Wall clock time and date at job start Thu Apr 9 2020 13:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48503 * 109.47075 * 269.99706 * 3 2 1 5 5 H 1.48499 * 109.47379 * 29.99653 * 3 2 1 6 6 H 1.48501 * 109.47219 * 150.00085 * 3 2 1 7 7 C 1.37871 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99950 * 173.00434 * 7 2 1 9 9 C 1.50700 * 120.00512 * 353.00023 * 7 2 1 10 10 C 1.53001 * 115.54587 * 84.78326 * 9 7 2 11 11 S 1.81398 * 109.47019 * 39.92284 * 10 9 7 12 12 O 1.42108 * 110.54400 * 62.30722 * 11 10 9 13 13 O 1.42103 * 110.54478 * 285.55325 * 11 10 9 14 14 N 1.65608 * 104.44911 * 173.92976 * 11 10 9 15 15 C 1.47020 * 125.64578 * 89.99897 * 14 11 10 16 16 C 1.54325 * 107.26979 * 180.79175 * 15 14 11 17 17 C 1.55159 * 102.94114 * 22.19427 * 16 15 14 18 18 H 1.09002 * 111.00581 * 206.42216 * 17 16 15 19 19 F 1.39904 * 111.00310 * 82.56931 * 17 16 15 20 20 C 1.47420 * 125.64566 * 269.69120 * 14 11 10 21 21 C 1.52993 * 117.52166 * 230.49408 * 9 7 2 22 22 C 1.53001 * 60.00351 * 107.47758 * 21 9 7 23 23 H 0.96999 * 120.00323 * 5.03405 * 1 2 3 24 24 H 1.08994 * 109.47514 * 279.91507 * 10 9 7 25 25 H 1.09003 * 109.46780 * 159.92169 * 10 9 7 26 26 H 1.08995 * 109.88360 * 300.21229 * 15 14 11 27 27 H 1.08999 * 109.88335 * 61.37738 * 15 14 11 28 28 H 1.08998 * 110.71887 * 140.55334 * 16 15 14 29 29 H 1.08995 * 110.72298 * 263.83371 * 16 15 14 30 30 H 1.09002 * 110.36559 * 274.97365 * 20 14 11 31 31 H 1.08996 * 110.37415 * 37.29917 * 20 14 11 32 32 H 1.09007 * 117.49668 * 214.96942 * 21 9 7 33 33 H 1.08997 * 117.50099 * 359.97438 * 21 9 7 34 34 H 1.08992 * 117.49821 * 252.50978 * 22 21 9 35 35 H 1.08995 * 117.51466 * 107.48099 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0785 -1.1976 -0.1134 9 6 1.2595 -2.4942 0.1602 10 6 0.6799 -3.0849 -1.1268 11 16 1.8646 -2.8607 -2.4820 12 8 3.0720 -3.5590 -2.2097 13 8 1.8826 -1.5057 -2.9097 14 7 1.1962 -3.6820 -3.7553 15 6 0.2760 -3.1153 -4.7521 16 6 -0.0971 -4.2504 -5.7287 17 6 0.1871 -5.5303 -4.8989 18 1 0.4196 -6.3738 -5.5489 19 9 -0.8885 -5.8306 -4.0562 20 6 1.4304 -5.1006 -4.0806 21 6 1.7652 -3.4731 1.2216 22 6 0.4654 -2.6995 1.4518 23 1 -0.4850 0.8368 -0.0737 24 1 -0.2529 -2.5771 -1.3718 25 1 0.4880 -4.1484 -0.9841 26 1 -0.6209 -2.7413 -4.2583 27 1 0.7678 -2.3072 -5.2935 28 1 -1.1509 -4.1938 -6.0014 29 1 0.5343 -4.2185 -6.6166 30 1 2.3346 -5.2082 -4.6798 31 1 1.5066 -5.6916 -3.1679 32 1 1.6852 -4.5380 1.0031 33 1 2.6373 -3.1770 1.8046 34 1 0.4823 -1.8944 2.1863 35 1 -0.4699 -3.2551 1.3847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336302655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:39 Heat of formation + Delta-G solvation = -95.216117 kcal Electronic energy + Delta-G solvation = -20792.582304 eV Core-core repulsion = 17446.985634 eV Total energy + Delta-G solvation = -3345.596671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.65111 -37.75983 -36.69893 -36.12358 -34.91680 -32.03995 -30.52433 -28.90326 -28.13598 -25.45755 -22.55786 -21.33232 -21.18045 -19.50925 -18.45819 -17.22870 -16.87545 -16.35954 -15.44123 -15.07307 -14.96547 -14.77694 -14.55641 -14.15240 -13.73803 -13.25209 -13.09651 -12.80144 -12.54128 -12.16345 -11.78464 -11.53534 -11.22456 -11.12512 -11.09788 -10.98429 -10.94471 -10.89106 -10.72541 -10.50452 -10.33683 -10.10106 -9.70708 -8.97345 -8.72514 -8.51738 -8.07544 -6.14405 -4.29329 1.11922 3.33649 3.40987 3.43648 3.46878 4.11156 4.26427 4.40949 4.53966 4.67325 4.84140 5.02899 5.15907 5.19121 5.22832 5.29667 5.50514 5.58748 5.72247 5.77272 5.89081 5.96631 6.04602 6.23967 6.35076 6.41476 6.63724 6.67400 6.73428 6.98832 7.20461 7.41146 7.79801 8.20279 8.79270 9.47705 10.93158 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.006927 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.835490 B = 4041.195608 C = 4438.739991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.097 3.903 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.050 3.950 10 C -0.557 4.557 11 S 2.636 3.364 12 O -0.970 6.970 13 O -0.935 6.935 14 N -1.025 6.025 15 C 0.119 3.881 16 C -0.153 4.153 17 C 0.075 3.925 18 H 0.104 0.896 19 F -0.203 7.203 20 C 0.098 3.902 21 C -0.204 4.204 22 C -0.144 4.144 23 H 0.265 0.735 24 H 0.127 0.873 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 -9.957 -10.137 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.110 4.110 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.047 3.953 10 C -0.689 4.689 11 S 2.735 3.265 12 O -0.961 6.961 13 O -0.925 6.925 14 N -0.861 5.861 15 C -0.007 4.007 16 C -0.192 4.192 17 C 0.037 3.963 18 H 0.121 0.879 19 F -0.184 7.184 20 C -0.028 4.028 21 C -0.241 4.241 22 C -0.183 4.183 23 H 0.075 0.925 24 H 0.145 0.855 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.460 -9.320 -10.055 13.787 hybrid contribution -0.461 0.576 0.315 0.802 sum -1.921 -8.744 -9.740 13.229 Atomic orbital electron populations 1.69957 1.06192 1.27461 1.46401 1.24903 0.94726 0.99298 0.92080 0.86596 0.80126 0.82739 0.78896 1.19600 1.20963 1.19410 1.20590 0.93647 0.88807 1.55109 0.91305 1.18187 0.98790 0.94003 0.84278 1.29981 1.16494 1.06341 1.16109 1.04446 0.75333 0.73152 0.73574 1.93472 1.42261 1.75213 1.85109 1.93529 1.86278 1.32970 1.79764 1.59343 1.63062 1.20015 1.43706 1.21644 0.93269 0.96020 0.89768 1.23265 1.03613 0.93753 0.98530 1.22744 0.84479 0.98378 0.90704 0.87872 1.92837 1.57569 1.94458 1.73503 1.22481 0.96991 0.82632 1.00692 1.23124 0.98696 0.95584 1.06739 1.22529 0.92433 1.01098 1.02223 0.92547 0.85478 0.88628 0.91247 0.90600 0.89061 0.88935 0.89762 0.89740 0.91270 0.89670 0.89617 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.33 12.96 55.43 0.72 -23.61 16 2 C 0.10 2.72 5.39 -17.82 -0.10 2.62 16 3 Si 0.89 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.54 -15.20 6.89 -34.44 -0.24 -15.44 16 8 H 0.07 1.96 7.82 -52.48 -0.41 1.55 16 9 C 0.05 1.24 1.64 -155.66 -0.26 0.99 16 10 C -0.56 -12.23 6.29 37.16 0.23 -12.00 16 11 S 2.64 57.46 4.83 -107.50 -0.52 56.94 16 12 O -0.97 -22.79 17.60 -57.54 -1.01 -23.80 16 13 O -0.94 -23.62 16.73 -57.54 -0.96 -24.58 16 14 N -1.03 -16.88 3.62 -111.43 -0.40 -17.29 16 15 C 0.12 1.64 6.90 -3.06 -0.02 1.62 16 16 C -0.15 -1.46 6.76 -24.89 -0.17 -1.63 16 17 C 0.07 0.76 4.86 -24.58 -0.12 0.65 16 18 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 19 F -0.20 -2.66 17.24 2.25 0.04 -2.62 16 20 C 0.10 1.26 6.70 -2.53 -0.02 1.25 16 21 C -0.20 -4.54 9.88 -26.73 -0.26 -4.81 16 22 C -0.14 -3.36 9.50 -26.73 -0.25 -3.61 16 23 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 24 H 0.13 2.85 8.14 -51.93 -0.42 2.43 16 25 H 0.10 1.80 7.95 -51.92 -0.41 1.39 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 33 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 310.37 15.07 4.68 4.68 Total: -1.00 -33.49 310.37 -8.71 -42.20 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.03 Total: 1.47 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: -1.20 Total: -30.37 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.31 Total: -40.89 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -1.98 Total: -48.39 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 57.46 SS G_CDS: -0.52 Total: 56.94 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.49 -8.71 -42.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336302655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.017 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds