Wall clock time and date at job start Thu Apr 9 2020 13:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99694 * 2 1 4 4 H 1.48503 * 109.46815 * 239.99713 * 3 2 1 5 5 H 1.48497 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46781 * 120.00103 * 3 2 1 7 7 C 1.37870 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00283 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00054 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.46986 * 180.02562 * 9 7 2 11 11 C 1.81406 * 102.99744 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.42998 * 54.29896 * 11 10 9 13 13 C 1.54623 * 110.59626 * 176.91593 * 11 10 9 14 14 C 1.54487 * 101.76292 * 143.53284 * 13 11 10 15 15 N 1.46758 * 105.47264 * 334.58434 * 14 13 11 16 16 C 1.39927 * 124.35092 * 197.03870 * 15 14 13 17 17 C 1.38866 * 120.07105 * 173.91319 * 16 15 14 18 18 C 1.38116 * 119.92888 * 179.76480 * 17 16 15 19 19 C 1.38282 * 120.06798 * 0.48225 * 18 17 16 20 20 C 1.38285 * 120.14202 * 359.77356 * 19 18 17 21 21 C 1.38114 * 120.07171 * 359.97438 * 20 19 18 22 22 C 1.34419 * 111.30155 * 17.01348 * 15 14 13 23 23 O 1.21294 * 124.94368 * 179.55306 * 22 15 14 24 24 H 0.97005 * 120.00454 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46841 * 59.99682 * 9 7 2 26 26 H 1.08999 * 109.46889 * 300.00062 * 9 7 2 27 27 H 1.09004 * 110.97015 * 261.64666 * 13 11 10 28 28 H 1.09001 * 110.97707 * 25.41519 * 13 11 10 29 29 H 1.08993 * 110.24546 * 215.58046 * 14 13 11 30 30 H 1.09003 * 110.31788 * 93.62083 * 14 13 11 31 31 H 1.08000 * 120.03851 * 359.97311 * 17 16 15 32 32 H 1.08000 * 119.96858 * 180.21151 * 18 17 16 33 33 H 1.07998 * 119.93087 * 179.74352 * 19 18 17 34 34 H 1.08004 * 119.96361 * 179.97438 * 20 19 18 35 35 H 1.07997 * 120.03494 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 16 2.4300 -3.8778 0.0021 11 6 1.3517 -5.3367 0.0027 12 1 0.6466 -5.2890 -0.8272 13 6 2.1907 -6.6332 -0.0739 14 6 1.3798 -7.5870 0.8313 15 7 0.6502 -6.7178 1.7618 16 6 0.0674 -7.1534 2.9570 17 6 -0.4933 -6.2337 3.8334 18 6 -1.0721 -6.6673 5.0101 19 6 -1.0847 -8.0148 5.3205 20 6 -0.5224 -8.9327 4.4524 21 6 0.0533 -8.5059 3.2717 22 6 0.6140 -5.4493 1.3186 23 8 0.0686 -4.5289 1.8902 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.2352 -7.0093 -1.0960 28 1 3.1924 -6.4740 0.3256 29 1 2.0508 -8.2479 1.3798 30 1 0.6802 -8.1719 0.2341 31 1 -0.4799 -5.1807 3.5936 32 1 -1.5114 -5.9529 5.6905 33 1 -1.5341 -8.3510 6.2432 34 1 -0.5335 -9.9844 4.6979 35 1 0.4926 -9.2232 2.5943 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413009601.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:24 Heat of formation + Delta-G solvation = -24.186981 kcal Electronic energy + Delta-G solvation = -18593.778338 eV Core-core repulsion = 15682.030947 eV Total energy + Delta-G solvation = -2911.747391 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.11919 -39.53749 -37.78068 -35.30502 -34.17416 -31.88012 -30.69656 -30.00569 -28.83018 -25.34901 -24.21076 -24.03596 -22.15856 -20.96972 -18.87125 -18.59351 -18.10537 -17.44332 -17.22875 -16.65755 -16.06014 -15.67168 -15.18548 -14.94535 -14.85770 -14.83096 -14.53730 -14.33033 -14.10284 -13.82685 -13.68663 -13.20244 -12.74247 -12.65937 -12.47337 -12.40419 -12.09679 -11.92875 -11.50066 -11.19577 -11.10446 -10.77140 -10.67440 -9.91691 -8.94335 -8.59033 -8.34151 -6.49523 0.20121 0.43301 0.71693 1.35603 1.40866 1.47907 1.55177 1.67076 1.95161 2.34409 2.89056 2.99222 3.03139 3.40120 3.80622 3.92393 4.00052 4.07284 4.29504 4.34548 4.48371 4.52191 4.55090 4.69501 4.88992 4.89945 4.99313 5.07720 5.12810 5.22258 5.45051 5.52678 5.59024 5.62511 5.85901 5.97708 6.12764 6.58419 6.90728 7.18232 8.78011 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.004425 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.727415 B = 6325.905247 C = 7200.239343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.084 3.916 10 S -0.251 6.251 11 C -0.102 4.102 12 H 0.124 0.876 13 C -0.092 4.092 14 C 0.098 3.902 15 N -0.557 5.557 16 C 0.146 3.854 17 C -0.196 4.196 18 C -0.104 4.104 19 C -0.147 4.147 20 C -0.088 4.088 21 C -0.152 4.152 22 C 0.506 3.494 23 O -0.540 6.540 24 H 0.270 0.730 25 H 0.008 0.992 26 H 0.021 0.979 27 H 0.141 0.859 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.151 0.849 34 H 0.165 0.835 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -23.502 4.454 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.063 4.063 10 S -0.021 6.021 11 C -0.234 4.234 12 H 0.142 0.858 13 C -0.130 4.130 14 C -0.023 4.023 15 N -0.280 5.280 16 C 0.052 3.948 17 C -0.217 4.217 18 C -0.122 4.122 19 C -0.166 4.166 20 C -0.106 4.106 21 C -0.172 4.172 22 C 0.293 3.707 23 O -0.417 6.417 24 H 0.078 0.922 25 H 0.026 0.974 26 H 0.039 0.961 27 H 0.159 0.841 28 H 0.111 0.889 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.168 0.832 34 H 0.183 0.817 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.096 -22.855 4.693 23.426 hybrid contribution -1.450 1.694 0.019 2.230 sum 0.646 -21.161 4.712 21.689 Atomic orbital electron populations 1.70110 1.07996 1.28564 1.49904 1.26028 0.95890 1.03404 0.93685 0.85270 0.78154 0.76755 0.79488 1.18395 1.20038 1.19222 1.20997 0.93411 0.90295 1.53276 0.91723 1.20850 0.94336 0.92928 0.98198 1.86181 1.18161 1.00478 1.97300 1.24052 1.01715 0.99842 0.97768 0.85791 1.22642 0.98088 0.88138 1.04152 1.22697 0.96091 0.92747 0.90804 1.45950 1.52373 1.09487 1.20230 1.18115 0.96610 0.94554 0.85477 1.21609 1.03075 1.00494 0.96518 1.21239 0.98043 0.97555 0.95402 1.21483 1.01478 0.92173 1.01416 1.21421 0.95431 1.01267 0.92485 1.21133 1.04119 0.91824 1.00113 1.21509 0.79227 0.82332 0.87658 1.90686 1.45695 1.42866 1.62407 0.92168 0.97416 0.96087 0.84102 0.88851 0.86100 0.86756 0.87093 0.85304 0.83155 0.81722 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.87 13.29 21.44 0.28 -58.59 16 2 C 0.01 0.63 5.46 84.65 0.46 1.09 16 3 Si 0.98 46.03 29.54 68.60 2.03 48.05 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -33.15 9.13 25.60 0.23 -32.91 16 8 H 0.06 3.85 7.71 -2.91 -0.02 3.83 16 9 C 0.08 4.95 5.43 71.24 0.39 5.34 16 10 S -0.25 -11.33 20.95 -56.49 -1.18 -12.51 16 11 C -0.10 -3.42 3.44 30.58 0.11 -3.32 16 12 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 13 C -0.09 -1.77 6.72 31.65 0.21 -1.56 16 14 C 0.10 1.55 6.27 86.84 0.54 2.10 16 15 N -0.56 -15.93 3.14 -627.69 -1.97 -17.90 16 16 C 0.15 4.16 6.60 38.15 0.25 4.42 16 17 C -0.20 -6.67 9.28 22.39 0.21 -6.46 16 18 C -0.10 -2.74 10.04 22.25 0.22 -2.52 16 19 C -0.15 -2.78 10.04 22.29 0.22 -2.56 16 20 C -0.09 -1.40 10.04 22.25 0.22 -1.17 16 21 C -0.15 -2.85 9.41 22.39 0.21 -2.64 16 22 C 0.51 19.71 7.34 87.90 0.65 20.36 16 23 O -0.54 -27.25 12.75 -3.07 -0.04 -27.29 16 24 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 25 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.02 1.37 6.43 -2.39 -0.02 1.36 16 27 H 0.14 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.09 1.88 7.89 -2.39 -0.02 1.86 16 29 H 0.12 1.19 7.70 -2.39 -0.02 1.17 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 4.79 5.27 -2.91 -0.02 4.78 16 32 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.16 1.78 7.02 -2.91 -0.02 1.76 16 Total: -1.00 -82.85 307.23 4.14 -78.71 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.09 Total: 9.37 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 3.93 Total: -19.84 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -1.68 Total: -76.49 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.04 Total: -27.29 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 16 Polarization: -11.33 SS G_CDS: -1.18 Total: -12.51 kcal Total: -82.85 4.14 -78.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009601.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.519 kcal (2) G-P(sol) polarization free energy of solvation -82.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds