Wall clock time and date at job start Thu Apr 9 2020 13:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00326 * 2 1 4 4 H 1.48499 * 109.46944 * 240.00012 * 3 2 1 5 5 H 1.48507 * 109.46870 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47072 * 119.99326 * 3 2 1 7 7 C 1.37879 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47252 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47146 * 180.02562 * 10 9 7 12 12 S 1.65598 * 120.00362 * 164.99980 * 11 10 9 13 13 O 1.42103 * 104.27457 * 308.92929 * 12 11 10 14 14 O 1.42095 * 104.28092 * 181.06980 * 12 11 10 15 15 C 1.81401 * 104.44657 * 64.99756 * 12 11 10 16 16 C 1.53003 * 109.47098 * 180.02562 * 15 12 11 17 17 H 1.08999 * 109.57284 * 305.15965 * 16 15 12 18 18 C 1.53178 * 109.52445 * 184.99868 * 16 15 12 19 19 C 1.53178 * 109.03511 * 183.11206 * 18 16 15 20 20 C 1.53093 * 109.16255 * 56.98447 * 19 18 16 21 21 O 1.42904 * 109.42351 * 302.38111 * 20 19 18 22 22 C 1.42930 * 114.08305 * 61.15476 * 21 20 19 23 23 H 0.97000 * 120.00127 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46934 * 59.99950 * 9 7 2 25 25 H 1.09001 * 109.47181 * 300.00159 * 9 7 2 26 26 H 1.08999 * 109.47207 * 60.00099 * 10 9 7 27 27 H 1.09001 * 109.47141 * 300.00164 * 10 9 7 28 28 H 0.97001 * 119.99901 * 344.99643 * 11 10 9 29 29 H 1.08994 * 109.47326 * 60.00406 * 15 12 11 30 30 H 1.08999 * 109.47281 * 299.99776 * 15 12 11 31 31 H 1.09002 * 109.54068 * 63.24617 * 18 16 15 32 32 H 1.08992 * 109.61712 * 303.02756 * 18 16 15 33 33 H 1.09000 * 109.52619 * 297.07706 * 19 18 16 34 34 H 1.08998 * 109.51869 * 176.88944 * 19 18 16 35 35 H 1.09002 * 109.48198 * 62.37219 * 20 19 18 36 36 H 1.08999 * 109.48029 * 182.39833 * 20 19 18 37 37 H 1.09003 * 109.47243 * 178.86599 * 22 21 20 38 38 H 1.08992 * 109.47948 * 58.83460 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0012 12 16 2.2986 -6.3406 -0.3689 13 8 2.9628 -6.0605 -1.5935 14 8 1.2870 -7.3357 -0.2950 15 6 3.5007 -6.5542 0.9728 16 6 4.2999 -7.8383 0.7419 17 1 3.6155 -8.6795 0.6318 18 6 5.2274 -8.0857 1.9356 19 6 6.0773 -9.3296 1.6585 20 6 6.8515 -9.1287 0.3531 21 8 5.9318 -8.8727 -0.7103 22 6 5.1427 -7.6950 -0.5281 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8923 27 1 2.8726 -3.6048 -0.8877 28 1 0.5672 -4.9451 0.2176 29 1 2.9746 -6.6196 1.9251 30 1 4.1803 -5.7022 0.9908 31 1 4.6309 -8.2444 2.8340 32 1 5.8786 -7.2234 2.0779 33 1 5.4289 -10.2009 1.5670 34 1 6.7791 -9.4812 2.4786 35 1 7.5294 -8.2817 0.4592 36 1 7.4254 -10.0278 0.1288 37 1 4.4855 -7.5615 -1.3875 38 1 5.7982 -6.8294 -0.4336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792769184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:51:52 Heat of formation + Delta-G solvation = -168.452269 kcal Electronic energy + Delta-G solvation = -20023.075473 eV Core-core repulsion = 16797.763349 eV Total energy + Delta-G solvation = -3225.312123 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45830 -38.22715 -37.11479 -36.93657 -35.75005 -34.71495 -33.15236 -30.98647 -28.39208 -26.40978 -26.06344 -23.62759 -22.94106 -21.24641 -20.35879 -18.87953 -18.21830 -17.54729 -17.47859 -17.16327 -16.84825 -16.45292 -15.94521 -15.53635 -15.50380 -15.38954 -14.59346 -14.39246 -14.00986 -13.70244 -13.41970 -13.36328 -13.25126 -13.12641 -13.05590 -12.89742 -12.48023 -12.43314 -12.33541 -12.22409 -12.07533 -11.50878 -11.42420 -11.32053 -11.19445 -10.58752 -10.49980 -10.22503 -8.19707 -6.30806 -0.74488 1.44509 1.47338 1.54694 1.75750 2.43770 2.72235 2.83659 3.15389 3.19435 3.45597 3.57753 3.68354 3.99604 4.10767 4.14004 4.21740 4.29726 4.48099 4.54485 4.59459 4.64818 4.74867 4.85751 4.88790 4.92967 5.01637 5.05501 5.13715 5.33071 5.51169 5.64749 5.82279 6.03747 6.16771 6.23685 6.85798 7.38890 8.92290 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.003852 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.520960 B = 7267.080539 C = 7768.367199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.017 3.983 10 C 0.128 3.872 11 N -1.119 6.119 12 S 2.606 3.394 13 O -0.990 6.990 14 O -0.996 6.996 15 C -0.601 4.601 16 C -0.116 4.116 17 H 0.088 0.912 18 C -0.110 4.110 19 C -0.156 4.156 20 C 0.044 3.956 21 O -0.399 6.399 22 C 0.031 3.969 23 H 0.264 0.736 24 H -0.007 1.007 25 H 0.009 0.991 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.417 0.583 29 H 0.168 0.832 30 H 0.159 0.841 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.383 -16.750 6.972 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.090 0.910 9 C -0.022 4.022 10 C 0.002 3.998 11 N -0.878 5.878 12 S 2.704 3.296 13 O -0.980 6.980 14 O -0.986 6.986 15 C -0.734 4.734 16 C -0.137 4.137 17 H 0.107 0.893 18 C -0.148 4.148 19 C -0.194 4.194 20 C -0.032 4.032 21 O -0.318 6.318 22 C -0.045 4.045 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.027 0.973 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.251 0.749 29 H 0.186 0.814 30 H 0.177 0.823 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.223 -17.281 5.975 22.564 hybrid contribution -0.405 1.415 0.560 1.575 sum 12.818 -15.865 6.535 21.418 Atomic orbital electron populations 1.70086 1.07887 1.27922 1.51392 1.25965 0.95717 1.03431 0.94658 0.85485 0.78203 0.77951 0.79316 1.19370 1.21341 1.18626 1.21576 0.94042 0.91671 1.50955 0.91022 1.19169 0.94626 0.92430 0.95927 1.21378 0.94948 0.81995 1.01476 1.55437 1.21895 1.21806 1.88670 1.04867 0.75524 0.72225 0.77029 1.93543 1.77380 1.84041 1.43084 1.93536 1.57297 1.59517 1.88294 1.30442 1.15772 1.07289 1.19876 1.21639 0.98337 0.95196 0.98522 0.89321 1.21665 0.97735 0.99118 0.96298 1.22243 1.00173 0.98373 0.98599 1.22930 0.91124 1.02464 0.86725 1.87956 1.53804 1.44549 1.45497 1.23171 0.94986 0.88921 0.97470 0.92778 0.98833 0.97275 0.89896 0.91727 0.74907 0.81397 0.82302 0.89318 0.89973 0.91213 0.88144 0.91976 0.87341 0.89335 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 42.43 29.54 68.60 2.03 44.45 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.54 -29.04 9.11 25.60 0.23 -28.81 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 9 C 0.02 0.84 5.11 29.85 0.15 1.00 16 10 C 0.13 4.69 6.07 86.38 0.52 5.22 16 11 N -1.12 -35.65 5.88 -187.49 -1.10 -36.75 16 12 S 2.61 74.85 5.12 -56.49 -0.29 74.56 16 13 O -0.99 -35.01 15.31 -127.65 -1.95 -36.96 16 14 O -1.00 -33.93 18.08 -127.65 -2.31 -36.24 16 15 C -0.60 -10.77 5.52 71.98 0.40 -10.37 16 16 C -0.12 -2.16 2.39 -10.70 -0.03 -2.18 16 17 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 18 C -0.11 -1.42 5.31 30.71 0.16 -1.25 16 19 C -0.16 -1.85 6.14 30.68 0.19 -1.66 16 20 C 0.04 0.64 6.84 72.01 0.49 1.14 16 21 O -0.40 -9.19 10.77 -148.98 -1.60 -10.79 16 22 C 0.03 0.71 5.74 72.01 0.41 1.12 16 23 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.06 2.43 7.69 -2.39 -0.02 2.42 16 28 H 0.42 13.06 8.62 -96.75 -0.83 12.23 16 29 H 0.17 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.16 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 2.37 5.79 -2.39 -0.01 2.36 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -72.91 320.99 -1.74 -74.65 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.21 Total: 17.25 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 3.00 Total: -35.31 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -0.82 Total: -91.61 kcal Atomic # 8 Polarization: -78.13 SS G_CDS: -5.87 Total: -83.99 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 74.85 SS G_CDS: -0.29 Total: 74.56 kcal Total: -72.91 -1.74 -74.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792769184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.804 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds