Wall clock time and date at job start Thu Apr 9 2020 13:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99858 * 2 1 4 4 N 1.46500 * 109.46652 * 125.00126 * 3 2 1 5 5 C 1.34777 * 119.99974 * 269.99941 * 4 3 2 6 6 O 1.21292 * 119.99791 * 184.75935 * 5 4 3 7 7 C 1.50695 * 120.00262 * 4.75791 * 5 4 3 8 8 S 1.80996 * 109.47478 * 179.97438 * 7 5 4 9 9 C 1.76200 * 100.00212 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00052 * 0.02562 * 9 8 7 11 11 C 1.38800 * 119.99812 * 179.97438 * 9 8 7 12 12 N 1.31629 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47040 * 60.00278 * 13 11 9 15 15 H 1.48495 * 109.46926 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47209 * 300.00259 * 13 11 9 17 17 C 1.39927 * 119.99779 * 90.00148 * 4 3 2 18 18 C 1.38873 * 120.06798 * 247.82199 * 17 4 3 19 19 C 1.38112 * 119.92963 * 179.97438 * 18 17 4 20 20 C 1.38293 * 120.06824 * 359.97438 * 19 18 17 21 21 C 1.38281 * 120.14091 * 0.04696 * 20 19 18 22 22 C 1.38116 * 120.07204 * 359.95466 * 21 20 19 23 23 H 1.07994 * 120.00213 * 179.97438 * 1 2 3 24 24 H 1.08005 * 119.99933 * 359.97438 * 1 2 3 25 25 H 1.07992 * 120.00112 * 180.02562 * 2 1 3 26 26 H 1.08993 * 109.47088 * 5.00516 * 3 2 1 27 27 H 1.08992 * 109.46939 * 245.00005 * 3 2 1 28 28 H 1.08999 * 109.47279 * 300.00614 * 7 5 4 29 29 H 1.09000 * 109.46739 * 59.99911 * 7 5 4 30 30 H 0.96996 * 119.99717 * 179.97438 * 12 11 9 31 31 H 1.08004 * 120.03735 * 359.70647 * 18 17 4 32 32 H 1.07994 * 119.96991 * 179.97438 * 19 18 17 33 33 H 1.08001 * 119.92393 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.96567 * 179.97438 * 21 20 19 35 35 H 1.07993 * 120.03274 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5936 1.8222 2.3214 6 8 3.3872 1.9244 3.2329 7 6 1.1603 2.2434 2.5194 8 16 0.9384 2.8528 4.2091 9 6 -0.7743 3.2644 4.1635 10 1 -1.3431 3.1089 3.2588 11 6 -1.3925 3.7874 5.2908 12 7 -0.6993 3.9765 6.3937 13 14 -3.2084 4.2231 5.2427 14 1 -4.0012 3.0068 4.9305 15 1 -3.6238 4.7598 6.5635 16 1 -3.4436 5.2495 4.1956 17 6 4.2976 0.8483 0.9766 18 6 4.6942 -0.3072 1.6370 19 6 5.9818 -0.7822 1.4818 20 6 6.8755 -0.1087 0.6693 21 6 6.4838 1.0424 0.0107 22 6 5.1977 1.5226 0.1619 23 1 -0.5400 -0.9352 -0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8500 -0.9352 -0.0004 26 1 1.3586 2.1316 0.0897 27 1 2.6212 1.4026 -0.9313 28 1 0.9131 3.0348 1.8118 29 1 0.5043 1.3891 2.3525 30 1 -1.1314 4.3424 7.1813 31 1 3.9979 -0.8315 2.2748 32 1 6.2910 -1.6805 1.9953 33 1 7.8819 -0.4820 0.5499 34 1 7.1842 1.5663 -0.6227 35 1 4.8925 2.4219 -0.3524 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358432944.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:04 Heat of formation + Delta-G solvation = -0.741991 kcal Electronic energy + Delta-G solvation = -18477.201552 eV Core-core repulsion = 15566.470812 eV Total energy + Delta-G solvation = -2910.730740 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61707 -39.41894 -37.31047 -34.59035 -34.26694 -31.88611 -31.84399 -29.80800 -27.68132 -27.17788 -23.83926 -23.47788 -21.29057 -20.62419 -19.65599 -18.54758 -17.90471 -17.07856 -16.97854 -16.88077 -16.12484 -15.70172 -15.62886 -15.17226 -14.74609 -14.48132 -14.44392 -14.34910 -13.73429 -13.60288 -13.19161 -12.99737 -12.86320 -12.65247 -12.46896 -12.41480 -12.06054 -11.76778 -11.13153 -11.10991 -10.44524 -10.40257 -10.26389 -9.89373 -9.41585 -8.69297 -8.34626 -6.13846 0.27811 0.44325 1.08814 1.30414 1.44045 1.45820 1.48389 1.56525 2.10553 2.26639 2.80421 2.99688 3.24603 3.73065 3.84936 3.97291 4.04751 4.06675 4.20060 4.25503 4.32547 4.42008 4.52557 4.60140 4.66079 4.71057 5.00400 5.08198 5.39920 5.41206 5.48845 5.56655 5.62323 5.65864 5.69977 6.07848 6.14424 6.19606 7.05082 7.06443 8.74503 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.004354 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.374371 B = 6428.817449 C = 7083.745298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.188 4.188 3 C 0.133 3.867 4 N -0.563 5.563 5 C 0.536 3.464 6 O -0.552 6.552 7 C -0.120 4.120 8 S -0.150 6.150 9 C -0.545 4.545 10 H 0.084 0.916 11 C 0.015 3.985 12 N -0.912 5.912 13 Si 0.998 3.002 14 H -0.261 1.261 15 H -0.280 1.280 16 H -0.261 1.261 17 C 0.123 3.877 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.131 4.131 23 H 0.112 0.888 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.271 0.729 31 H 0.103 0.897 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 -8.770 -18.785 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C 0.012 3.988 4 N -0.293 5.293 5 C 0.325 3.675 6 O -0.428 6.428 7 C -0.270 4.270 8 S 0.077 5.923 9 C -0.693 4.693 10 H 0.102 0.898 11 C -0.190 4.190 12 N -0.548 5.548 13 Si 0.819 3.181 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.185 1.185 17 C 0.033 3.967 18 C -0.152 4.152 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.127 4.127 22 C -0.151 4.151 23 H 0.130 0.870 24 H 0.122 0.878 25 H 0.129 0.871 26 H 0.113 0.887 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.782 -8.538 -17.268 21.605 hybrid contribution -2.002 0.101 -0.415 2.047 sum 7.780 -8.437 -17.684 21.081 Atomic orbital electron populations 1.24125 0.95646 1.03196 0.97484 1.23216 0.96442 0.98520 1.02503 1.21072 0.92123 0.96841 0.88717 1.45513 1.11118 1.61439 1.11208 1.20330 0.89346 0.76136 0.81733 1.90703 1.55615 1.54217 1.42274 1.23374 0.95522 1.05050 1.03097 1.85620 1.14009 1.82294 1.10398 1.23144 0.94585 1.49562 1.01984 0.89769 1.26124 1.04557 0.94445 0.93853 1.70180 1.38825 1.42954 1.02858 0.85011 0.76054 0.79096 0.77891 1.18580 1.20465 1.18515 1.17873 0.84891 0.94150 0.99791 1.21350 0.98058 0.95778 1.00026 1.21328 0.92252 1.00918 0.98819 1.21576 1.00649 0.95450 0.96190 1.21409 0.95139 0.96501 0.99631 1.21445 0.93794 0.99728 1.00106 0.87000 0.87763 0.87145 0.88675 0.86847 0.87204 0.87447 0.91986 0.87859 0.83874 0.82710 0.82618 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 13.80 67.78 0.94 -2.34 16 2 C -0.19 -3.92 9.64 25.65 0.25 -3.68 16 3 C 0.13 2.89 5.57 85.63 0.48 3.36 16 4 N -0.56 -16.99 2.51 -635.31 -1.59 -18.58 16 5 C 0.54 21.56 7.54 87.66 0.66 22.22 16 6 O -0.55 -27.35 15.62 -3.07 -0.05 -27.39 16 7 C -0.12 -4.94 4.82 71.23 0.34 -4.60 16 8 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 9 C -0.55 -31.11 9.50 67.95 0.65 -30.47 16 10 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 11 C 0.02 0.85 5.49 84.86 0.47 1.32 16 12 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 13 Si 1.00 43.37 29.55 68.60 2.03 45.39 16 14 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 17 C 0.12 3.52 4.75 38.15 0.18 3.70 16 18 C -0.13 -3.76 9.55 22.39 0.21 -3.55 16 19 C -0.11 -2.51 10.04 22.25 0.22 -2.29 16 20 C -0.12 -2.14 10.04 22.29 0.22 -1.92 16 21 C -0.11 -1.97 10.04 22.25 0.22 -1.75 16 22 C -0.13 -3.04 9.68 22.39 0.22 -2.82 16 23 H 0.11 1.93 8.06 -2.91 -0.02 1.91 16 24 H 0.10 2.00 7.84 -2.91 -0.02 1.98 16 25 H 0.11 2.30 8.06 -2.91 -0.02 2.27 16 26 H 0.10 1.98 6.12 -2.39 -0.01 1.96 16 27 H 0.11 1.87 7.86 -2.39 -0.02 1.85 16 28 H 0.11 4.05 7.26 -2.40 -0.02 4.03 16 29 H 0.11 4.11 7.40 -2.40 -0.02 4.10 16 30 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.10 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -76.78 322.26 5.64 -71.14 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 1.07 Total: 17.84 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 5.06 Total: -22.80 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -1.31 Total: -74.53 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -76.78 5.64 -71.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358432944.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.396 kcal (2) G-P(sol) polarization free energy of solvation -76.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds