Wall clock time and date at job start Thu Apr 9 2020 13:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47251 * 269.99814 * 3 2 1 5 5 H 1.48497 * 109.47511 * 30.00235 * 3 2 1 6 6 H 1.48510 * 109.47387 * 150.00086 * 3 2 1 7 7 C 1.37875 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00234 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46820 * 299.99896 * 9 7 2 11 11 O 1.42905 * 109.47203 * 59.99588 * 9 7 2 12 12 C 1.52995 * 109.47523 * 179.97438 * 9 7 2 13 13 N 1.46500 * 109.47335 * 180.02562 * 12 9 7 14 14 C 1.35488 * 127.81989 * 275.63569 * 13 12 9 15 15 O 1.21608 * 126.87273 * 359.97438 * 14 13 12 16 16 O 1.34234 * 106.24979 * 180.23629 * 14 13 12 17 17 N 1.21004 * 110.89481 * 359.75505 * 16 14 13 18 18 C 1.29921 * 111.54693 * 0.02562 * 17 16 14 19 19 C 1.48083 * 126.52338 * 179.97438 * 18 17 16 20 20 C 1.39888 * 120.54739 * 215.61354 * 19 18 17 21 21 C 1.38390 * 118.30198 * 180.02562 * 20 19 18 22 22 C 1.38331 * 119.29411 * 0.02562 * 21 20 19 23 23 N 1.31907 * 121.05043 * 359.97438 * 22 21 20 24 24 C 1.31717 * 121.86758 * 0.02562 * 23 22 21 25 25 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 26 26 H 0.96696 * 113.99537 * 60.00080 * 11 9 7 27 27 H 1.09003 * 109.47164 * 59.99985 * 12 9 7 28 28 H 1.08995 * 109.47393 * 300.00288 * 12 9 7 29 29 H 1.08004 * 120.84996 * 359.75267 * 20 19 18 30 30 H 1.08006 * 120.35349 * 179.97438 * 21 20 19 31 31 H 1.08000 * 119.47363 * 179.97438 * 22 21 20 32 32 H 1.08002 * 119.71283 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 8 0.4298 -2.5751 -1.1665 12 6 2.2451 -3.6621 0.0005 13 7 1.5126 -4.9308 -0.0001 14 6 1.0058 -5.5981 1.0647 15 8 1.0666 -5.2630 2.2321 16 8 0.4284 -6.7059 0.5736 17 7 0.5372 -6.7517 -0.6307 18 6 1.1786 -5.7200 -1.0914 19 6 1.4972 -5.4420 -2.5106 20 6 2.7020 -4.8233 -2.8607 21 6 2.9520 -4.5850 -4.2009 22 6 2.0113 -4.9622 -5.1424 23 7 0.8837 -5.5441 -4.7822 24 6 0.6011 -5.7916 -3.5197 25 1 -0.4850 0.8401 0.0004 26 1 0.9222 -2.5299 -1.9975 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8894 29 1 3.4168 -4.5348 -2.1042 30 1 3.8714 -4.1089 -4.5083 31 1 2.2033 -4.7773 -6.1890 32 1 -0.3330 -6.2695 -3.2639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436472809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:38 Heat of formation + Delta-G solvation = -9.134790 kcal Electronic energy + Delta-G solvation = -21586.794942 eV Core-core repulsion = 18129.407048 eV Total energy + Delta-G solvation = -3457.387894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.39171 -41.15396 -39.87741 -38.63834 -37.04613 -34.33509 -34.05964 -33.34462 -31.73108 -30.96745 -27.91648 -26.15872 -25.10727 -24.35820 -23.09697 -22.75036 -19.71583 -19.51845 -18.95776 -18.25345 -17.79320 -17.40784 -16.96179 -16.73110 -16.54281 -16.21886 -15.76299 -15.20165 -15.04034 -14.83648 -14.69886 -14.27029 -14.04731 -13.64501 -13.12313 -13.03802 -12.87559 -12.82111 -12.69781 -12.10156 -11.89049 -11.49362 -10.92521 -10.79732 -10.66764 -10.51505 -10.14130 -9.80973 -8.19956 -6.48448 -0.47005 0.21720 0.54198 0.78178 1.00645 1.42318 1.44812 1.54542 2.10151 2.36726 2.67207 2.89292 3.07832 3.29442 3.49597 3.57974 3.73557 3.89506 4.04552 4.13230 4.17137 4.41268 4.44835 4.60107 4.75932 4.86020 5.00203 5.12762 5.43470 5.60085 5.61853 5.87304 6.19067 6.63146 6.87461 6.92669 7.23708 7.38923 8.85181 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.007236 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.461145 B = 3868.439266 C = 5212.384981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.259 1.259 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.220 3.780 10 H 0.010 0.990 11 O -0.569 6.569 12 C 0.108 3.892 13 N -0.530 5.530 14 C 0.551 3.449 15 O -0.517 6.517 16 O -0.012 6.012 17 N -0.349 5.349 18 C 0.302 3.698 19 C -0.093 4.093 20 C -0.051 4.051 21 C -0.152 4.152 22 C 0.119 3.881 23 N -0.501 5.501 24 C 0.143 3.857 25 H 0.262 0.738 26 H 0.355 0.645 27 H 0.102 0.898 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.184 0.816 31 H 0.197 0.803 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.498 -8.467 -11.458 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.183 1.183 7 C -0.621 4.621 8 H 0.099 0.901 9 C 0.161 3.839 10 H 0.028 0.972 11 O -0.373 6.373 12 C -0.009 4.009 13 N -0.265 5.265 14 C 0.304 3.696 15 O -0.399 6.399 16 O -0.052 6.052 17 N -0.086 5.086 18 C 0.033 3.967 19 C -0.098 4.098 20 C -0.078 4.078 21 C -0.171 4.171 22 C -0.038 4.038 23 N -0.210 5.210 24 C -0.015 4.015 25 H 0.071 0.929 26 H 0.200 0.800 27 H 0.120 0.880 28 H 0.150 0.850 29 H 0.173 0.827 30 H 0.201 0.799 31 H 0.214 0.786 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.786 -9.405 -11.152 16.536 hybrid contribution 1.052 1.803 1.281 2.449 sum 8.839 -7.602 -9.871 15.276 Atomic orbital electron populations 1.70239 1.08071 1.27647 1.47653 1.25948 0.95380 1.03310 0.93030 0.85457 0.78668 0.78171 0.78693 1.19178 1.21882 1.18293 1.21819 0.94184 0.90981 1.55101 0.90058 1.19518 0.88189 0.90933 0.85215 0.97203 1.86610 1.38768 1.96290 1.15636 1.23094 0.94636 0.76925 1.06293 1.47162 1.50341 1.22758 1.06189 1.20732 0.80777 0.81412 0.86719 1.91108 1.63318 1.70715 1.14805 1.85511 1.64967 1.38807 1.15892 1.74171 1.22216 1.20926 0.91326 1.22847 0.95254 0.87289 0.91266 1.18398 0.98966 1.06868 0.85528 1.22010 0.94230 0.92655 0.98868 1.22502 1.02778 1.00316 0.91516 1.23689 0.87525 0.90097 1.02515 1.67845 1.21252 1.13842 1.18020 1.22854 0.97934 0.93652 0.87097 0.92949 0.79967 0.87994 0.84966 0.82735 0.79888 0.78643 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.96 12.84 21.45 0.28 -51.68 16 2 C 0.03 1.39 5.40 84.65 0.46 1.84 16 3 Si 0.97 40.14 29.54 68.60 2.03 42.17 16 4 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.58 -28.56 8.76 25.60 0.22 -28.33 16 8 H 0.08 3.59 7.74 -2.91 -0.02 3.56 16 9 C 0.22 10.37 3.10 29.85 0.09 10.47 16 10 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 11 O -0.57 -26.99 12.59 -148.98 -1.88 -28.86 16 12 C 0.11 3.80 5.68 86.38 0.49 4.29 16 13 N -0.53 -18.91 2.73 -762.81 -2.08 -20.99 16 14 C 0.55 22.36 9.34 129.69 1.21 23.57 16 15 O -0.52 -24.11 18.00 19.05 0.34 -23.77 16 16 O -0.01 -0.44 11.25 92.79 1.04 0.61 16 17 N -0.35 -11.72 12.04 -54.07 -0.65 -12.37 16 18 C 0.30 9.50 7.56 136.27 1.03 10.53 16 19 C -0.09 -2.35 5.82 -19.98 -0.12 -2.47 16 20 C -0.05 -0.96 8.91 22.71 0.20 -0.76 16 21 C -0.15 -2.05 10.10 22.33 0.23 -1.83 16 22 C 0.12 1.84 11.17 84.70 0.95 2.79 16 23 N -0.50 -11.33 10.35 -194.86 -2.02 -13.35 16 24 C 0.14 3.57 10.93 84.99 0.93 4.50 16 25 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.36 14.34 9.04 -74.06 -0.67 13.67 16 27 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 28 H 0.13 3.54 4.73 -2.39 -0.01 3.53 16 29 H 0.16 2.49 5.86 -2.91 -0.02 2.48 16 30 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 31 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 32 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -70.47 293.56 3.28 -67.19 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.52 Total: 16.44 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: 5.69 Total: 24.61 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -4.47 Total: -98.38 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.49 Total: -52.03 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -70.47 3.28 -67.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436472809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.051 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds