Wall clock time and date at job start Thu Apr 9 2020 13:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48498 * 109.47114 * 239.99428 * 3 2 1 5 5 H 1.48502 * 109.47145 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47221 * 119.99120 * 3 2 1 7 7 C 1.38942 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00373 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00297 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00374 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00208 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.47314 * 179.97438 * 12 10 9 14 14 C 1.50707 * 109.46936 * 179.97438 * 13 12 10 15 15 N 1.30969 * 126.42478 * 90.30467 * 14 13 12 16 16 C 1.35252 * 105.57434 * 180.13755 * 15 14 13 17 17 C 1.48318 * 126.42080 * 179.84437 * 16 15 14 18 18 C 1.46750 * 127.12488 * 179.84126 * 17 16 15 19 19 C 1.34340 * 106.00663 * 180.27536 * 18 17 16 20 20 O 1.34173 * 109.00155 * 359.77487 * 19 18 17 21 21 C 1.33976 * 110.77636 * 0.02562 * 20 19 18 22 22 N 1.30828 * 107.15726 * 359.58295 * 16 15 14 23 23 O 1.21288 * 110.08561 * 0.26326 * 22 16 15 24 24 H 0.97004 * 119.99828 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99921 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47374 * 59.99674 * 12 10 9 27 27 H 1.08995 * 109.47252 * 299.99902 * 12 10 9 28 28 H 1.09001 * 109.46817 * 60.00348 * 13 12 10 29 29 H 1.08999 * 109.47366 * 299.99898 * 13 12 10 30 30 H 1.07999 * 126.99627 * 0.04892 * 18 17 16 31 31 H 1.07999 * 125.49929 * 179.75324 * 19 18 17 32 32 H 1.08002 * 125.76475 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8629 0.0010 13 6 2.2379 -6.0259 0.0018 14 6 1.4843 -7.3310 0.0018 15 7 1.1007 -8.0075 -1.0520 16 6 0.4635 -9.0991 -0.5705 17 6 -0.1602 -10.1797 -1.3724 18 6 -0.8519 -11.3713 -0.8670 19 6 -1.2415 -12.0615 -1.9516 20 8 -0.8561 -11.3988 -3.0528 21 6 -0.2109 -10.2707 -2.7272 22 7 0.5055 -9.0260 0.7350 23 8 1.0872 -8.0183 1.0773 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6180 -4.9209 -0.8896 27 1 0.6160 -4.9205 0.8902 28 1 2.8638 -5.9681 0.8923 29 1 2.8652 -5.9682 -0.8877 30 1 -1.0115 -11.6405 0.1667 31 1 -1.7781 -12.9987 -1.9393 32 1 0.2026 -9.5564 -3.4238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339925742.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:50:49 Heat of formation + Delta-G solvation = 38.653805 kcal Electronic energy + Delta-G solvation = -19664.908279 eV Core-core repulsion = 16209.592654 eV Total energy + Delta-G solvation = -3455.315625 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.51107 -42.73094 -38.39558 -36.10514 -34.69644 -33.91913 -32.75183 -31.35831 -30.71549 -30.00462 -26.19075 -24.90533 -24.16970 -22.64663 -21.39519 -20.66836 -19.26480 -18.35205 -18.11886 -17.78893 -17.00823 -16.30192 -16.11437 -15.41565 -14.98398 -14.69651 -14.14920 -14.01204 -13.72133 -13.20403 -12.92452 -12.76592 -12.62975 -12.24727 -12.21601 -11.88983 -11.56484 -11.15204 -11.08454 -10.83580 -10.51770 -10.47491 -10.25855 -9.64976 -9.57185 -8.88311 -8.52534 -8.04672 -6.47502 -3.89046 0.85562 1.42279 1.77341 2.65104 2.81996 2.83405 3.16689 3.23646 3.27682 3.43030 3.80892 3.84474 4.13342 4.41448 4.72928 4.85809 4.96693 5.11828 5.15222 5.26293 5.36412 5.51001 5.60171 5.71160 5.81239 5.85635 5.98942 6.16153 6.20397 6.28881 6.70570 7.49810 7.97872 8.13589 8.51487 9.10044 9.45881 9.95324 10.69717 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.039262 B = 0.002787 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.983715 B =10045.500357 C =10314.972242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.104 0.896 9 N -0.556 5.556 10 C 0.441 3.559 11 O -0.597 6.597 12 C -0.128 4.128 13 C -0.009 4.009 14 C 0.204 3.796 15 N -0.483 5.483 16 C 0.240 3.760 17 C -0.127 4.127 18 C -0.185 4.185 19 C -0.036 4.036 20 O -0.176 6.176 21 C 0.032 3.968 22 N -0.381 5.381 23 O 0.079 5.921 24 H 0.273 0.727 25 H 0.394 0.606 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.157 0.843 31 H 0.210 0.790 32 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 -19.651 -2.781 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.122 0.878 9 N -0.191 5.191 10 C 0.227 3.773 11 O -0.483 6.483 12 C -0.170 4.170 13 C -0.049 4.049 14 C -0.016 4.016 15 N -0.216 5.216 16 C -0.030 4.030 17 C -0.130 4.130 18 C -0.205 4.205 19 C -0.102 4.102 20 O -0.070 6.070 21 C -0.039 4.039 22 N -0.089 5.089 23 O 0.020 5.980 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.175 0.825 31 H 0.226 0.774 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.432 -20.261 -2.952 20.760 hybrid contribution -0.230 1.034 0.358 1.118 sum -3.662 -19.227 -2.594 19.744 Atomic orbital electron populations 1.69605 1.06000 1.28472 1.49867 1.25297 0.95640 0.99867 0.97003 0.85899 0.78780 0.80297 0.79148 1.19810 1.20944 1.19799 1.19688 0.93427 0.82169 1.48033 0.87773 1.41866 1.09354 1.04628 1.63250 1.19579 0.88106 0.84645 0.84995 1.90536 1.13745 1.87278 1.56782 1.21469 0.98405 0.93066 1.04037 1.20057 0.95800 0.81474 1.07522 1.29086 0.95012 0.97487 0.80011 1.72027 1.15949 1.04878 1.28784 1.22859 0.98751 0.94096 0.87316 1.18597 1.07232 0.95200 0.91990 1.22771 1.02801 0.94396 1.00494 1.23934 1.03940 0.99461 0.82863 1.83921 1.57742 1.30110 1.35271 1.24265 0.96353 0.88060 0.95265 1.74901 1.15668 1.03608 1.14764 1.85299 1.52041 1.24798 1.35869 0.91669 0.77248 0.89523 0.89645 0.87119 0.86339 0.82526 0.77386 0.76564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.98 13.05 55.50 0.72 -23.26 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 9 N -0.56 -13.56 5.29 -10.96 -0.06 -13.62 16 10 C 0.44 9.70 7.78 -10.99 -0.09 9.62 16 11 O -0.60 -15.00 15.56 5.54 0.09 -14.92 16 12 C -0.13 -2.05 5.68 -27.88 -0.16 -2.21 16 13 C -0.01 -0.13 5.13 -27.88 -0.14 -0.27 16 14 C 0.20 2.91 7.75 -12.98 -0.10 2.81 16 15 N -0.48 -7.21 11.58 -9.86 -0.11 -7.32 16 16 C 0.24 3.52 8.08 -156.08 -1.26 2.26 16 17 C -0.13 -1.57 6.33 -103.16 -0.65 -2.22 16 18 C -0.18 -1.84 11.15 -37.52 -0.42 -2.26 16 19 C -0.04 -0.27 12.04 29.36 0.35 0.08 16 20 O -0.18 -1.62 10.54 6.93 0.07 -1.55 16 21 C 0.03 0.32 12.07 29.89 0.36 0.68 16 22 N -0.38 -5.83 12.21 30.98 0.38 -5.45 16 23 O 0.08 1.16 11.29 18.05 0.20 1.36 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 26 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.11 1.49 8.10 -51.93 -0.42 1.07 16 29 H 0.12 1.70 8.10 -51.93 -0.42 1.28 16 30 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.21 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.22 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 301.60 15.07 4.55 4.55 Total: -1.00 -31.93 301.60 -4.32 -36.25 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -2.79 Total: 7.76 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -2.35 Total: 0.67 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.93 Total: -49.65 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.36 Total: -15.10 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.93 -4.32 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339925742.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.903 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds