Wall clock time and date at job start Thu Apr 9 2020 13:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99527 * 2 1 4 4 H 1.48498 * 109.47122 * 270.00205 * 3 2 1 5 5 H 1.48503 * 109.47152 * 29.99814 * 3 2 1 6 6 H 1.48497 * 109.47042 * 150.00177 * 3 2 1 7 7 C 1.37874 * 120.00776 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99350 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00094 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00115 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 O 1.42898 * 109.47319 * 180.02562 * 14 13 11 16 16 C 1.35912 * 117.00151 * 180.02562 * 15 14 13 17 17 C 1.38896 * 119.96904 * 359.71802 * 16 15 14 18 18 C 1.38290 * 120.28957 * 179.76866 * 17 16 15 19 19 C 1.37933 * 120.23791 * 0.51098 * 18 17 16 20 20 C 1.39831 * 119.93687 * 359.74749 * 19 18 17 21 21 C 1.47186 * 120.14631 * 180.02562 * 20 19 18 22 22 O 1.21252 * 119.99690 * 179.97438 * 21 20 19 23 23 C 1.38379 * 119.97072 * 180.02562 * 16 15 14 24 24 H 0.96996 * 120.00667 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47002 * 60.00609 * 9 7 2 26 26 H 1.08992 * 109.47459 * 299.99647 * 9 7 2 27 27 H 0.97003 * 120.00244 * 0.02562 * 10 9 7 28 28 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 29 29 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 30 30 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 31 31 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 32 32 H 1.07998 * 119.85124 * 0.02562 * 17 16 15 33 33 H 1.08003 * 119.87745 * 180.25834 * 18 17 16 34 34 H 1.07996 * 120.02781 * 179.76315 * 19 18 17 35 35 H 1.08000 * 119.99738 * 359.97438 * 21 20 19 36 36 H 1.08006 * 120.11752 * 359.94747 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1937 0.0000 10 7 4.0001 -2.5750 0.0013 11 6 5.3252 -2.8212 0.0016 12 8 6.1132 -1.8992 0.0012 13 6 5.8277 -4.2419 0.0024 14 6 7.3576 -4.2418 0.0032 15 8 7.8341 -5.5890 0.0034 16 6 9.1815 -5.7670 0.0046 17 6 10.0269 -4.6650 -0.0002 18 6 11.3989 -4.8384 0.0058 19 6 11.9386 -6.1078 0.0061 20 6 11.0965 -7.2241 0.0056 21 6 11.6675 -8.5807 0.0065 22 8 10.9348 -9.5468 0.0066 23 6 9.7098 -7.0460 0.0043 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6794 0.8895 26 1 3.8746 -0.6806 -0.8905 27 1 3.3698 -3.3123 0.0020 28 1 5.4644 -4.7563 -0.8873 29 1 5.4642 -4.7553 0.8926 30 1 7.7205 -3.7276 0.8932 31 1 7.7214 -3.7283 -0.8868 32 1 9.6109 -3.6684 -0.0046 33 1 12.0501 -3.9768 0.0062 34 1 13.0105 -6.2393 0.0070 35 1 12.7391 -8.7155 0.0072 36 1 9.0533 -7.9036 0.0040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787623868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:42 Heat of formation + Delta-G solvation = -90.410215 kcal Electronic energy + Delta-G solvation = -19639.845088 eV Core-core repulsion = 16282.473171 eV Total energy + Delta-G solvation = -3357.371917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60066 -39.45167 -38.93929 -37.36188 -34.45494 -32.55728 -32.16323 -31.58643 -30.12106 -28.02627 -25.60987 -24.17320 -22.71774 -21.94881 -20.90352 -19.93867 -18.61304 -17.24323 -16.77179 -16.49256 -16.48278 -15.89180 -15.61030 -15.34606 -15.01719 -14.91149 -14.52466 -14.10899 -14.01610 -13.50629 -13.26321 -12.95639 -12.44204 -12.39601 -12.32810 -11.99803 -11.83623 -11.19946 -11.06376 -10.91184 -10.82084 -10.22286 -10.03181 -9.56825 -9.42209 -9.40183 -8.84111 -8.56425 -8.27796 -6.26405 -4.29448 0.25615 1.06827 2.08926 2.75192 3.04849 3.22499 3.29478 3.36617 3.45186 3.82431 4.08376 4.28386 4.41270 4.60366 4.66901 4.75323 4.85147 4.87914 5.05167 5.08571 5.19247 5.26936 5.45465 5.58728 5.66899 5.67157 5.85998 5.95943 6.01877 6.30842 6.71147 6.98549 7.01166 7.09057 7.12772 7.30812 8.03107 8.41116 8.66303 8.79129 9.32828 10.85434 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.047356 B = 0.002536 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.127391 B =11039.692567 C =11605.071408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.701 5.701 11 C 0.506 3.494 12 O -0.562 6.562 13 C -0.141 4.141 14 C 0.075 3.925 15 O -0.315 6.315 16 C 0.124 3.876 17 C -0.175 4.175 18 C -0.094 4.094 19 C -0.111 4.111 20 C -0.159 4.159 21 C 0.384 3.616 22 O -0.457 6.457 23 C -0.096 4.096 24 H 0.268 0.732 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.399 0.601 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.530 -12.686 0.037 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.349 5.349 11 C 0.291 3.709 12 O -0.443 6.443 13 C -0.181 4.181 14 C 0.000 4.000 15 O -0.229 6.229 16 C 0.079 3.921 17 C -0.194 4.194 18 C -0.112 4.112 19 C -0.129 4.129 20 C -0.160 4.160 21 C 0.242 3.758 22 O -0.330 6.330 23 C -0.115 4.115 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.233 0.767 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.125 0.875 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 23.313 -12.545 0.038 26.474 hybrid contribution 0.008 1.013 -0.024 1.014 sum 23.321 -11.532 0.015 26.016 Atomic orbital electron populations 1.69875 1.06212 1.27505 1.49190 1.24804 0.94810 0.99205 0.93827 0.86808 0.80532 0.83222 0.79056 1.19826 1.20841 1.18544 1.21081 0.88434 0.95304 1.53567 0.90171 1.19530 0.95370 0.78433 0.96891 1.46172 1.05523 1.11349 1.71832 1.20141 0.83451 0.89971 0.77380 1.90667 1.55538 1.46445 1.51607 1.21487 0.94321 0.96397 1.05927 1.22517 0.94100 0.80278 1.03080 1.86020 1.18365 1.30189 1.88320 1.18897 0.82914 0.93746 0.96581 1.21703 0.94554 0.98972 1.04122 1.20956 0.94379 0.97466 0.98356 1.21259 0.99693 0.91693 1.00290 1.20721 0.93482 0.96410 1.05398 1.24095 0.95069 0.86418 0.70194 1.90543 1.65236 1.42902 1.34273 1.20680 0.94470 0.95477 1.00843 0.92187 0.95577 0.96028 0.76687 0.87916 0.87921 0.90883 0.90894 0.84436 0.85003 0.84926 0.87477 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.55 -14.70 9.83 -34.44 -0.34 -15.04 16 8 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 9 C 0.22 5.25 4.50 -5.19 -0.02 5.23 16 10 N -0.70 -13.51 5.55 -61.47 -0.34 -13.85 16 11 C 0.51 8.92 7.83 -10.99 -0.09 8.84 16 12 O -0.56 -11.84 15.98 5.55 0.09 -11.75 16 13 C -0.14 -1.78 6.07 -27.89 -0.17 -1.95 16 14 C 0.08 0.93 4.03 37.16 0.15 1.08 16 15 O -0.32 -3.90 10.13 -19.46 -0.20 -4.09 16 16 C 0.12 1.41 6.68 -39.29 -0.26 1.15 16 17 C -0.17 -1.72 9.04 -39.32 -0.36 -2.08 16 18 C -0.09 -0.72 10.02 -39.67 -0.40 -1.11 16 19 C -0.11 -0.74 9.79 -39.10 -0.38 -1.12 16 20 C -0.16 -1.34 5.87 -105.08 -0.62 -1.96 16 21 C 0.38 2.81 11.46 34.36 0.39 3.21 16 22 O -0.46 -5.26 17.16 5.58 0.10 -5.16 16 23 C -0.10 -1.03 9.54 -38.94 -0.37 -1.40 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 26 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 27 H 0.40 6.72 8.32 -40.82 -0.34 6.38 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.90 7.62 -51.93 -0.40 0.51 16 31 H 0.07 0.90 7.60 -51.93 -0.39 0.51 16 32 H 0.14 1.31 6.28 -52.49 -0.33 0.98 16 33 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 34 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.11 0.31 8.06 -52.49 -0.42 -0.12 16 36 H 0.14 1.56 7.65 -52.48 -0.40 1.16 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -33.54 319.97 -6.31 -39.85 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.32 Total: 2.26 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.56 Total: -3.09 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.43 Total: -39.22 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.01 Total: -21.01 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.54 -6.31 -39.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787623868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.561 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds