Wall clock time and date at job start Thu Apr 9 2020 13:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48503 * 109.47075 * 269.99706 * 3 2 1 5 5 H 1.48499 * 109.47379 * 29.99653 * 3 2 1 6 6 H 1.48501 * 109.47219 * 150.00085 * 3 2 1 7 7 C 1.37871 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99950 * 173.00434 * 7 2 1 9 9 C 1.50700 * 120.00512 * 353.00023 * 7 2 1 10 10 C 1.53001 * 115.54587 * 84.78326 * 9 7 2 11 11 S 1.81398 * 109.47019 * 39.92284 * 10 9 7 12 12 O 1.42108 * 110.54400 * 62.30722 * 11 10 9 13 13 O 1.42103 * 110.54478 * 285.55325 * 11 10 9 14 14 N 1.65608 * 104.44911 * 173.92976 * 11 10 9 15 15 C 1.47020 * 125.64578 * 89.99897 * 14 11 10 16 16 C 1.54325 * 107.26979 * 180.79175 * 15 14 11 17 17 C 1.55159 * 102.94114 * 22.19427 * 16 15 14 18 18 H 1.09002 * 111.00581 * 206.42216 * 17 16 15 19 19 F 1.39904 * 111.00310 * 82.56931 * 17 16 15 20 20 C 1.47420 * 125.64566 * 269.69120 * 14 11 10 21 21 C 1.52993 * 117.52166 * 230.49408 * 9 7 2 22 22 C 1.53001 * 60.00351 * 107.47758 * 21 9 7 23 23 H 0.96999 * 120.00323 * 5.03405 * 1 2 3 24 24 H 1.08994 * 109.47514 * 279.91507 * 10 9 7 25 25 H 1.09003 * 109.46780 * 159.92169 * 10 9 7 26 26 H 1.08995 * 109.88360 * 300.21229 * 15 14 11 27 27 H 1.08999 * 109.88335 * 61.37738 * 15 14 11 28 28 H 1.08998 * 110.71887 * 140.55334 * 16 15 14 29 29 H 1.08995 * 110.72298 * 263.83371 * 16 15 14 30 30 H 1.09002 * 110.36559 * 274.97365 * 20 14 11 31 31 H 1.08996 * 110.37415 * 37.29917 * 20 14 11 32 32 H 1.09007 * 117.49668 * 214.96942 * 21 9 7 33 33 H 1.08997 * 117.50099 * 359.97438 * 21 9 7 34 34 H 1.08992 * 117.49821 * 252.50978 * 22 21 9 35 35 H 1.08995 * 117.51466 * 107.48099 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0785 -1.1976 -0.1134 9 6 1.2595 -2.4942 0.1602 10 6 0.6799 -3.0849 -1.1268 11 16 1.8646 -2.8607 -2.4820 12 8 3.0720 -3.5590 -2.2097 13 8 1.8826 -1.5057 -2.9097 14 7 1.1962 -3.6820 -3.7553 15 6 0.2760 -3.1153 -4.7521 16 6 -0.0971 -4.2504 -5.7287 17 6 0.1871 -5.5303 -4.8989 18 1 0.4196 -6.3738 -5.5489 19 9 -0.8885 -5.8306 -4.0562 20 6 1.4304 -5.1006 -4.0806 21 6 1.7652 -3.4731 1.2216 22 6 0.4654 -2.6995 1.4518 23 1 -0.4850 0.8368 -0.0737 24 1 -0.2529 -2.5771 -1.3718 25 1 0.4880 -4.1484 -0.9841 26 1 -0.6209 -2.7413 -4.2583 27 1 0.7678 -2.3072 -5.2935 28 1 -1.1509 -4.1938 -6.0014 29 1 0.5343 -4.2185 -6.6166 30 1 2.3346 -5.2082 -4.6798 31 1 1.5066 -5.6916 -3.1679 32 1 1.6852 -4.5380 1.0031 33 1 2.6373 -3.1770 1.8046 34 1 0.4823 -1.8944 2.1863 35 1 -0.4699 -3.2551 1.3847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336302655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:39 Heat of formation + Delta-G solvation = -118.469224 kcal Electronic energy + Delta-G solvation = -20793.590635 eV Core-core repulsion = 17446.985634 eV Total energy + Delta-G solvation = -3346.605001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.53382 -38.82638 -38.55253 -37.92703 -36.73377 -34.13350 -31.55912 -29.91134 -29.87194 -27.54052 -23.68386 -22.99977 -22.18995 -21.38866 -19.94588 -18.76036 -18.31733 -17.80786 -17.01175 -16.66787 -16.54140 -16.10803 -15.81476 -15.61976 -15.21268 -14.91625 -14.49105 -13.96316 -13.81960 -13.78087 -13.60622 -13.08915 -12.97450 -12.89642 -12.84575 -12.48777 -12.43355 -12.37009 -12.12975 -11.95346 -11.82818 -11.69595 -11.59903 -10.90090 -10.55825 -10.15348 -9.79712 -8.25399 -6.43927 -0.54238 1.33941 1.39595 1.44911 2.00185 2.37336 3.02431 3.05871 3.13625 3.30229 3.35675 3.62180 3.81762 3.98996 4.01208 4.24683 4.28068 4.49017 4.51672 4.55475 4.57239 4.74080 4.81029 4.91838 4.92995 4.94555 5.06132 5.14736 5.26842 5.35370 5.48637 5.57145 5.65448 6.17175 6.65608 7.33997 8.81719 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.006927 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.835490 B = 4041.195608 C = 4438.739991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.057 3.943 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.559 4.559 8 H 0.050 0.950 9 C 0.012 3.988 10 C -0.553 4.553 11 S 2.649 3.351 12 O -0.994 6.994 13 O -0.981 6.981 14 N -1.026 6.026 15 C 0.102 3.898 16 C -0.139 4.139 17 C 0.078 3.922 18 H 0.152 0.848 19 F -0.221 7.221 20 C 0.081 3.919 21 C -0.188 4.188 22 C -0.142 4.142 23 H 0.267 0.733 24 H 0.117 0.883 25 H 0.126 0.874 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 -11.742 -11.425 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.148 4.148 3 Si 0.753 3.247 4 H -0.204 1.204 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.068 0.932 9 C 0.010 3.990 10 C -0.686 4.686 11 S 2.749 3.251 12 O -0.984 6.984 13 O -0.972 6.972 14 N -0.865 5.865 15 C -0.023 4.023 16 C -0.178 4.178 17 C 0.041 3.959 18 H 0.169 0.831 19 F -0.202 7.202 20 C -0.044 4.044 21 C -0.225 4.225 22 C -0.181 4.181 23 H 0.076 0.924 24 H 0.135 0.865 25 H 0.145 0.855 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.126 0.874 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.877 -11.103 -11.322 15.969 hybrid contribution -0.323 1.064 0.672 1.299 sum -2.200 -10.039 -10.650 14.800 Atomic orbital electron populations 1.69998 1.06781 1.28031 1.47139 1.25484 0.95532 1.01650 0.92136 0.85996 0.79746 0.80410 0.78510 1.20434 1.19244 1.18854 1.20743 0.93047 0.90744 1.55108 0.93224 1.18346 1.00341 0.94194 0.86075 1.29881 1.15764 1.07908 1.15044 1.03627 0.75135 0.72348 0.74031 1.93426 1.43805 1.75351 1.85862 1.93463 1.87019 1.36051 1.80642 1.58855 1.63262 1.21833 1.42543 1.21961 0.92288 0.97970 0.90058 1.23309 1.05282 0.91161 0.98068 1.23021 0.82463 1.00223 0.90217 0.83118 1.92809 1.58424 1.94632 1.74321 1.22936 0.99590 0.80186 1.01712 1.23204 0.97915 0.96757 1.04625 1.22471 0.93794 1.01046 1.00811 0.92377 0.86507 0.85531 0.92246 0.91106 0.87385 0.85928 0.87673 0.89874 0.88204 0.89869 0.91528 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.40 12.96 21.45 0.28 -50.12 16 2 C 0.06 3.24 5.39 84.65 0.46 3.69 16 3 Si 0.93 45.52 29.55 68.60 2.03 47.55 16 4 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.56 -31.84 6.89 25.60 0.18 -31.67 16 8 H 0.05 2.93 7.82 -2.91 -0.02 2.91 16 9 C 0.01 0.62 1.64 -52.93 -0.09 0.54 16 10 C -0.55 -24.15 6.29 71.98 0.45 -23.70 16 11 S 2.65 116.21 4.83 -56.49 -0.27 115.94 16 12 O -0.99 -46.79 17.60 -127.65 -2.25 -49.03 16 13 O -0.98 -51.06 16.73 -127.65 -2.14 -53.19 16 14 N -1.03 -32.68 3.62 -506.44 -1.83 -34.52 16 15 C 0.10 2.70 6.90 86.73 0.60 3.30 16 16 C -0.14 -2.17 6.76 31.78 0.21 -1.95 16 17 C 0.08 1.29 4.86 31.99 0.16 1.45 16 18 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 19 F -0.22 -5.13 17.24 44.97 0.78 -4.36 16 20 C 0.08 1.86 6.70 86.86 0.58 2.44 16 21 C -0.19 -8.13 9.88 30.59 0.30 -7.83 16 22 C -0.14 -6.57 9.50 30.60 0.29 -6.28 16 23 H 0.27 14.44 8.32 -92.71 -0.77 13.67 16 24 H 0.12 5.30 8.14 -2.39 -0.02 5.28 16 25 H 0.13 4.56 7.95 -2.39 -0.02 4.54 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 3.67 8.08 -2.38 -0.02 3.65 16 33 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -73.76 310.37 0.81 -72.96 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.07 Total: 14.78 kcal Atomic # 6 Polarization: -63.15 SS G_CDS: 3.14 Total: -60.01 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -1.56 Total: -84.64 kcal Atomic # 8 Polarization: -97.84 SS G_CDS: -4.38 Total: -102.23 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.78 Total: -4.36 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 116.21 SS G_CDS: -0.27 Total: 115.94 kcal Total: -73.76 0.81 -72.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336302655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.513 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds