Wall clock time and date at job start Thu Apr 9 2020 13:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48495 * 109.47504 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47368 * 59.99878 * 3 2 1 6 6 H 1.48506 * 109.47041 * 299.99994 * 3 2 1 7 7 C 1.38701 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99584 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.35508 * 117.00117 * 174.91666 * 9 7 2 11 11 C 1.38833 * 120.16661 * 5.20118 * 10 9 7 12 12 C 1.38017 * 120.07878 * 180.02562 * 11 10 9 13 13 C 1.38576 * 120.40140 * 359.97438 * 12 11 10 14 14 C 1.37827 * 120.32171 * 359.97438 * 13 12 11 15 15 C 1.39672 * 119.91909 * 359.78956 * 14 13 12 16 16 C 1.47531 * 120.19639 * 180.23455 * 15 14 13 17 17 O 1.21592 * 120.00317 * 134.87958 * 16 15 14 18 18 N 1.34779 * 120.00222 * 314.87315 * 16 15 14 19 19 C 1.47026 * 125.64320 * 354.86661 * 18 16 15 20 20 C 1.54324 * 107.26869 * 181.02214 * 19 18 16 21 21 C 1.55160 * 102.94441 * 22.19166 * 20 19 18 22 22 H 1.08995 * 111.00131 * 82.57046 * 21 20 19 23 23 O 1.42898 * 111.00661 * 206.38829 * 21 20 19 24 24 C 1.47421 * 125.65326 * 174.55839 * 18 16 15 25 25 H 0.97010 * 119.99431 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.96240 * 0.02562 * 11 10 9 27 27 H 1.08002 * 119.80386 * 179.97438 * 12 11 10 28 28 H 1.07995 * 119.84180 * 179.97438 * 13 12 11 29 29 H 1.07998 * 120.04236 * 180.02562 * 14 13 12 30 30 H 1.08997 * 109.88771 * 300.43731 * 19 18 16 31 31 H 1.08996 * 109.88478 * 61.60994 * 19 18 16 32 32 H 1.08998 * 110.72434 * 140.55872 * 20 19 18 33 33 H 1.09003 * 110.72126 * 263.64984 * 20 19 18 34 34 H 0.96695 * 113.99920 * 180.02562 * 23 21 20 35 35 H 1.08997 * 110.36766 * 274.74876 * 24 18 16 36 36 H 1.09002 * 110.36361 * 37.07099 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8904 2.3965 1.2125 6 1 1.8904 2.3965 -1.2126 7 6 2.0088 -1.2012 0.0005 8 1 3.0888 -1.2010 0.0001 9 8 1.3348 -2.3687 0.0005 10 6 2.0688 -3.5028 -0.1059 11 6 3.4557 -3.4393 -0.1002 12 6 4.2015 -4.5955 -0.2092 13 6 3.5748 -5.8260 -0.3245 14 6 2.1990 -5.9083 -0.3309 15 6 1.4311 -4.7473 -0.2164 16 6 -0.0419 -4.8288 -0.2174 17 8 -0.6865 -4.1949 0.5957 18 7 -0.6733 -5.6058 -1.1197 19 6 -0.0290 -6.3375 -2.2203 20 6 -1.1438 -7.0641 -3.0018 21 6 -2.4119 -6.2469 -2.6392 22 1 -2.4960 -5.3583 -3.2648 23 8 -3.5871 -7.0536 -2.7391 24 6 -2.1234 -5.8680 -1.1629 25 1 -0.4850 -0.8402 -0.0004 26 1 3.9516 -2.4840 -0.0103 27 1 5.2802 -4.5409 -0.2047 28 1 4.1673 -6.7249 -0.4097 29 1 1.7153 -6.8697 -0.4206 30 1 0.4890 -5.6386 -2.8770 31 1 0.6767 -7.0647 -1.8189 32 1 -0.9524 -7.0235 -4.0741 33 1 -1.2388 -8.0972 -2.6674 34 1 -4.4050 -6.5856 -2.5221 35 1 -2.3794 -6.6943 -0.4998 36 1 -2.6792 -4.9721 -0.8860 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746638361.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:22 Heat of formation + Delta-G solvation = -107.578603 kcal Electronic energy + Delta-G solvation = -21551.357424 eV Core-core repulsion = 18193.241029 eV Total energy + Delta-G solvation = -3358.116394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.63352 -40.45904 -38.89518 -38.21410 -36.61145 -34.38171 -32.74824 -31.49370 -30.65648 -29.47177 -27.03189 -25.59955 -23.59715 -23.29337 -22.14243 -20.88796 -20.33994 -18.95163 -18.65850 -18.03706 -17.26355 -16.82216 -16.45204 -15.98673 -15.89693 -15.56989 -15.42933 -15.13202 -15.03533 -14.58236 -14.29694 -14.03576 -13.86066 -13.19419 -13.04681 -12.85036 -12.59666 -12.51207 -12.46444 -12.35174 -11.91958 -11.77173 -11.53935 -11.20734 -10.91387 -10.83968 -9.99468 -9.72656 -9.18425 -9.00699 -6.30945 0.09062 0.60549 1.44913 1.60546 1.62740 1.73103 1.89661 2.31521 2.78188 3.07620 3.11244 3.20532 3.39194 3.54824 3.76488 3.96357 3.96707 4.16331 4.20742 4.35084 4.43897 4.49691 4.56771 4.69800 4.72993 4.80008 4.91292 5.02742 5.08112 5.14403 5.28478 5.42630 5.56069 5.60684 5.96346 6.17595 6.33303 6.70923 6.80347 7.08570 7.56825 8.42362 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.005768 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.238419 B = 4853.489518 C = 6053.289502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.046 4.046 3 Si 1.154 2.846 4 H -0.252 1.252 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.492 4.492 8 H 0.099 0.901 9 O -0.232 6.232 10 C 0.150 3.850 11 C -0.248 4.248 12 C -0.042 4.042 13 C -0.187 4.187 14 C -0.036 4.036 15 C -0.232 4.232 16 C 0.578 3.422 17 O -0.586 6.586 18 N -0.618 5.618 19 C 0.095 3.905 20 C -0.111 4.111 21 C 0.101 3.899 22 H 0.076 0.924 23 O -0.560 6.560 24 C 0.070 3.930 25 H 0.257 0.743 26 H 0.124 0.876 27 H 0.158 0.842 28 H 0.169 0.831 29 H 0.156 0.844 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.399 0.601 35 H 0.081 0.919 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -15.744 -7.907 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.243 4.243 3 Si 0.969 3.031 4 H -0.175 1.175 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.117 0.883 9 O -0.137 6.137 10 C 0.097 3.903 11 C -0.267 4.267 12 C -0.060 4.060 13 C -0.206 4.206 14 C -0.054 4.054 15 C -0.236 4.236 16 C 0.369 3.631 17 O -0.467 6.467 18 N -0.353 5.353 19 C -0.026 4.026 20 C -0.149 4.149 21 C 0.041 3.959 22 H 0.094 0.906 23 O -0.367 6.367 24 C -0.053 4.053 25 H 0.066 0.934 26 H 0.141 0.859 27 H 0.176 0.824 28 H 0.186 0.814 29 H 0.173 0.827 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.249 0.751 35 H 0.099 0.901 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.360 -14.134 -7.592 16.392 hybrid contribution -0.751 -0.718 0.624 1.212 sum 2.608 -14.853 -6.968 16.612 Atomic orbital electron populations 1.70608 1.08081 1.30059 1.45805 1.28607 0.96776 1.05325 0.93563 0.82490 0.74143 0.68231 0.78269 1.17539 1.19763 1.19335 1.22807 0.93911 0.82833 1.57230 0.88318 1.83733 1.36815 1.13180 1.79948 1.19822 0.91718 0.86480 0.92281 1.21308 0.92066 1.01135 1.12223 1.21456 1.00903 0.91047 0.92624 1.21221 0.93570 0.98603 1.07160 1.21280 0.94431 0.95421 0.94231 1.19087 0.91760 0.93127 1.19669 1.18239 0.88010 0.77122 0.79699 1.90757 1.68823 1.45448 1.41631 1.48220 1.08574 1.48312 1.30192 1.22443 0.96958 0.95691 0.87519 1.22657 0.90217 0.99991 1.01999 1.22852 0.86997 0.94134 0.91951 0.90638 1.86445 1.17143 1.41375 1.91727 1.23072 0.81308 1.00852 1.00071 0.93449 0.85856 0.82445 0.81387 0.82668 0.91547 0.88338 0.87049 0.88122 0.75084 0.90091 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.74 13.70 21.62 0.30 -60.45 16 2 C -0.05 -2.77 5.49 84.85 0.47 -2.30 16 3 Si 1.15 49.57 29.92 68.60 2.05 51.62 16 4 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.49 -29.85 9.49 67.93 0.64 -29.20 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 9 O -0.23 -14.62 8.10 -8.01 -0.06 -14.68 16 10 C 0.15 7.72 6.63 22.91 0.15 7.87 16 11 C -0.25 -10.58 9.16 22.36 0.20 -10.38 16 12 C -0.04 -1.29 10.03 22.30 0.22 -1.07 16 13 C -0.19 -4.90 10.03 22.25 0.22 -4.68 16 14 C -0.04 -1.10 8.43 22.52 0.19 -0.91 16 15 C -0.23 -10.18 5.39 -19.99 -0.11 -10.29 16 16 C 0.58 27.03 7.16 86.69 0.62 27.65 16 17 O -0.59 -34.19 16.61 7.87 0.13 -34.06 16 18 N -0.62 -21.41 3.32 -815.12 -2.71 -24.12 16 19 C 0.10 2.25 5.92 86.73 0.51 2.77 16 20 C -0.11 -1.95 6.68 31.78 0.21 -1.74 16 21 C 0.10 2.16 4.44 32.06 0.14 2.31 16 22 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 23 O -0.56 -10.34 13.47 -148.98 -2.01 -12.34 16 24 C 0.07 2.07 6.68 86.93 0.58 2.65 16 25 H 0.26 18.50 7.97 -92.70 -0.74 17.76 16 26 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 27 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 28 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.16 3.59 6.19 -2.91 -0.02 3.57 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.10 1.85 5.76 -2.39 -0.01 1.84 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.40 4.47 9.12 -74.06 -0.68 3.80 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 1.83 7.99 -2.39 -0.02 1.81 16 Total: -1.00 -88.89 306.63 2.24 -86.65 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.48 Total: 24.70 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 4.06 Total: -17.32 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -2.41 Total: -84.57 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -1.94 Total: -61.09 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.05 Total: 51.62 kcal Total: -88.89 2.24 -86.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746638361.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.928 kcal (2) G-P(sol) polarization free energy of solvation -88.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds