Wall clock time and date at job start Thu Apr 9 2020 13:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48497 * 109.47211 * 239.99685 * 3 2 1 5 5 H 1.48505 * 109.47274 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47370 * 119.99969 * 3 2 1 7 7 C 1.40121 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.46175 * 120.00037 * 0.02562 * 7 2 1 10 10 O 1.21736 * 120.00139 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99893 * 179.97438 * 9 7 2 12 12 C 1.39573 * 120.00132 * 184.61092 * 11 9 7 13 13 C 1.39134 * 120.01394 * 144.86757 * 12 11 9 14 14 C 1.38167 * 120.21981 * 180.02562 * 13 12 11 15 15 C 1.38066 * 120.23891 * 359.95581 * 14 13 12 16 16 C 1.39645 * 120.01733 * 0.03628 * 15 14 13 17 17 C 1.47789 * 120.10977 * 180.02562 * 16 15 14 18 18 O 1.21515 * 120.00256 * 179.97438 * 17 16 15 19 19 N 1.34778 * 119.99521 * 359.97438 * 17 16 15 20 20 C 1.34779 * 119.99375 * 179.97438 * 19 17 16 21 21 N 1.34783 * 119.99741 * 179.97438 * 20 19 17 22 22 O 1.21542 * 120.00762 * 0.02562 * 20 19 17 23 23 C 1.38750 * 120.00542 * 324.87950 * 12 11 9 24 24 H 0.96999 * 120.00490 * 0.02562 * 1 2 3 25 25 H 0.97005 * 120.00440 * 4.60688 * 11 9 7 26 26 H 1.08003 * 119.89320 * 0.02562 * 13 12 11 27 27 H 1.07998 * 119.88173 * 179.97438 * 14 13 12 28 28 H 1.07998 * 119.99065 * 180.02562 * 15 14 13 29 29 H 0.96991 * 120.00323 * 0.02562 * 19 17 16 30 30 H 0.97004 * 119.99732 * 0.02562 * 21 20 19 31 31 H 0.96996 * 119.99875 * 180.02562 * 21 20 19 32 32 H 1.08000 * 120.11797 * 359.70888 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6964 -1.2124 5 1 1.2753 2.7465 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0010 9 6 1.2761 -2.4794 0.0005 10 8 0.0588 -2.4795 0.0005 11 7 1.9501 -3.6466 0.0005 12 6 1.2557 -4.8534 -0.0966 13 6 1.8096 -5.9207 -0.7965 14 6 1.1257 -7.1171 -0.8959 15 6 -0.1116 -7.2622 -0.3006 16 6 -0.6768 -6.1975 0.4044 17 6 -2.0009 -6.3508 1.0429 18 8 -2.4907 -5.4232 1.6563 19 7 -2.6650 -7.5195 0.9447 20 6 -3.8723 -7.6594 1.5274 21 7 -4.5367 -8.8279 1.4288 22 8 -4.3622 -6.7316 2.1409 23 6 0.0125 -4.9890 0.5046 24 1 -0.4851 0.8400 -0.0004 25 1 2.9178 -3.6480 0.0680 26 1 2.7774 -5.8137 -1.2638 27 1 1.5606 -7.9419 -1.4408 28 1 -0.6425 -8.1993 -0.3804 29 1 -2.2739 -8.2600 0.4554 30 1 -4.1459 -9.5682 0.9388 31 1 -5.4057 -8.9284 1.8478 32 1 -0.4175 -4.1635 1.0522 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338742977.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:47 Heat of formation + Delta-G solvation = -70.021565 kcal Electronic energy + Delta-G solvation = -20473.551102 eV Core-core repulsion = 17013.522960 eV Total energy + Delta-G solvation = -3460.028143 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08492 -39.34979 -37.96391 -36.79593 -34.66414 -33.62002 -33.27709 -32.47620 -30.73226 -29.19007 -26.26903 -24.83103 -22.45071 -21.89288 -20.50311 -19.88410 -18.95515 -17.80679 -17.39792 -16.42433 -15.87211 -15.86143 -15.56394 -15.43409 -14.69865 -14.38118 -14.07344 -13.81436 -13.74888 -13.36932 -12.76913 -12.46406 -11.93836 -11.63098 -11.33950 -11.10549 -11.07576 -10.82875 -10.63582 -10.37211 -10.03689 -9.92131 -9.59393 -9.43937 -8.91415 -8.64838 -7.76346 -7.28810 -6.33823 -4.83142 1.10811 1.81923 2.49768 2.55559 3.09736 3.14909 3.17320 3.42233 3.97864 4.09295 4.18070 4.46147 4.51297 4.75539 5.06598 5.29787 5.54216 5.60200 5.84849 5.93250 6.00186 6.24024 6.41593 6.58892 6.61264 6.74791 6.91546 7.15970 7.29005 7.40852 7.66526 7.95888 8.10882 8.20173 8.37646 8.84328 9.15764 10.36186 10.56252 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023979 B = 0.004307 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.400368 B = 6498.905619 C = 7572.675843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.085 3.915 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.538 3.462 10 O -0.554 6.554 11 N -0.699 5.699 12 C 0.186 3.814 13 C -0.147 4.147 14 C -0.106 4.106 15 C -0.135 4.135 16 C -0.125 4.125 17 C 0.562 3.438 18 O -0.452 6.452 19 N -0.689 5.689 20 C 0.696 3.304 21 N -0.861 5.861 22 O -0.532 6.532 23 C -0.063 4.063 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.407 0.593 30 H 0.398 0.602 31 H 0.418 0.582 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 -19.017 -1.993 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.345 3.655 10 O -0.435 6.435 11 N -0.342 5.342 12 C 0.086 3.914 13 C -0.169 4.169 14 C -0.125 4.125 15 C -0.155 4.155 16 C -0.129 4.129 17 C 0.350 3.650 18 O -0.319 6.319 19 N -0.357 5.357 20 C 0.394 3.606 21 N -0.432 5.432 22 O -0.403 6.403 23 C -0.085 4.085 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.133 0.867 29 H 0.243 0.757 30 H 0.226 0.774 31 H 0.250 0.750 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.817 -17.238 -1.109 17.293 hybrid contribution 1.001 -0.234 -0.515 1.150 sum 0.184 -17.472 -1.624 17.548 Atomic orbital electron populations 1.69972 1.07154 1.28097 1.33030 1.25756 0.94712 1.00557 0.92611 0.86320 0.79762 0.80537 0.79546 1.19158 1.20363 1.19098 1.20786 0.93753 0.88856 1.53970 0.90948 1.18472 0.87590 0.82076 0.77318 1.90672 1.13570 1.85685 1.53589 1.44222 1.09775 1.03994 1.76212 1.17911 0.92959 0.87094 0.93408 1.21158 1.01644 0.93919 1.00214 1.20669 0.94653 0.97132 1.00050 1.20904 0.96700 0.97265 1.00672 1.19507 0.94038 0.96026 1.03307 1.18536 0.85181 0.81049 0.80232 1.90949 1.66761 1.37635 1.36559 1.44063 1.19469 1.17611 1.54544 1.16157 0.80705 0.83733 0.80027 1.43070 1.24643 1.13965 1.61491 1.91135 1.67065 1.38815 1.43325 1.21710 0.93943 0.96198 0.96641 0.91508 0.77074 0.85834 0.85862 0.86720 0.75686 0.77444 0.74952 0.82311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.36 11.82 55.55 0.66 -21.70 16 2 C 0.09 2.32 5.50 -17.35 -0.10 2.23 16 3 Si 0.91 19.63 29.56 -169.99 -5.02 14.61 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.54 -14.62 9.54 -35.69 -0.34 -14.96 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.54 14.87 7.58 -13.07 -0.10 14.77 16 10 O -0.55 -17.52 12.45 5.16 0.06 -17.46 16 11 N -0.70 -15.18 5.32 -11.23 -0.06 -15.24 16 12 C 0.19 3.70 6.29 -83.81 -0.53 3.17 16 13 C -0.15 -2.23 9.96 -39.27 -0.39 -2.63 16 14 C -0.11 -1.33 10.02 -39.67 -0.40 -1.72 16 15 C -0.14 -1.72 9.54 -39.12 -0.37 -2.10 16 16 C -0.12 -2.19 5.87 -105.00 -0.62 -2.80 16 17 C 0.56 10.37 7.71 -12.35 -0.10 10.28 16 18 O -0.45 -10.98 14.74 -18.45 -0.27 -11.25 16 19 N -0.69 -8.83 5.19 -16.65 -0.09 -8.92 16 20 C 0.70 9.73 8.78 -86.91 -0.76 8.97 16 21 N -0.86 -6.31 8.88 27.63 0.25 -6.07 16 22 O -0.53 -10.86 15.58 -18.48 -0.29 -11.14 16 23 C -0.06 -1.38 8.23 -38.93 -0.32 -1.70 16 24 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 25 H 0.40 7.15 8.80 -40.82 -0.36 6.79 16 26 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 27 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 28 H 0.11 0.92 6.40 -52.49 -0.34 0.58 16 29 H 0.41 3.09 6.74 -40.82 -0.27 2.81 16 30 H 0.40 1.29 8.84 -40.82 -0.36 0.93 16 31 H 0.42 2.60 8.93 -40.82 -0.36 2.23 16 32 H 0.16 4.23 5.82 -52.49 -0.31 3.92 16 LS Contribution 291.65 15.07 4.40 4.40 Total: -1.00 -40.78 291.65 -6.78 -47.56 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -2.39 Total: 11.70 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: -4.02 Total: 13.51 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.76 Total: -51.92 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.50 Total: -39.85 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -40.78 -6.78 -47.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338742977.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.463 kcal (2) G-P(sol) polarization free energy of solvation -40.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds