Wall clock time and date at job start Thu Apr 9 2020 13:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99897 * 2 1 4 4 H 1.48503 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46772 * 300.00055 * 3 2 1 6 6 H 1.48503 * 109.46979 * 60.00059 * 3 2 1 7 7 C 1.37881 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99321 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00419 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47038 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00053 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00151 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47222 * 179.97438 * 13 11 10 15 15 O 1.42905 * 109.47244 * 179.97438 * 14 13 11 16 16 C 1.35663 * 117.00012 * 179.97438 * 15 14 13 17 17 C 1.39081 * 119.88517 * 0.25531 * 16 15 14 18 18 C 1.37112 * 120.11570 * 180.25506 * 17 16 15 19 19 C 1.40043 * 119.88015 * 359.46625 * 18 17 16 20 20 C 1.46865 * 120.11149 * 180.29875 * 19 18 17 21 21 O 1.21289 * 120.00170 * 0.02562 * 20 19 18 22 22 C 1.40036 * 119.77267 * 0.28070 * 19 18 17 23 23 C 1.37118 * 119.88298 * 359.97438 * 22 19 18 24 24 H 0.96996 * 120.00209 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47248 * 59.99792 * 9 7 2 26 26 H 1.09000 * 109.46724 * 299.99424 * 9 7 2 27 27 H 0.97002 * 120.00098 * 359.97438 * 10 9 7 28 28 H 1.09004 * 109.47280 * 59.99169 * 13 11 10 29 29 H 1.08998 * 109.47342 * 299.99829 * 13 11 10 30 30 H 1.08998 * 109.47061 * 60.00033 * 14 13 11 31 31 H 1.09000 * 109.46825 * 299.99717 * 14 13 11 32 32 H 1.07998 * 119.94116 * 0.02562 * 17 16 15 33 33 H 1.08002 * 120.06260 * 179.74913 * 18 17 16 34 34 H 1.08003 * 119.99729 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.05599 * 180.02562 * 22 19 18 36 36 H 1.08002 * 119.93856 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7331 -6.0288 -0.0006 14 6 1.9681 -7.3538 -0.0004 15 8 2.8967 -8.4400 -0.0016 16 6 2.3782 -9.6937 -0.0011 17 6 0.9990 -9.8731 -0.0049 18 6 0.4698 -11.1380 0.0008 19 6 1.3207 -12.2503 -0.0007 20 6 0.7594 -13.6074 -0.0012 21 8 -0.4430 -13.7663 -0.0007 22 6 2.7087 -12.0640 -0.0022 23 6 3.2276 -10.7948 -0.0027 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5572 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 3.1567 -3.4355 0.0002 28 1 3.3599 -5.9714 0.8893 29 1 3.3596 -5.9707 -0.8906 30 1 1.3411 -7.4114 -0.8902 31 1 1.3419 -7.4117 0.8898 32 1 0.3437 -9.0147 -0.0087 33 1 -0.6013 -11.2763 0.0020 34 1 1.4173 -14.4639 -0.0020 35 1 3.3691 -12.9185 -0.0039 36 1 4.2979 -10.6501 -0.0043 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787627523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:46 Heat of formation + Delta-G solvation = -95.756079 kcal Electronic energy + Delta-G solvation = -19541.370624 eV Core-core repulsion = 16183.766892 eV Total energy + Delta-G solvation = -3357.603731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61691 -39.38226 -38.84109 -37.29969 -34.33916 -32.53877 -32.11872 -31.49002 -30.33284 -27.45999 -25.07208 -24.45332 -22.86488 -21.86323 -21.12997 -19.77157 -18.66903 -17.23497 -16.93621 -16.49383 -16.33289 -15.72081 -15.32900 -15.07581 -14.80770 -14.77773 -14.43664 -14.21167 -13.84800 -13.55199 -13.15158 -12.93273 -12.74701 -12.22481 -12.04286 -11.89721 -11.64110 -11.05954 -10.99701 -10.96378 -10.86463 -10.37941 -10.08793 -9.45445 -9.45074 -9.26725 -8.81542 -8.54175 -8.01032 -6.22780 -4.30140 0.40557 1.04688 2.17792 2.75685 3.18142 3.19856 3.27048 3.29945 3.50356 3.97356 4.09578 4.33255 4.41679 4.50180 4.72932 4.88395 4.90683 4.98757 5.12076 5.13646 5.22391 5.27567 5.56292 5.66034 5.67789 5.69781 5.86292 5.98535 6.07573 6.35195 7.07501 7.15195 7.20578 7.29585 7.42601 7.58112 7.89450 8.48918 8.68106 8.95015 9.36585 10.87426 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.054431 B = 0.002347 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.286354 B =11926.855218 C =12415.391963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.708 5.708 11 C 0.503 3.497 12 O -0.559 6.559 13 C -0.141 4.141 14 C 0.073 3.927 15 O -0.312 6.312 16 C 0.175 3.825 17 C -0.225 4.225 18 C -0.015 4.015 19 C -0.244 4.244 20 C 0.386 3.614 21 O -0.470 6.470 22 C -0.029 4.029 23 C -0.172 4.172 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.393 0.607 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.997 -22.640 -0.007 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.356 5.356 11 C 0.287 3.713 12 O -0.439 6.439 13 C -0.181 4.181 14 C -0.002 4.002 15 O -0.224 6.224 16 C 0.128 3.872 17 C -0.243 4.243 18 C -0.033 4.033 19 C -0.245 4.245 20 C 0.246 3.754 21 O -0.344 6.344 22 C -0.047 4.047 23 C -0.190 4.190 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.226 0.774 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.118 0.882 35 H 0.156 0.844 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.525 -22.626 -0.007 23.845 hybrid contribution 0.819 1.276 0.001 1.517 sum 8.344 -21.350 -0.007 22.922 Atomic orbital electron populations 1.69980 1.06128 1.27309 1.48797 1.24968 0.94940 0.99548 0.94622 0.86339 0.79809 0.82840 0.77797 1.19605 1.20757 1.20760 1.21253 0.93338 0.90370 1.53348 0.91758 1.19157 0.88288 0.81900 0.97882 1.46452 1.11396 1.05961 1.71753 1.20079 0.89024 0.84379 0.77814 1.90684 1.16852 1.84969 1.51382 1.21514 0.99267 0.91720 1.05641 1.22607 0.90858 0.83266 1.03477 1.85955 1.37161 1.12353 1.86932 1.19423 0.91938 0.84842 0.91018 1.21328 0.94236 0.99189 1.09565 1.21127 1.00420 0.90959 0.90787 1.20815 0.94442 0.96336 1.12928 1.23888 0.90168 0.91321 0.70042 1.90535 1.19115 1.89105 1.35639 1.21031 0.93790 0.96707 0.93176 1.20297 1.00173 0.90153 1.08406 0.92425 0.95396 0.95382 0.77422 0.88125 0.88122 0.90599 0.90590 0.84232 0.84720 0.88196 0.84435 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -14.44 9.28 -34.44 -0.32 -14.76 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 10 N -0.71 -14.09 5.55 -61.48 -0.34 -14.43 16 11 C 0.50 9.26 7.83 -10.99 -0.09 9.17 16 12 O -0.56 -12.54 15.98 5.56 0.09 -12.45 16 13 C -0.14 -1.79 6.07 -27.89 -0.17 -1.96 16 14 C 0.07 0.91 4.02 37.16 0.15 1.06 16 15 O -0.31 -3.65 10.12 -18.69 -0.19 -3.84 16 16 C 0.18 1.90 6.70 -38.96 -0.26 1.64 16 17 C -0.22 -2.45 8.99 -39.68 -0.36 -2.81 16 18 C -0.01 -0.15 9.57 -39.31 -0.38 -0.53 16 19 C -0.24 -2.13 5.87 -105.06 -0.62 -2.75 16 20 C 0.39 3.06 11.44 34.22 0.39 3.45 16 21 O -0.47 -5.69 17.16 5.55 0.10 -5.60 16 22 C -0.03 -0.20 9.77 -39.31 -0.38 -0.58 16 23 C -0.17 -1.48 9.95 -39.68 -0.39 -1.87 16 24 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.39 6.59 8.32 -40.82 -0.34 6.25 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 0.98 7.60 -51.93 -0.39 0.58 16 31 H 0.08 0.98 7.62 -51.93 -0.40 0.58 16 32 H 0.14 1.52 6.27 -52.49 -0.33 1.19 16 33 H 0.13 1.38 7.64 -52.49 -0.40 0.98 16 34 H 0.10 0.36 8.06 -52.48 -0.42 -0.06 16 35 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -33.41 323.41 -6.66 -40.06 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.35 Total: 2.82 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.55 Total: -1.95 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.40 Total: -39.38 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.01 Total: -21.89 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.41 -6.66 -40.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.692 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds