Wall clock time and date at job start Thu Apr 9 2020 13:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.46755 * 2 1 4 4 N 1.32620 * 120.41585 * 269.97632 * 3 2 1 5 5 C 1.31727 * 121.03710 * 180.02562 * 4 3 2 6 6 N 1.31793 * 121.88811 * 359.73525 * 5 4 3 7 7 C 1.32952 * 120.70066 * 0.52683 * 6 5 4 8 8 N 1.38659 * 120.54247 * 179.76433 * 7 6 5 9 9 C 1.40553 * 119.99765 * 359.44548 * 8 7 6 10 10 C 1.40672 * 126.08380 * 359.96650 * 9 8 7 11 11 N 1.30910 * 108.38849 * 179.81292 * 10 9 8 12 12 N 1.40074 * 108.41245 * 0.44528 * 11 10 9 13 13 C 1.37304 * 126.07078 * 179.68149 * 12 11 10 14 14 H 1.07997 * 120.00198 * 180.02562 * 13 12 11 15 15 C 1.38986 * 120.00249 * 0.03923 * 13 12 11 16 16 N 1.31307 * 119.99478 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00041 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47020 * 60.00336 * 17 15 13 19 19 H 1.48498 * 109.47254 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47214 * 300.00376 * 17 15 13 21 21 C 1.35685 * 126.07822 * 180.27727 * 9 8 7 22 22 C 1.38239 * 120.41853 * 90.00140 * 3 2 1 23 23 F 1.35100 * 120.84977 * 359.95347 * 22 3 2 24 24 H 1.08994 * 109.46976 * 300.00042 * 1 2 3 25 25 H 1.08996 * 109.47182 * 60.00160 * 1 2 3 26 26 H 1.08999 * 109.46892 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46976 * 239.99958 * 2 1 3 28 28 H 1.08996 * 109.47182 * 119.99839 * 2 1 3 29 29 H 1.08004 * 119.05301 * 179.97438 * 5 4 3 30 30 H 0.97001 * 120.00252 * 179.72773 * 8 7 6 31 31 H 1.07993 * 125.80346 * 0.02562 * 10 9 8 32 32 H 0.97004 * 119.99234 * 179.97438 * 16 15 13 33 33 H 1.07996 * 126.25004 * 359.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2565 2.0537 -1.1437 5 6 2.6960 3.2954 -1.1580 6 7 2.9272 3.9649 -0.0466 7 6 2.7319 3.3984 1.1403 8 7 2.9808 4.1042 2.3075 9 6 3.4548 5.4258 2.2420 10 6 3.7204 6.1535 1.0678 11 7 4.1419 7.3456 1.4071 12 7 4.1720 7.4228 2.8054 13 6 4.5638 8.5100 3.5468 14 1 4.5488 8.4617 4.6256 15 6 4.9797 9.6727 2.9090 16 7 4.9973 9.7316 1.5974 17 14 5.5135 11.1515 3.9177 18 1 6.6698 10.7773 4.7710 19 1 5.9083 12.2557 3.0066 20 1 4.3875 11.5969 4.7773 21 6 3.7431 6.2247 3.3002 22 6 2.2656 2.0807 1.1921 23 9 2.0483 1.4687 2.3768 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.8681 3.7799 -2.1077 30 1 2.8319 3.6846 3.1692 31 1 3.5943 5.7916 0.0581 32 1 5.2872 10.5432 1.1523 33 1 3.6499 5.9611 4.3434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767218119.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:28 Heat of formation + Delta-G solvation = 72.474627 kcal Electronic energy + Delta-G solvation = -20507.170770 eV Core-core repulsion = 17097.987266 eV Total energy + Delta-G solvation = -3409.183503 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.93808 -42.02127 -41.26736 -37.64789 -35.60558 -35.13424 -32.73520 -32.28551 -31.31874 -29.21465 -26.96736 -25.62573 -25.05807 -22.87785 -22.50491 -21.40001 -19.72367 -19.30403 -18.43099 -18.02226 -17.40607 -17.20060 -16.60779 -16.21391 -15.57181 -15.54580 -15.20988 -15.02906 -14.92229 -14.64734 -14.16809 -13.77536 -13.46955 -13.22924 -13.07455 -12.89492 -12.70880 -12.44285 -12.28280 -12.13626 -11.88292 -11.33289 -10.90423 -10.81319 -10.13760 -10.03880 -9.95768 -8.47045 -8.30942 -6.21692 -0.15542 0.10007 1.32546 1.39430 1.55374 1.77387 1.84769 2.17841 2.39909 2.78695 2.81230 2.90049 3.08512 3.10882 3.37343 3.68181 3.97600 4.35301 4.37843 4.41837 4.52990 4.59095 4.77285 4.95892 5.02414 5.05323 5.12238 5.26892 5.29525 5.40377 5.72864 5.88735 6.04913 6.39845 6.54097 6.80194 7.22689 7.44751 7.69246 8.51935 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.047985 B = 0.003703 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.372098 B = 7560.060903 C = 8037.339612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 C 0.183 3.817 4 N -0.552 5.552 5 C 0.331 3.669 6 N -0.576 5.576 7 C 0.406 3.594 8 N -0.593 5.593 9 C -0.046 4.046 10 C -0.045 4.045 11 N -0.309 5.309 12 N -0.169 5.169 13 C -0.357 4.357 14 H 0.136 0.864 15 C -0.004 4.004 16 N -0.821 5.821 17 Si 1.018 2.982 18 H -0.255 1.255 19 H -0.276 1.276 20 H -0.255 1.255 21 C -0.087 4.087 22 C -0.089 4.089 23 F -0.126 7.126 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.229 0.771 30 H 0.425 0.575 31 H 0.197 0.803 32 H 0.277 0.723 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 -14.759 -0.243 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 C 0.039 3.961 4 N -0.272 5.272 5 C 0.043 3.957 6 N -0.301 5.301 7 C 0.160 3.840 8 N -0.215 5.215 9 C -0.153 4.153 10 C -0.221 4.221 11 N -0.140 5.140 12 N 0.063 4.937 13 C -0.488 4.488 14 H 0.153 0.847 15 C -0.216 4.216 16 N -0.448 5.448 17 Si 0.836 3.164 18 H -0.179 1.179 19 H -0.201 1.201 20 H -0.179 1.179 21 C -0.238 4.238 22 C -0.120 4.120 23 F -0.105 7.105 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.245 0.755 30 H 0.264 0.736 31 H 0.213 0.787 32 H 0.087 0.913 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.086 -12.874 -1.626 13.937 hybrid contribution -0.161 -0.515 1.913 1.987 sum -5.247 -13.389 0.287 14.383 Atomic orbital electron populations 1.21662 0.92573 1.03708 1.01739 1.20629 0.97614 0.87494 1.05344 1.22061 0.90077 0.98109 0.85811 1.68403 1.19477 1.11199 1.28085 1.25423 0.86954 0.86710 0.96597 1.68201 1.25573 1.38587 0.97706 1.18845 0.90065 0.87199 0.87905 1.40973 1.64698 1.10503 1.05370 1.17325 1.17475 0.86806 0.93649 1.24700 1.05521 0.91795 1.00099 1.78155 1.26353 1.18993 0.90460 1.44809 1.36441 1.08426 1.04033 1.20522 1.46009 0.90137 0.92110 0.84672 1.26815 0.95241 1.02478 0.97040 1.70376 1.36024 1.28565 1.09862 0.84675 0.79434 0.74823 0.77430 1.17950 1.20055 1.17932 1.21870 1.14767 0.88425 0.98710 1.18412 1.17121 0.92411 0.84037 1.91436 1.93520 1.82150 1.43389 0.93430 0.92704 0.89123 0.87803 0.88653 0.75516 0.73624 0.78676 0.91320 0.80414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.90 71.98 0.71 -1.46 16 2 C -0.07 -1.30 6.11 29.85 0.18 -1.12 16 3 C 0.18 4.73 6.07 42.44 0.26 4.99 16 4 N -0.55 -14.95 10.37 -188.22 -1.95 -16.90 16 5 C 0.33 9.42 12.28 180.90 2.22 11.64 16 6 N -0.58 -20.41 6.64 -197.36 -1.31 -21.72 16 7 C 0.41 14.16 7.49 133.20 1.00 15.16 16 8 N -0.59 -21.67 5.60 -185.24 -1.04 -22.71 16 9 C -0.05 -2.09 6.92 37.74 0.26 -1.83 16 10 C -0.04 -2.28 10.86 85.42 0.93 -1.36 16 11 N -0.31 -18.04 10.40 -56.45 -0.59 -18.63 16 12 N -0.17 -9.34 3.74 -190.00 -0.71 -10.05 16 13 C -0.36 -18.95 10.25 84.02 0.86 -18.08 16 14 H 0.14 6.29 7.83 -2.91 -0.02 6.27 16 15 C 0.00 -0.19 5.50 84.95 0.47 0.27 16 16 N -0.82 -46.57 11.81 21.66 0.26 -46.31 16 17 Si 1.02 38.41 29.55 68.60 2.03 40.44 16 18 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 19 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 21 C -0.09 -4.08 11.50 83.37 0.96 -3.12 16 22 C -0.09 -2.62 7.32 22.67 0.17 -2.45 16 23 F -0.13 -3.36 16.08 44.97 0.72 -2.63 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 1.50 7.71 -2.39 -0.02 1.48 16 29 H 0.23 4.78 8.06 -2.91 -0.02 4.76 16 30 H 0.43 12.97 8.40 -92.71 -0.78 12.20 16 31 H 0.20 9.35 5.61 -2.91 -0.02 9.33 16 32 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.18 6.83 8.06 -2.91 -0.02 6.81 16 Total: -1.00 -69.15 296.25 5.81 -63.34 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.39 Total: 32.54 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 8.01 Total: 2.64 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -5.34 Total: -136.32 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.72 Total: -2.63 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -69.15 5.81 -63.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767218119.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.810 kcal (2) G-P(sol) polarization free energy of solvation -69.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds