 11 31 31 H 1.09003 * 110.36616 * 37.07422 * 20 14 11 32 32 H 1.08995 * 117.49341 * 359.97438 * 21 9 7 33 33 H 1.08991 * 117.50068 * 145.02297 * 21 9 7 34 34 H 1.08999 * 117.49607 * 214.97745 * 22 9 7 35 35 H 1.08993 * 117.50254 * 0.02562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0784 -1.1975 0.1153 9 6 1.2589 -2.4947 -0.1529 10 6 0.5910 -3.0261 1.1168 11 16 1.8639 -3.4507 2.3374 12 8 2.6746 -4.5166 1.8622 13 8 2.4458 -2.2738 2.8811 14 7 1.0210 -4.1106 3.6010 15 6 0.6954 -5.5352 3.7627 16 6 -0.1174 -5.6742 5.0672 17 6 -0.6889 -4.2466 5.2743 18 1 -1.5904 -4.0968 4.6803 19 9 -0.9356 -3.9968 6.6285 20 6 0.4785 -3.3679 4.7531 21 6 1.8238 -3.5210 -1.1371 22 6 0.5491 -2.7492 -1.4842 23 1 -0.4850 0.8368 -0.0736 24 1 -0.0667 -2.2608 1.5289 25 1 0.0078 -3.9150 0.8758 26 1 0.0998 -5.8778 2.9166 27 1 1.6129 -6.1195 3.8336 28 1 -0.9229 -6.3980 4.9444 29 1 0.5310 -5.9542 5.8976 30 1 1.2416 -3.2513 5.5227 31 1 0.1069 -2.3937 4.4354 32 1 2.7344 -3.2552 -1.6739 33 1 1.7197 -4.5750 -0.8801 34 1 -0.3936 -3.2956 -1.4555 35 1 0.6217 -1.9762 -2.2492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336302654.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:37 Heat of formation + Delta-G solvation = -96.205170 kcal Electronic energy + Delta-G solvation = -20524.303320 eV Core-core repulsion = 17178.663761 eV Total energy + Delta-G solvation = -3345.639559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.71994 -38.00295 -36.80326 -36.32227 -35.13615 -32.09038 -30.52174 -28.80888 -28.19059 -25.49870 -22.62970 -21.49779 -21.26983 -19.59592 -18.53561 -17.26579 -17.16735 -16.41999 -15.52258 -15.13606 -14.98773 -14.74663 -14.61314 -14.18729 -13.81939 -13.55380 -13.21932 -13.12783 -12.60250 -11.98606 -11.86603 -11.76556 -11.43850 -11.32461 -11.17530 -11.07807 -10.91710 -10.81212 -10.78652 -10.62173 -10.51132 -10.16463 -9.75951 -9.01211 -8.89448 -8.60803 -8.12892 -6.18556 -4.28564 0.92662 3.23497 3.28255 3.35013 3.42641 4.08568 4.29598 4.35911 4.39313 4.58264 4.71787 4.93778 5.08633 5.09031 5.16678 5.38992 5.42021 5.52039 5.60970 5.69064 5.82326 5.88448 5.96232 6.13352 6.23165 6.34041 6.53577 6.56985 6.66384 6.93108 7.19162 7.32146 7.77370 8.15551 8.77719 9.43677 10.90123 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.021566 B = 0.006488 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.046937 B = 4314.753492 C = 4855.714787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.082 3.918 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.069 0.931 9 C 0.043 3.957 10 C -0.551 4.551 11 S 2.618 3.382 12 O -0.967 6.967 13 O -0.940 6.940 14 N -1.022 6.022 15 C 0.121 3.879 16 C -0.153 4.153 17 C 0.076 3.924 18 H 0.104 0.896 19 F -0.204 7.204 20 C 0.101 3.899 21 C -0.208 4.208 22 C -0.145 4.145 23 H 0.263 0.737 24 H 0.137 0.863 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 -9.776 7.481 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.123 4.123 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.087 0.913 9 C 0.040 3.960 10 C -0.685 4.685 11 S 2.718 3.282 12 O -0.958 6.958 13 O -0.931 6.931 14 N -0.858 5.858 15 C -0.005 4.005 16 C -0.192 4.192 17 C 0.038 3.962 18 H 0.122 0.878 19 F -0.185 7.185 20 C -0.026 4.026 21 C -0.245 4.245 22 C -0.184 4.184 23 H 0.073 0.927 24 H 0.155 0.845 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.148 -9.515 7.542 12.543 hybrid contribution -0.484 0.936 -0.195 1.072 sum -3.631 -8.578 7.346 11.864 Atomic orbital electron populations 1.69985 1.06032 1.27352 1.47680 1.24938 0.94804 0.99264 0.93316 0.86581 0.80585 0.82849 0.78217 1.20435 1.20970 1.19132 1.20561 0.93441 0.88640 1.52470 0.91308 1.18304 0.98395 0.94275 0.84980 1.30007 1.15815 1.08502 1.14143 1.05038 0.75955 0.73463 0.73783 1.93491 1.65106 1.56133 1.81021 1.93548 1.74202 1.48729 1.76575 1.59140 1.74915 1.14999 1.36738 1.21599 0.99530 0.82206 0.97172 1.23224 1.00568 0.96586 0.98789 1.22849 0.99375 0.96012 0.77948 0.87789 1.92806 1.95683 1.95317 1.34683 1.22424 0.95061 0.95636 0.89432 1.23174 0.98357 0.95914 1.07043 1.22588 0.93254 1.01393 1.01163 0.92719 0.84528 0.88413 0.91277 0.90571 0.89150 0.89405 0.90244 0.89174 0.89451 0.90599 0.91478 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.76 13.06 55.43 0.72 -23.03 16 2 C 0.08 2.21 5.42 -17.82 -0.10 2.11 16 3 Si 0.89 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.93 8.07 -34.44 -0.28 -14.20 16 8 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 9 C 0.04 1.03 1.25 -155.66 -0.19 0.84 16 10 C -0.55 -11.39 6.03 37.16 0.22 -11.17 16 11 S 2.62 52.99 5.41 -107.50 -0.58 52.41 16 12 O -0.97 -20.98 17.60 -57.54 -1.01 -21.99 16 13 O -0.94 -22.50 17.15 -57.54 -0.99 -23.49 16 14 N -1.02 -15.70 3.62 -111.29 -0.40 -16.10 16 15 C 0.12 1.43 6.89 -3.06 -0.02 1.41 16 16 C -0.15 -1.42 6.76 -24.89 -0.17 -1.59 16 17 C 0.08 0.82 4.88 -24.46 -0.12 0.71 16 18 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 19 F -0.20 -2.48 17.23 2.25 0.04 -2.44 16 20 C 0.10 1.38 6.70 -2.41 -0.02 1.37 16 21 C -0.21 -4.46 9.96 -26.72 -0.27 -4.73 16 22 C -0.14 -3.22 9.72 -26.72 -0.26 -3.48 16 23 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 24 H 0.14 2.96 8.06 -51.92 -0.42 2.54 16 25 H 0.10 1.68 8.09 -51.92 -0.42 1.26 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -31.99 312.48 -8.77 -40.75 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.03 Total: 1.68 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -1.20 Total: -28.75 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.32 Total: -39.13 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -2.00 Total: -45.48 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 52.99 SS G_CDS: -0.58 Total: 52.41 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.99 -8.77 -40.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336302654.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.454 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds