Wall clock time and date at job start Thu Apr 9 2020 13:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38392 * 119.92783 * 2 1 4 4 C 1.38359 * 120.30848 * 180.28370 * 3 2 1 5 5 C 1.37957 * 120.14587 * 359.44235 * 4 3 2 6 6 C 1.39622 * 119.84821 * 0.28545 * 5 4 3 7 7 C 1.47725 * 120.15040 * 180.02562 * 6 5 4 8 8 O 1.21597 * 120.00048 * 124.86090 * 7 6 5 9 9 N 1.34775 * 119.99883 * 304.86171 * 7 6 5 10 10 C 1.36877 * 119.99911 * 184.13847 * 9 7 6 11 11 H 1.08000 * 120.00237 * 337.68454 * 10 9 7 12 12 C 1.39047 * 119.99852 * 157.67762 * 10 9 7 13 13 N 1.31367 * 120.00248 * 355.26772 * 12 10 9 14 14 Si 1.86805 * 119.99983 * 175.26856 * 12 10 9 15 15 H 1.48506 * 109.46881 * 60.00260 * 14 12 10 16 16 H 1.48499 * 109.47133 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47180 * 300.00376 * 14 12 10 18 18 C 1.46493 * 120.00273 * 4.14596 * 9 7 6 19 19 C 1.50697 * 109.46934 * 276.80755 * 18 9 7 20 20 O 1.20830 * 120.00273 * 0.02562 * 19 18 9 21 21 O 1.34231 * 120.00173 * 179.97438 * 19 18 9 22 22 C 1.37917 * 119.92026 * 179.73225 * 2 1 3 23 23 C 1.50694 * 120.07871 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.47194 * 270.27378 * 1 2 3 25 25 H 1.09004 * 109.47265 * 30.27108 * 1 2 3 26 26 H 1.09000 * 109.47773 * 150.26918 * 1 2 3 27 27 H 1.08004 * 119.84701 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.92391 * 179.72497 * 4 3 2 29 29 H 1.08004 * 120.07083 * 180.29988 * 5 4 3 30 30 H 0.96994 * 120.00360 * 179.97438 * 13 12 10 31 31 H 1.08999 * 109.47431 * 36.80748 * 18 9 7 32 32 H 1.08997 * 109.47758 * 156.80850 * 18 9 7 33 33 H 0.96700 * 117.00299 * 179.97438 * 21 19 18 34 34 H 1.09006 * 109.46797 * 275.74407 * 23 22 2 35 35 H 1.08999 * 109.47717 * 35.74786 * 23 22 2 36 36 H 1.09008 * 109.47418 * 155.74893 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5809 1.2086 -0.0059 5 6 4.2817 0.0203 -0.0002 6 6 3.5916 -1.1934 0.0055 7 6 4.3352 -2.4698 0.0121 8 8 4.1208 -3.2939 0.8802 9 7 5.2514 -2.7210 -0.9440 10 6 5.8792 -3.9365 -0.9878 11 1 5.9328 -4.5490 -0.0999 12 6 6.4479 -4.3827 -2.1756 13 7 6.3027 -3.6821 -3.2774 14 14 7.4184 -5.9786 -2.2048 15 1 6.5402 -7.0998 -1.7841 16 1 7.9163 -6.2301 -3.5810 17 1 8.5696 -5.8749 -1.2725 18 6 5.5753 -1.6930 -1.9361 19 6 4.5592 -1.7305 -3.0484 20 8 3.6567 -2.5332 -3.0154 21 8 4.6561 -0.8715 -4.0753 22 6 2.1949 -1.1953 0.0056 23 6 1.4414 -2.5004 0.0111 24 1 -0.3634 0.0049 1.0277 25 1 -0.3634 0.8876 -0.5181 26 1 -0.3635 -0.8924 -0.5096 27 1 1.6537 2.1326 0.0004 28 1 4.1134 2.1482 -0.0104 29 1 5.3617 0.0289 0.0000 30 1 6.6997 -3.9932 -4.1058 31 1 5.5586 -0.7119 -1.4616 32 1 6.5681 -1.8821 -2.3445 33 1 3.9813 -0.9339 -4.7651 34 1 1.1702 -2.7590 1.0347 35 1 0.5376 -2.4008 -0.5901 36 1 2.0713 -3.2855 -0.4073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738682455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:08 Heat of formation + Delta-G solvation = -87.122177 kcal Electronic energy + Delta-G solvation = -22506.317499 eV Core-core repulsion = 19149.088162 eV Total energy + Delta-G solvation = -3357.229337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.96763 -38.84953 -37.62934 -35.23300 -34.51395 -33.15881 -31.97788 -31.29365 -27.88014 -27.29844 -26.09353 -25.00248 -22.55105 -21.04867 -20.46018 -19.10653 -17.22242 -16.88301 -16.32744 -15.89905 -15.53349 -15.16649 -14.80915 -14.42927 -14.16006 -13.88240 -13.55002 -13.09173 -12.75256 -12.59901 -12.36512 -12.23030 -11.97321 -11.79448 -11.51031 -11.32736 -11.25239 -10.95250 -10.92037 -10.52442 -10.47604 -10.40455 -10.31010 -9.60569 -9.06765 -8.65974 -8.26972 -8.19258 -7.91224 -6.45560 -4.00384 1.53277 1.71913 3.14976 3.21001 3.24341 3.49364 3.67826 3.91338 4.15815 4.34407 4.72880 5.01886 5.08056 5.18584 5.29877 5.41645 5.46080 5.66940 5.71960 5.89064 5.94859 6.01472 6.11670 6.23091 6.31510 6.36334 6.51660 6.69304 6.74718 6.77784 6.79161 7.06275 7.32601 7.45607 7.55002 7.96400 8.32782 9.01347 9.07617 9.24691 9.78483 10.59744 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.006879 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.160647 B = 4069.131432 C = 4467.382200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.118 4.118 4 C -0.128 4.128 5 C -0.112 4.112 6 C -0.092 4.092 7 C 0.501 3.499 8 O -0.569 6.569 9 N -0.423 5.423 10 C -0.298 4.298 11 H 0.107 0.893 12 C 0.030 3.970 13 N -0.892 5.892 14 Si 0.939 3.061 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.134 3.866 19 C 0.496 3.504 20 O -0.511 6.511 21 O -0.533 6.533 22 C -0.039 4.039 23 C -0.113 4.113 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.273 0.727 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.390 0.610 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 10.088 0.613 11.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.136 4.136 4 C -0.146 4.146 5 C -0.131 4.131 6 C -0.096 4.096 7 C 0.290 3.710 8 O -0.453 6.453 9 N -0.141 5.141 10 C -0.425 4.425 11 H 0.125 0.875 12 C -0.172 4.172 13 N -0.533 5.533 14 Si 0.765 3.235 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.197 1.197 18 C 0.008 3.992 19 C 0.337 3.663 20 O -0.397 6.397 21 O -0.344 6.344 22 C -0.040 4.040 23 C -0.169 4.169 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.146 0.854 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.157 0.843 33 H 0.246 0.754 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.734 9.400 1.169 10.589 hybrid contribution 0.096 -0.732 -0.924 1.182 sum -4.638 8.668 0.245 9.834 Atomic orbital electron populations 1.20800 0.91435 1.02607 1.02029 1.19646 0.95863 0.92493 1.01726 1.20976 0.94214 0.96977 1.01444 1.20940 0.94166 0.97562 1.01887 1.21332 0.99806 0.91739 1.00189 1.20189 0.93840 0.94359 1.01168 1.17972 0.80746 0.86693 0.85552 1.90629 1.67144 1.48633 1.38851 1.43277 1.33856 1.13246 1.23731 1.19723 1.30537 0.94925 0.97332 0.87535 1.25353 0.98198 0.99427 0.94200 1.69614 1.44463 1.39207 0.99970 0.85791 0.79357 0.81117 0.77222 1.19761 1.20883 1.19733 1.21121 0.99561 0.91566 0.86958 1.23751 0.84431 0.76232 0.81894 1.90584 1.35046 1.36401 1.77636 1.84525 1.56353 1.59193 1.34322 1.19707 0.92169 0.95188 0.96965 1.20823 0.99534 0.94742 1.01829 0.91416 0.91957 0.91192 0.86429 0.86045 0.85431 0.91629 0.90075 0.84308 0.75417 0.91182 0.92035 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.60 36.00 0.35 -1.04 16 2 C -0.10 -1.55 5.87 -104.69 -0.61 -2.17 16 3 C -0.12 -1.69 9.69 -39.48 -0.38 -2.07 16 4 C -0.13 -1.88 10.03 -39.64 -0.40 -2.27 16 5 C -0.11 -1.98 7.83 -39.17 -0.31 -2.29 16 6 C -0.09 -1.96 4.84 -104.97 -0.51 -2.47 16 7 C 0.50 12.71 5.75 -12.38 -0.07 12.64 16 8 O -0.57 -16.03 15.69 5.28 0.08 -15.95 16 9 N -0.42 -10.85 2.19 -117.22 -0.26 -11.11 16 10 C -0.30 -8.16 9.34 -15.00 -0.14 -8.30 16 11 H 0.11 3.02 7.35 -52.49 -0.39 2.63 16 12 C 0.03 0.78 5.22 -17.45 -0.09 0.69 16 13 N -0.89 -23.15 8.78 55.50 0.49 -22.66 16 14 Si 0.94 20.63 29.56 -169.99 -5.02 15.60 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 C 0.13 3.02 4.91 -5.20 -0.03 2.99 16 19 C 0.50 11.39 6.18 36.00 0.22 11.62 16 20 O -0.51 -13.48 16.88 -18.75 -0.32 -13.79 16 21 O -0.53 -10.07 13.42 -39.26 -0.53 -10.60 16 22 C -0.04 -0.77 5.91 -104.21 -0.62 -1.38 16 23 C -0.11 -2.18 8.78 36.00 0.32 -1.86 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.07 0.86 6.03 -51.93 -0.31 0.55 16 27 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.13 2.08 6.66 -52.48 -0.35 1.73 16 30 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.08 1.57 4.17 -51.93 -0.22 1.35 16 32 H 0.14 3.24 6.18 -51.93 -0.32 2.92 16 33 H 0.39 5.73 9.10 45.56 0.41 6.15 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.01 6.19 -51.93 -0.32 0.69 16 36 H 0.08 1.84 6.55 -51.92 -0.34 1.50 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -33.11 302.83 -6.34 -39.45 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -3.08 Total: 10.42 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.27 Total: 4.08 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.23 Total: -33.77 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.76 Total: -40.34 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.11 -6.34 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738682455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.674 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds