Wall clock time and date at job start Thu Apr 9 2020 13:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00326 * 2 1 4 4 H 1.48499 * 109.46944 * 240.00012 * 3 2 1 5 5 H 1.48507 * 109.46870 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47072 * 119.99326 * 3 2 1 7 7 C 1.37879 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47252 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47146 * 180.02562 * 10 9 7 12 12 S 1.65598 * 120.00362 * 164.99980 * 11 10 9 13 13 O 1.42103 * 104.27457 * 308.92929 * 12 11 10 14 14 O 1.42095 * 104.28092 * 181.06980 * 12 11 10 15 15 C 1.81401 * 104.44657 * 64.99756 * 12 11 10 16 16 C 1.53003 * 109.47098 * 180.02562 * 15 12 11 17 17 H 1.08999 * 109.57284 * 305.15965 * 16 15 12 18 18 C 1.53178 * 109.52445 * 184.99868 * 16 15 12 19 19 C 1.53178 * 109.03511 * 183.11206 * 18 16 15 20 20 C 1.53093 * 109.16255 * 56.98447 * 19 18 16 21 21 O 1.42904 * 109.42351 * 302.38111 * 20 19 18 22 22 C 1.42930 * 114.08305 * 61.15476 * 21 20 19 23 23 H 0.97000 * 120.00127 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46934 * 59.99950 * 9 7 2 25 25 H 1.09001 * 109.47181 * 300.00159 * 9 7 2 26 26 H 1.08999 * 109.47207 * 60.00099 * 10 9 7 27 27 H 1.09001 * 109.47141 * 300.00164 * 10 9 7 28 28 H 0.97001 * 119.99901 * 344.99643 * 11 10 9 29 29 H 1.08994 * 109.47326 * 60.00406 * 15 12 11 30 30 H 1.08999 * 109.47281 * 299.99776 * 15 12 11 31 31 H 1.09002 * 109.54068 * 63.24617 * 18 16 15 32 32 H 1.08992 * 109.61712 * 303.02756 * 18 16 15 33 33 H 1.09000 * 109.52619 * 297.07706 * 19 18 16 34 34 H 1.08998 * 109.51869 * 176.88944 * 19 18 16 35 35 H 1.09002 * 109.48198 * 62.37219 * 20 19 18 36 36 H 1.08999 * 109.48029 * 182.39833 * 20 19 18 37 37 H 1.09003 * 109.47243 * 178.86599 * 22 21 20 38 38 H 1.08992 * 109.47948 * 58.83460 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0012 12 16 2.2986 -6.3406 -0.3689 13 8 2.9628 -6.0605 -1.5935 14 8 1.2870 -7.3357 -0.2950 15 6 3.5007 -6.5542 0.9728 16 6 4.2999 -7.8383 0.7419 17 1 3.6155 -8.6795 0.6318 18 6 5.2274 -8.0857 1.9356 19 6 6.0773 -9.3296 1.6585 20 6 6.8515 -9.1287 0.3531 21 8 5.9318 -8.8727 -0.7103 22 6 5.1427 -7.6950 -0.5281 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8923 27 1 2.8726 -3.6048 -0.8877 28 1 0.5672 -4.9451 0.2176 29 1 2.9746 -6.6196 1.9251 30 1 4.1803 -5.7022 0.9908 31 1 4.6309 -8.2444 2.8340 32 1 5.8786 -7.2234 2.0779 33 1 5.4289 -10.2009 1.5670 34 1 6.7791 -9.4812 2.4786 35 1 7.5294 -8.2817 0.4592 36 1 7.4254 -10.0278 0.1288 37 1 4.4855 -7.5615 -1.3875 38 1 5.7982 -6.8294 -0.4336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792769184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:52 Heat of formation + Delta-G solvation = -143.157587 kcal Electronic energy + Delta-G solvation = -20021.978613 eV Core-core repulsion = 16797.763349 eV Total energy + Delta-G solvation = -3224.215264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.69820 -36.95373 -35.81967 -35.42301 -34.93726 -32.77760 -32.47328 -29.17576 -27.55740 -25.35094 -24.51263 -22.87796 -21.19805 -20.51697 -19.13713 -17.54731 -16.66932 -16.39865 -16.38324 -16.22652 -15.68882 -15.13209 -14.75641 -14.58710 -14.15551 -13.94874 -13.68027 -13.19365 -12.98554 -12.63177 -12.47552 -11.95553 -11.88533 -11.81819 -11.64649 -11.48170 -11.39588 -11.31209 -11.12484 -10.72879 -10.65919 -10.52868 -10.29850 -9.75342 -9.61680 -9.32209 -8.92749 -8.43936 -6.10911 -4.14945 0.39895 2.96821 3.28168 3.33201 3.35282 3.55597 3.86394 4.14996 4.27380 4.38021 4.42924 4.52107 4.60193 4.75626 4.93547 5.05242 5.15817 5.25750 5.30596 5.34114 5.47939 5.55808 5.58503 5.63936 5.70234 5.79066 5.94024 6.11248 6.41278 6.67943 6.91240 7.37745 7.52098 7.61832 7.87162 8.24334 8.90747 9.49871 11.00450 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.003852 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.520960 B = 7267.080539 C = 7768.367199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.018 3.982 10 C 0.115 3.885 11 N -1.114 6.114 12 S 2.607 3.393 13 O -0.954 6.954 14 O -0.967 6.967 15 C -0.630 4.630 16 C -0.112 4.112 17 H 0.093 0.907 18 C -0.110 4.110 19 C -0.158 4.158 20 C 0.054 3.946 21 O -0.374 6.374 22 C 0.039 3.961 23 H 0.263 0.737 24 H 0.026 0.974 25 H 0.024 0.976 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.416 0.584 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.990 -16.584 5.014 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.021 4.021 10 C -0.010 4.010 11 N -0.875 5.875 12 S 2.699 3.301 13 O -0.944 6.944 14 O -0.958 6.958 15 C -0.759 4.759 16 C -0.132 4.132 17 H 0.111 0.889 18 C -0.149 4.149 19 C -0.196 4.196 20 C -0.023 4.023 21 O -0.293 6.293 22 C -0.038 4.038 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.251 0.749 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.130 0.870 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.855 -17.113 4.054 20.667 hybrid contribution 0.295 1.474 1.166 1.903 sum 11.150 -15.638 5.220 19.903 Atomic orbital electron populations 1.69944 1.06112 1.27040 1.49981 1.25006 0.94885 0.99401 0.94971 0.86586 0.79535 0.82760 0.78704 1.20067 1.21233 1.20181 1.21047 0.93130 0.90543 1.51856 0.92315 1.19275 0.94060 0.90518 0.98260 1.21674 0.96212 0.82949 1.00159 1.55536 1.21527 1.22145 1.88273 1.04986 0.75390 0.73324 0.76423 1.93588 1.77127 1.83918 1.39789 1.93576 1.55333 1.59268 1.87587 1.30690 1.17294 1.06071 1.21813 1.21554 0.98109 0.95637 0.97923 0.88885 1.21605 0.97814 0.98278 0.97168 1.22239 0.99978 0.98899 0.98512 1.22649 0.91300 1.01375 0.86939 1.87992 1.53068 1.44538 1.43679 1.23168 0.94723 0.88361 0.97565 0.92720 0.95520 0.95809 0.93104 0.91223 0.74941 0.84444 0.84566 0.90856 0.91116 0.90764 0.90526 0.92950 0.88717 0.87032 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.43 5.11 -27.88 -0.14 0.28 16 10 C 0.11 2.16 6.07 -4.04 -0.02 2.14 16 11 N -1.11 -17.90 5.88 -10.61 -0.06 -17.97 16 12 S 2.61 38.05 5.12 -107.50 -0.55 37.50 16 13 O -0.95 -16.62 15.31 -57.54 -0.88 -17.50 16 14 O -0.97 -16.40 18.08 -57.54 -1.04 -17.44 16 15 C -0.63 -6.62 5.52 37.16 0.21 -6.42 16 16 C -0.11 -1.17 2.39 -90.48 -0.22 -1.39 16 17 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.11 -0.93 5.31 -26.55 -0.14 -1.07 16 19 C -0.16 -1.20 6.14 -26.59 -0.16 -1.36 16 20 C 0.05 0.46 6.84 37.21 0.25 0.72 16 21 O -0.37 -4.50 10.77 -35.23 -0.38 -4.88 16 22 C 0.04 0.46 5.74 37.21 0.21 0.67 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.33 7.69 -51.93 -0.40 0.93 16 28 H 0.42 6.41 8.62 -34.47 -0.30 6.11 16 29 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.14 1.27 8.14 -51.92 -0.42 0.84 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 1.47 5.79 -51.93 -0.30 1.17 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -33.17 320.99 -8.82 -41.98 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.03 Total: 2.08 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -0.42 Total: -19.32 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.67 Total: -43.13 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -2.30 Total: -39.81 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 38.05 SS G_CDS: -0.55 Total: 37.50 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.17 -8.82 -41.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792769184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.173 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds