Wall clock time and date at job start Thu Apr 9 2020 13:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99858 * 2 1 4 4 N 1.46500 * 109.46652 * 125.00126 * 3 2 1 5 5 C 1.34777 * 119.99974 * 269.99941 * 4 3 2 6 6 O 1.21292 * 119.99791 * 184.75935 * 5 4 3 7 7 C 1.50695 * 120.00262 * 4.75791 * 5 4 3 8 8 S 1.80996 * 109.47478 * 179.97438 * 7 5 4 9 9 C 1.76200 * 100.00212 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00052 * 0.02562 * 9 8 7 11 11 C 1.38800 * 119.99812 * 179.97438 * 9 8 7 12 12 N 1.31629 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47040 * 60.00278 * 13 11 9 15 15 H 1.48495 * 109.46926 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47209 * 300.00259 * 13 11 9 17 17 C 1.39927 * 119.99779 * 90.00148 * 4 3 2 18 18 C 1.38873 * 120.06798 * 247.82199 * 17 4 3 19 19 C 1.38112 * 119.92963 * 179.97438 * 18 17 4 20 20 C 1.38293 * 120.06824 * 359.97438 * 19 18 17 21 21 C 1.38281 * 120.14091 * 0.04696 * 20 19 18 22 22 C 1.38116 * 120.07204 * 359.95466 * 21 20 19 23 23 H 1.07994 * 120.00213 * 179.97438 * 1 2 3 24 24 H 1.08005 * 119.99933 * 359.97438 * 1 2 3 25 25 H 1.07992 * 120.00112 * 180.02562 * 2 1 3 26 26 H 1.08993 * 109.47088 * 5.00516 * 3 2 1 27 27 H 1.08992 * 109.46939 * 245.00005 * 3 2 1 28 28 H 1.08999 * 109.47279 * 300.00614 * 7 5 4 29 29 H 1.09000 * 109.46739 * 59.99911 * 7 5 4 30 30 H 0.96996 * 119.99717 * 179.97438 * 12 11 9 31 31 H 1.08004 * 120.03735 * 359.70647 * 18 17 4 32 32 H 1.07994 * 119.96991 * 179.97438 * 19 18 17 33 33 H 1.08001 * 119.92393 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.96567 * 179.97438 * 21 20 19 35 35 H 1.07993 * 120.03274 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5936 1.8222 2.3214 6 8 3.3872 1.9244 3.2329 7 6 1.1603 2.2434 2.5194 8 16 0.9384 2.8528 4.2091 9 6 -0.7743 3.2644 4.1635 10 1 -1.3431 3.1089 3.2588 11 6 -1.3925 3.7874 5.2908 12 7 -0.6993 3.9765 6.3937 13 14 -3.2084 4.2231 5.2427 14 1 -4.0012 3.0068 4.9305 15 1 -3.6238 4.7598 6.5635 16 1 -3.4436 5.2495 4.1956 17 6 4.2976 0.8483 0.9766 18 6 4.6942 -0.3072 1.6370 19 6 5.9818 -0.7822 1.4818 20 6 6.8755 -0.1087 0.6693 21 6 6.4838 1.0424 0.0107 22 6 5.1977 1.5226 0.1619 23 1 -0.5400 -0.9352 -0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8500 -0.9352 -0.0004 26 1 1.3586 2.1316 0.0897 27 1 2.6212 1.4026 -0.9313 28 1 0.9131 3.0348 1.8118 29 1 0.5043 1.3891 2.3525 30 1 -1.1314 4.3424 7.1813 31 1 3.9979 -0.8315 2.2748 32 1 6.2910 -1.6805 1.9953 33 1 7.8819 -0.4820 0.5499 34 1 7.1842 1.5663 -0.6227 35 1 4.8925 2.4219 -0.3524 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358432944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:05 Heat of formation + Delta-G solvation = 19.023935 kcal Electronic energy + Delta-G solvation = -18476.344437 eV Core-core repulsion = 15566.470812 eV Total energy + Delta-G solvation = -2909.873625 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37908 -38.26670 -36.09506 -33.27882 -32.43536 -30.97332 -30.51963 -28.49960 -26.17010 -25.49120 -22.77218 -22.49311 -20.22903 -19.46207 -17.74515 -17.35146 -16.53268 -16.06032 -15.74897 -14.82859 -14.80860 -14.50139 -14.26804 -13.90892 -13.49465 -13.44709 -13.21337 -12.73214 -12.57657 -12.27578 -11.93501 -11.55465 -11.45459 -11.17368 -11.05537 -11.04460 -10.78341 -9.85517 -9.68390 -9.43253 -9.24080 -9.06200 -8.97207 -8.34382 -8.24172 -6.51394 -6.22026 -3.93091 1.23900 1.36474 2.08513 2.95131 2.97763 3.22842 3.25527 3.28718 3.58469 3.73267 4.19492 4.75628 4.86473 4.89997 4.94220 5.01647 5.06387 5.13055 5.19643 5.37351 5.48014 5.55820 5.58883 5.60891 5.82677 5.87604 5.97878 6.11185 6.29024 6.45517 6.47037 6.51280 6.59441 6.62553 7.09600 7.41875 7.58471 8.34234 8.50185 9.22976 10.85377 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.004354 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.374371 B = 6428.817449 C = 7083.745298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.180 4.180 3 C 0.140 3.860 4 N -0.579 5.579 5 C 0.536 3.464 6 O -0.500 6.500 7 C -0.149 4.149 8 S -0.061 6.061 9 C -0.535 4.535 10 H 0.072 0.928 11 C 0.075 3.925 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.154 3.846 18 C -0.108 4.108 19 C -0.110 4.110 20 C -0.127 4.127 21 C -0.112 4.112 22 C -0.124 4.124 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.269 0.731 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.707 -8.465 -16.266 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.199 4.199 3 C 0.018 3.982 4 N -0.311 5.311 5 C 0.325 3.675 6 O -0.372 6.372 7 C -0.299 4.299 8 S 0.166 5.834 9 C -0.683 4.683 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.744 3.256 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.064 3.936 18 C -0.128 4.128 19 C -0.128 4.128 20 C -0.145 4.145 21 C -0.131 4.131 22 C -0.143 4.143 23 H 0.119 0.881 24 H 0.120 0.880 25 H 0.128 0.872 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.857 -8.208 -14.683 19.496 hybrid contribution -2.162 0.095 -1.072 2.415 sum 7.695 -8.113 -15.754 19.319 Atomic orbital electron populations 1.23955 0.95733 1.02459 0.98509 1.23253 0.96262 0.98769 1.01631 1.20771 0.92155 0.96322 0.88972 1.45651 1.10035 1.63370 1.12049 1.20497 0.90195 0.75995 0.80791 1.90731 1.54686 1.51577 1.40205 1.23588 0.94193 1.04311 1.07804 1.85423 1.12829 1.81298 1.03834 1.22801 0.94710 1.49559 1.01258 0.90974 1.24982 0.99073 0.94910 0.94519 1.70007 1.36440 1.41864 1.01947 0.86234 0.82950 0.78842 0.77543 1.19915 1.20803 1.19924 1.17608 0.84891 0.93153 0.97969 1.21313 0.96948 0.95089 0.99434 1.21033 0.93095 1.00128 0.98593 1.21142 0.99539 0.96067 0.97745 1.20983 0.95529 0.96581 0.99971 1.21237 0.93286 0.99413 1.00397 0.88134 0.88016 0.87218 0.89118 0.89535 0.89272 0.88806 0.92114 0.85943 0.85810 0.86057 0.85851 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 13.80 29.02 0.40 -1.40 16 2 C -0.18 -2.00 9.64 -36.02 -0.35 -2.34 16 3 C 0.14 1.62 5.57 -5.19 -0.03 1.59 16 4 N -0.58 -8.82 2.51 -114.74 -0.29 -9.11 16 5 C 0.54 10.59 7.54 -10.99 -0.08 10.50 16 6 O -0.50 -11.87 15.62 5.55 0.09 -11.78 16 7 C -0.15 -3.05 4.82 36.00 0.17 -2.88 16 8 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 9 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 10 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 11 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 12 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 13 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C 0.15 2.24 4.75 -83.69 -0.40 1.84 16 18 C -0.11 -1.52 9.55 -39.39 -0.38 -1.90 16 19 C -0.11 -1.27 10.04 -39.61 -0.40 -1.67 16 20 C -0.13 -1.31 10.04 -39.55 -0.40 -1.71 16 21 C -0.11 -1.19 10.04 -39.61 -0.40 -1.59 16 22 C -0.12 -1.54 9.68 -39.39 -0.38 -1.92 16 23 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 24 H 0.10 1.07 7.84 -52.48 -0.41 0.66 16 25 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 26 H 0.09 1.03 6.12 -51.93 -0.32 0.71 16 27 H 0.09 0.81 7.86 -51.93 -0.41 0.40 16 28 H 0.09 1.68 7.26 -51.92 -0.38 1.30 16 29 H 0.09 1.81 7.40 -51.92 -0.38 1.43 16 30 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -34.06 322.26 -8.28 -42.35 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.40 Total: 1.01 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -2.03 Total: -14.31 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.45 Total: -34.52 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.06 -8.28 -42.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358432944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.371 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds